AMCG00009346


Basic Information

Item Value
gene id AMCG00009346
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 34355739 ~ 34362436 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009346
CCCAGGGGAGAAAACAATCTCACGACCTATTCCATGCAAAAGAAATCCCTCTTACGGAAAAGTTCCCACTTGCTTACATGgagttattattagtagtgtCGGTGGTGCAATGAGCACTTAAAGGTGTAATAGTGATGATTGTGTCAGTTACCGATATACGAAACTGGATATGTTTAACGTAGCCTCCGAGCCCATGACTAGACAAAGAATCCGTACCTACTCCATCCTCGTCCGGCGTCCAGGGAATACACCTACGATAATAACCTCTGCTGCCGCATCTCACAGatatCTTGAAGCCAGAATCGGATTGATGTCCAGTAAGTCGACATGGAAATGGCAGGATCAGTCACGCACAAAAATGGAAGACAACGCAAGCATCTTGTTTCTTGGGATATGAAAATCAACGATGGGAAATATGGGACCGATTTAGAAATAGAAGGGGAGGCATTACTCCACGACCCCAACAAAGAAGACGGCCACCCCAAGAGCCGCAAAGGACTGAAATCGGAGCTGGGAAATGTCTCTCTTCTGCTTTTCCTCTATGTTTTACAAGGAATACCCCTAGGCTTGGCTGGGAGTATACCTCTGATTCTGCAGAGCAAAAATGTCAGTTACACAGATCAAGCATATTTCAGCTTTGTCTTTTGGCCCTTCAGTCTCAAGCTGCTCTGGGCGCCTTTGGTTGACGCCATGTACATTAAAACGTTTGGACGCAGGAAGTCCTGGCTTGTGCCAACACAGTATCTTCTGGGATTCTTCATGTTGTATTTGTCCACTTCTGTAGATTCGCTGCTGGAGAGCGATGGCACGAAAGGCCCAGATATTTTCACCCTCACGGCGGTGTTCTTCATGTTTGAGTTCTTGGCGGCCACTCAGGACATAGCAGTGGATGGATGGGCTTTGACTATGTTGTCCAGGGAAAATGTGGGCTACGCGTCCACCTGCAACTCGGTTGGTCAGACTGCAGGATACTTTCTGGGCAATGTGCTTTTCCTGGCTCTGGAGTCTGCTGATTTCTGTAATAAATACCTAAGGTTCGAACCAAAGACTAAAGGAATTGTTACTCTCTCAGattttttgtttttttggggcaTTGTATTCTTGGCCACTACAACATTGGTTGCTCTTCTGAAGAAAGAAACCAGTAAAAAGTCGAAAGAAGAGAGACAGGGAGTCATGGACACCTATAAACTGCTCTTTTCAATTATCAAGATGCCAACAGTTCTGACATTCTGTGTCCTGCTACTTACTGCTAAAATGGGGTTCTCTGCTGCTGATGCTGTAACTGGGCTGAAGTTAGTAGAAGAAGGTGTACCAAAAGAACAACTGGCCCTGCTGGCAGTGCCTATGGTCCCTCTGCAGATCCTCCTACCTTTGATAATCAGCAAATACACTGCAGGCCCTCGACCACTGGACATTTTTTACAAAGCCTTTCCTTTCAGGTTACTGATTGGACTGGAGTTTGCTTTGCTAGTGTGGTGGACTCCCAGTGTAAAACACGATGGAGGATTCCCAGCTTATTACTATATTGTGGTTCTGATAAGTTATGCTGTGCACCAGGTTTCCTTATATAGTATGTATGTAGCTGTCATGGCATTTCATGCTAAAGTTAGCGATCCCATAATTGGCGGCACATACATGACTCTCTTAAACACGGTTACCAACCTGGGAGGAAACTGGCCATCTACTCTGGCTCTGTGGCTGGTGGATCCACTCACAGTGAAGGAGTGCCAAGGACCTTCAGGGCAGAGCTGTGGATCTGCAGAAGAAGCCGGGCTCTGTGCAAAGCTGGGAGGGTCATGTGTGACCACACTGGATGGCTATTATGTGGAGTCCGTTATCTGTGTCGTCATTGGCTTCGGGTGGTGGTTCTGGTTTGGGAATAAGATAAAAAAGATACAGGATGAGAAACCATCTGCGTGGCAGTGCAAGACTTCCAAATAACCACCGTTCACCATTCTTTCTTCATTCAGGCTTTAATAGTGGTTAAACCACTGCTGGTACTGAGTGAATACAAGGGACTTAAACTGCTGAAATGAAATCTGTGTATCTCCGATACTCTTCAccacaatgtatatttttttgatttacGGTCTTACAGCCACACCAGTCCGTttctatgttgttgttttttttatcatcacctgttgctgtgaaataaaaatgtcagagTCACATTGGTGACTAGTTAGTCAACCCCCTTTTTTTCTGCTCTTTTTCTCCATTGATATGAAAGTGGAGCGGAGAGGTCAAATTGCTTCCACCTTAGTTTCTTCTATAGAATAAAGGATGGTGCTTAACACTATGGAATTATCCTTTCCTCTCTGGCATGTTTTGCCTAATTaggttatttcttttttaaattacagtatattatGCTTCAGTGAAGATAATTACTTTTCAGCCTGTATTAAATGGTTAATCAATATCgctattttcagaaatgtcgcccactcttatttttttgtgttacatgtgccttgtttttgaaagtttaAACATCCGTTATGAAAACGGATTAACATCTTCAAAACCATTTACCTGTTAAACACATGTATCCCCCCTTCCATGCTATAgttcaataatataaaatgctgtTCAGTCCAACCTATATAtgttatatgtgtatatgttatTGTCTGGTGTTAATACGTAAGattgattttacatttgtgaACTAACAGAAAAAATCGATTTGCAGCAATAAgatgttataaaatataaatgttgaatcttttaaaaatatatatttttaaaagtaacagtATTGCTTAATGTTTATGCACtgataattgaaatgtataggGAACAGCATTCTCCATATGTTGGGCTAGATGGCCCTCGAAGATATttgtttgttctatttttttttatggttaggaattttacatttctgagaATAGCAATATACTATATAcgatttttttaaaaaaaaattaaacatttgtgcAAAAATTAGCCATACTGTTTCAGCCactttgttagtgttttttgtctgtgtcaAAGTGACAATACTTTTTAAAGATGGCCTTGAAAGTGATTCAGTTAAGTATCTTATGATCTATTTAAATGACGAGTGGATTGTATCAACCTCAACAGCTCCATTAGTTTAAAGTTGtaagattgtttattttgtaattatttaccaaattattgatttaatttaattcaatatttaaaaaataaagaattgaatACTCaatcagtttttttattatttaaaacatcaaaacatattttttattttaactgtttatGGAATGTCACCTTTTGGCTATGATTCTGCAGAAAGTCTAATAAACTGGGTACTTTTAAGGAAGATTCAGAGCATTGCTGTTCAGGATCAGATTTCTGCTCTAATGAGCTTTGGCCTTGTGCAATGCTGCTGTTATTGGCATTGTAACTTTGTTGAATTATGAACACGGTGTTTAATTGGTTAGTTTTTAGGTGGTGAAGAGTGTCTATTCTGTAATCAGTACCAGATGAGTTATACATtaattgtacagtatataatttgtatataagCTATGCTGTAAACAGTTCTAAAGAACTTTTCTACCAACAttcatgaaatgtaatattaacaaGATTTAATACATATCCtatatgtaataaaatgcaaagtatatTCCTGTCtccatttttttctgttttatgttcaaattattattggttttgtgTAAGAAGTGTAGGAAGGTTatgcattaaatatttgaaggCCCT

Function

GO:

id name namespace
GO:0021955 central nervous system neuron axonogenesis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008521 acetyl-CoA transmembrane transporter activity molecular_function

KEGG:

id description
K03372 SLC33A1, ACATN; MFS transporter, PAT family, solute carrier family 33 (acetyl-CoA transportor), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009346 True 3723 mRNA 0.39 7 34355739 34362436

Neighbor

gene id symbol gene type direction distance location
AMCG00009343 NA coding upstream 101650 34220572 ~ 34254089 (+)
AMCG00009335 ccnl1 coding upstream 222044 34125029 ~ 34133695 (+)
AMCG00009336 NA coding upstream 234128 34119086 ~ 34121611 (+)
AMCG00009338 LOC107692013,LOC106581445 coding upstream 247725 34092726 ~ 34108014 (+)
AMCG00009337 NA coding upstream 264773 34080494 ~ 34090966 (+)
AMCG00009349 NA coding downstream 36679 34399115 ~ 34430416 (+)
AMCG00009355 NA coding downstream 140212 34502648 ~ 34503259 (+)
AMCG00009357 NA coding downstream 275092 34637528 ~ 34677384 (+)
AMCG00009360 NA coding downstream 327322 34689758 ~ 34690484 (+)
AMCG00009361 NA coding downstream 357575 34720011 ~ 34720679 (+)
G56379 NA non-coding upstream 276900 34045490 ~ 34078839 (+)
G56376 NA non-coding upstream 313480 34038134 ~ 34042259 (+)
G56282 NA non-coding upstream 898567 33456891 ~ 33457172 (+)
G56268 NA non-coding upstream 1073975 33281537 ~ 33281764 (+)
G56262 NA non-coding upstream 1245720 33109739 ~ 33110019 (+)
G56474 NA non-coding downstream 220511 34582947 ~ 34662345 (+)
G56495 NA non-coding downstream 600318 34962754 ~ 34963224 (+)
G56501 NA non-coding downstream 657798 35020234 ~ 35067229 (+)
G56541 LOC103376870 non-coding downstream 1176451 35538887 ~ 35539807 (+)
G56542 NA non-coding downstream 1212610 35575046 ~ 35576926 (+)
G56368 NA other upstream 324294 34000796 ~ 34031445 (+)
G56369 NA other upstream 336924 34015670 ~ 34018815 (+)
G56060 NA other upstream 2190374 32161760 ~ 32165365 (+)
G55591 NA other upstream 4360301 29995126 ~ 29995438 (+)
G55573 NA other upstream 4444175 29907911 ~ 29911564 (+)
AMCG00009345 NA other downstream 983 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 1026478 35388914 ~ 35389327 (+)
AMCG00009404 NA other downstream 2931467 37293903 ~ 37297009 (+)
AMCG00009405 pfn2,LOC105899220,LOC106598797,LOC105028925 other downstream 2985672 37348108 ~ 37367671 (+)
AMCG00009415 wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084 other downstream 3059581 37422017 ~ 37463505 (+)

Expression


Co-expression Network