AMCG00009349


Basic Information

Item Value
gene id AMCG00009349
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 34399115 ~ 34430416 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009349
TTGAAAGATGCATGAGTGTTATGCAGTCTGGGACCCAAATGATCAAGCTGAAGAATGGATCAAAGGGGCTGGTCCGCCTTTTCTACTTGGATGAGCATCGATCCTGCCTCAGGTGGAGGCCCTCACGGAAAAGCGAGAAGGCAAAAATTACCATTGATTCCCTGTATAAGGTCACAGAAGGCAGGCAGTCAGAAATCTTCCATCGCCACGCTGATGGGAACTTTAACCCCAGCTGCTGCTTCACCATCTACCATGGCAATCACATGGAGTCTCTGGATTTGGTGACCTCGAACCCAGAGGAGGCCAGGACATGGATCACTGGACTCAAGTACTTGATGGCTGGAATCACTGACAAGAATGGAGATGGTCTGCTGAACATTGAAGAGATCTACCAGCTGTTACATAAGATGAATGTGAATCTGCCTCGCAGAAAAGTCAGGCAGATGTTTCAGGAGGCGGACACAGACGAACAACAGGGAACCCTGACCTACGAGGAGTTCAGCGTGTTCTACAAGATGATGTCTCTCCGACGGGACCTGTTTCTGTTGCTCATGTGTTTTAGTGACAAGAAGGATCACCTCACTGTGGAGGAGCTTGCGCACTTCCTCAGAACTGAGCAGAAGATGAACAATGTGACAACTGAATATTGCCTGGATATAATCGATAAGTTTGAAGTctctgaagaaaacaaagagcAGGATGTACTAGGTATTGATGGGTTCACCAGTTTCATGCGAAGCCCAGCTTGTGATGTATTCAACCCGCTCCACCAGGAAGTCAACCAGGACATGGACCAGCCACTGTGTAATTACTTCATTGCTTCGTCTCACAACACCTATCTCACTGGAGACCAGCTCCTCTCGCAGTCCAAGACTGACATGTACACCTGGGTCCTGCAGGCGGGCTGTCGTTGTGTGGAAGTTGACTGCTGGGATGGCCCTGACGGTGAGCCAATGGTGCAACATGGATACACGCTAACATCGAAAATATCCTTCAAAGCTGTGATCGAAACCATCAACAAACATGCCTTTGTGAAGAATGAgtatccAGTCATCCTTTCAATTGAAAACCACTGCAGCATCCAACAGCAGAAAAAGATAGCCCAGTACCTGAAGGAAATATTTGGAGAAAAGTTGGATCTTGGCAGAGTACTGACTAGAGATTCCAAAGAGCTCCCTAGCCCGAACAACTTGAAGGGAAAGATCCTCATTAAGGGCAAAAGGCTGCCGCCATACCTCGCTGCTGATGCGGAGGAGGGGGAGGTGTCAGATGATGATAGCGCTGATGAGATCGAGGATGATTTCAAACTCAAGCACAGCAGTAGTAATGGAAAAAGTGATCACCAGGTGGAATCTTTCATAAGGAAGAAACTAGACTCCTTGTTAAAAGAATCACAGATTGGAGACAAGGAGGATTCAGACAGCTTTTCTATAAGGGCCTTGTTGAGAGCAACGCATGAAGGTTTAAACGTGAATCTTAAACCGAACTCCTGTCTTAAAGAAAGTGGAAAGAAATCTCAAAGCCGTTCCTTCATAagtttttcaaaacacaagAAACACGGGAAGTCCCGAGCGAAGTCTCAGAGCACTGACATCGAAGAGGAAGGACAGCATGAGGCATCAGGGAAAGATGCGGGACAGTCCTACAGAGCGGGCCGTCGGCGAAAGACCATGAAGCTCAGTCGTGATCTCTCAGACGTGGTAGTTTTCACCAACTCGGTCGCCTCGCAGGACATTCTTGACGAAGGGACTCCTGGAAACGTCCTGTCCTTCAGCGAGATCAGAGCCCACCAACTGGTACATCACAAACCTGAACAGTTTATCTTGTTCAACCAGAAGCAGCTCTCTCGAATCTACCCGTCTGCATACAGGATAGACTCCAGCAATTTTAACCCTCAGGCTTACTGGAACGTTGGATGCCAGCTGGtgGCTTTGAACTATCAGACTGAAGGTCGGATGATGCAGCTCAACAGGGCTAAATTCATGGTGAATGGTAACAGTGGCTATGTTCTCAAACCCCAGCCAATGAACAAAGGTTCTTTCAACCCATTCTCTGATGACCCCCTTCCTGCTTATCCTAAGAAACAGCTTGTTCTGAAAATAATCAGTGGCCAGCAGTTACCAAAACCTCCAGACTCAATGCTGGGCGACAGGGGAGAGATAATTGATCCCTATGTTGAGGTAGAAATCATTGGTTTGCCTGTTGACTGCTGCAAGGAACAAACCAGAGTTGTTGATGATAATGAACTGGCTCTGGTGCGCTTCCTAGTCTGGGACCATGACCCCATTGGACGAGATTTTGTTGGCCAGAGGACTGTGGCATTCTGTAGCTTGATGCCAGGTTACCGCCATGTGTATTTAGAGGGCATGACAGAATCCTCCATCTTCATTCAAGTAATGGTCAATGATATCTATGGGAAGGGCAGGCAGCTAAGAGGAATCAAGGGTCTTTTTAACAAGAACCCCAAGAACGGCTCGGTGGACACCAACTCTGGTTTTCAAATCCGCAAGCGCTCCATCAGTGACCACATACTACGCCGCACGGCCAGTGCTCCCGCCAAGGGcaggaagaaaactaaaatgggCTTTGCTGAGCCGCAGTGTGAAAGAAAGGACAGCGAACCAGAGCTGGAGAGCAAAAATGCCATGGAGAGCCATAGACCTAAGAGCTCACTGCACAGACCGGTTTCAATGCCTTTGGAAAAGTTGCTTACGGGAGTCCTTGAACTGCCaacaaatgaaactgaaaaagtcTCAGAGGACAATGATACGCACTCTGGAAACTTATCTTCTGAGACAGGCCGATTGTGCAGCGTAGAGCGACTTAGGTCTGTCTCCGTGGACCTTCTCTTTGAAACATACCCTTCCCTCCAGTCTGAAGATCGGATGCTCTCCAGTAAAGCGCCATGGGAATCCTCCTTAAGGGTTCCTGTCAAAACTTCCGAAATGGAGAAAGTATCTTACCTTGAAATTGGAGGGAAAAGCAGTGAGGAGTGTTTCGATGCCCCACCTCCAAACGAAGAAAACGTCTCTTTCGACGAGGAGGTTTTCAACGATGACAGTTCTTGTAAAAAAACTATCTGGAGCCAACCCAACATCCCAGAAACCACACCTGAGCACCTGGTATCTACTAAAGATGGACCAGAGGACCACAGTTCTGAACATATACAGGCAGAACTACTGCGAAAAAGAGGTGCAATTTTAAACCATATTACAAATGTCCCATTGTGTTCTGTGTCTTCTGTTGATGTGTCGTCAATCCTCTGCATGGAGAAATCAGAACTCCAGTCACCTTACAAATCAATGCAGGAGAGCACCATCTCCCGGCTTATCGATAACGTTTCtttggacaatgagaatgaCACATGTGGCTCAATCTCAGCATTAATTGGCCAGTTTGATACTACCCATGACCAGAGCAACCTTACTGTTGTTTCCAGCATTCAAGGTACTAATAATCACACATTTAGCATAATGTCAGGTTTTTCAAGTACTTTGATATGGGAGCCTAATACACCCCAGAAACCCTGCCTGCCAAGTAAGACCAGCAAAGATGCTTTTCTTGATGCAACATCTGACACAGCTGTGTTCTCTAGCCCGGAGACAACAGATCAATCTGTTTATACCATCCTTAATGAAGACTTCCTGTCACCTACATCTGTATATAATCTTCGAGACCAAACAATACGGAGTATGCAGAttaattcagaagaaaatacacCTGTCGGCAGTTCCTGTACGACCCCTCTGAAAAGCTTCAGTCCAAGACTACGTTCAGATGAGAGAGCCGGTTGGGGACCACAAGGGATTTGCAGCTCAACAGATCGCACTACTTCTGACAAGTTTCTTGTGTTTCCAGACTCTGCCAGCAGCAGCTTAATGGAAGTTGAGGTTAATGTGGATGATGACTCGCAGGACATCACATTGACCTCAACTTGTGCAAACAATCAGTGGACAAGCCAAAGCCCATCACCCTGTAGTGATTCACCACATGACTGGCCCTTAAACAACAGTATGTACCACAACAGCTACCATGTGCCAGATATCAGGCCTGAGAACATTTATCGTAATCATGATGTCTACAGAGGCCTACAAGACCAAAGCTATACTTTACAGGGTAACTACCAGTTGTCAGAAAGCATCCGAACTAAAAGGATCAATAGATTCCAAGGTGACTATCACCTGTCAAAACATTTCGATCCCAGAAAAACACACTCTGTGTTTGAAAGGAATGACTATACGCCCAACTCGGATTGTAATGTACCAAATAACTGTATAGATTACAATGGCCTTGCTGCTCCAAACGCACGTTGCCAAGGGCTGCCACTTCCCAACAGACCTGCCCGTCATCTTTACACTCACCCTGAGCAAGCCCCTCCTGCTGTGCACGTAGCCAAACACCCAAGCCCTGGCAAGTCAAAGAGCCTGGGAGATCTGACATCCGAGGACATATCTTGCAACTTTGAGAGCAAGTACAAGTACATCAGCAGGAGCTTCATCACCCCCAAcatgagggagagaaagaggatgTCAAGCCTAACGAACAGGCCTCAGTCTGCGGACCCTTTAACGGAGCAGCTGCGGAGACTGGTGTCTTTCGAGCCTGATGAGTGCAGCCAGCCTGGGCCAGTGAGCCCCCTGAGACAGGACGACGACTCCCCGAAGATCCTGTCTCGAAAGCTGTCATCTAGAAGCCAGAGCAGGGTACGTCACATCGCCAACCGAGCAAAAGAGAGGCAAGAGGCCAGCAAGCAAAAAGTCCCCGACAGCTGCAGCACAGCTGGAGTAGTCCTGCGAAACAAGCCCTCAGCACAGAATCCCACAGTAAACAGACACTCCACTGGTTCCTACATCGCTGGATACCTAAACCATATTAACGGGGCAGGCATGGAGGACAGGGGATTGCCTGAAGGAGCTTGCACATCATTACATTACAACTATAATGATCACTTTTACACTGATGATTCAGTCCTGCAAACAGATTCCGGGCCCCGGTCTGAGCCGGAGATTTACTTCTTGCTTAGGCTGTAAATGAAGTatacaaaaaaagacattaaaaaaaagctttgttttgttttacatactcCGTTTTTGACACCTTTTATATCTATACATCTCTATATAAATGATGTCCCCTTGTGTAAAGATGTGTTCTATTTTAATAGAAATCTTAGTCTTCCTTAACATTAGGTGTTGTATGTTAGACCGTGCTGTACATATTAGAAAGCAAGTCTGTaatttatagttaaaaaaaaaaggtaaaactaAATTGTGATGTTCAGAAAACTGcatgtgaaaaaacattttgagtaCTACAGCCTATACATGTAACGCATGACTATGCacaattttgtaaatgtttcagtcctgtacattttgcacagtactCATAGCATTGGATGcaatataaattaacatttttcctttctgttggTCATGAATTCAAGATTTTTAAGCACTTctgcatattttaaagcaaaaacgTGTGGagttaaatacttttatttttataattgcttTGATACCAACAGCAAATAATTTCATGATGGataaacttttattattatttcagaggGTTATAGACAGACAAACTGATGGACACAATTTAGGTGGGGGGATAGAGAATAATGTGGTTTTAACAGCAAATTATAAAAGCTGCAATTCCTGTGTTTGATGCATTCTGGAGacaatatactttgtatgagcCACAAAAAGAGGCAGAACCTGCACATTTTCTTACCAATGCAATAAAATTCTCAAACATCTGAA

Function

GO: NA

KEGG:

id description
K19006 PLCH; phosphatidylinositol phospholipase C, eta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009349 True 5768 mRNA 0.45 21 34399115 34430416

Neighbor

gene id symbol gene type direction distance location
AMCG00009346 NA coding upstream 36679 34355739 ~ 34362436 (+)
AMCG00009343 NA coding upstream 145026 34220572 ~ 34254089 (+)
AMCG00009335 ccnl1 coding upstream 265420 34125029 ~ 34133695 (+)
AMCG00009336 NA coding upstream 277504 34119086 ~ 34121611 (+)
AMCG00009338 LOC107692013,LOC106581445 coding upstream 291101 34092726 ~ 34108014 (+)
AMCG00009355 NA coding downstream 72232 34502648 ~ 34503259 (+)
AMCG00009357 NA coding downstream 207112 34637528 ~ 34677384 (+)
AMCG00009360 NA coding downstream 259342 34689758 ~ 34690484 (+)
AMCG00009361 NA coding downstream 289595 34720011 ~ 34720679 (+)
AMCG00009359 NA coding downstream 310817 34741233 ~ 34741959 (+)
G56379 NA non-coding upstream 320276 34045490 ~ 34078839 (+)
G56376 NA non-coding upstream 356856 34038134 ~ 34042259 (+)
G56282 NA non-coding upstream 941943 33456891 ~ 33457172 (+)
G56268 NA non-coding upstream 1117351 33281537 ~ 33281764 (+)
G56262 NA non-coding upstream 1289096 33109739 ~ 33110019 (+)
G56474 NA non-coding downstream 152531 34582947 ~ 34662345 (+)
G56495 NA non-coding downstream 532338 34962754 ~ 34963224 (+)
G56501 NA non-coding downstream 589818 35020234 ~ 35067229 (+)
G56541 LOC103376870 non-coding downstream 1108471 35538887 ~ 35539807 (+)
G56542 NA non-coding downstream 1144630 35575046 ~ 35576926 (+)
AMCG00009345 NA other upstream 29858 34363419 ~ 34369257 (+)
G56368 NA other upstream 367670 34000796 ~ 34031445 (+)
G56369 NA other upstream 380300 34015670 ~ 34018815 (+)
G56060 NA other upstream 2233750 32161760 ~ 32165365 (+)
G55591 NA other upstream 4403677 29995126 ~ 29995438 (+)
G56536 LOC100846954 other downstream 958498 35388914 ~ 35389327 (+)
AMCG00009404 NA other downstream 2863487 37293903 ~ 37297009 (+)
AMCG00009405 pfn2,LOC105899220,LOC106598797,LOC105028925 other downstream 2917692 37348108 ~ 37367671 (+)
AMCG00009415 wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084 other downstream 2991601 37422017 ~ 37463505 (+)
AMCG00009429 NA other downstream 3100406 37530822 ~ 37605124 (+)

Expression


Co-expression Network