XLOC_006034 (inaa)


Basic Information

Item Value
gene id XLOC_006034
gene name inaa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 28675686 ~ 28681036 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011902
GAAGATGAGTTACGGATCAGACCACTACATGTCTTCATCCTACAGAAAATTGTTCGGGGACAACCCTCGTTTTGCCGGCTCTAGAATGAGCAATGTCTCTCCCCGGAGCTCCATGTCCTCCAGCGGCTTCAGGTCTCAGTCTGTCTCCCGCAGCAGCGCCTCTCCTGCGGGCTACTATAAAAGATCGGGCCGGTCATCTTCATTCTCGCCGGTCCATTTCGACAGCGTGGATTTCTCTCAAACCTCTGTTTTGAACAACGAGTTTAAAATCGTTCGAACCAATGAAAAGGAACAGCTGCAAGGACTCAATGACCGGTTCGCGATGTTTATCGAGAAAGTGCGCAATCTGGAGCAGCACAATAAAGTGCTGGAGACCGAACTGGTGAGTCTGCGCCAGAGGCAGAACGAGCCGTCCAGACTTGCTGAACTCTATCAGCAGGAGATCCGGGACCTGCGAGCTCAGGTAGACGAGCTGAACAACGAGAAATCGCACATTCTCATTGAACGCGACAGCATCGAGGAAGACTTGCAGAAACTTCGAGGCAAGTTTGAGGAAGAGATCCGAGCGCGCGAGGAGGCAGAGCAGACGCTCAGATCCTACAAGAAAGATGTGGATGATGCCACCATGGTCCGCGTGGACCTGGAGAGAAAGGTCGAATCACTTTTAGATGAGATAAATTTTCTGAGGAAGGTGCATGACGAAGAGGTGACCGAGTTGACTAATATGATCCAGGCGGCACAGATATCTGTGGAAGTGGAGTTGTCCAAGCCTGATCTGACCTCGGCCCTCAAGGACATTCGCGGCCAGTATGAGACCCTCGCGTCTAAAAACCTGCAGTCTGCCGAGGAATGGTACAAATCAAAGTTTGCTAGTCTCAATGAACAGGCCACCAGGACCAACGAGGCCATGAGGGCCACTAGGGAGGAGGTCAACGACTACCGGCGACAGCTACAGTCCAAAACCATCGAGATTGAAACCCTGCGAGGCACAAACGAGTCACTTGAACGGCAGATCCGCGAGATGGAAGAAGCACACAATGCAGAGGTCGCAGGTTATCAGGAAACAATTGGGCAGTTGGACCTTGAACTTCGAAATACTAAGAGTGAAATGGCCCGTCACCTCAGAGAATATCAAGATCTCTTGAACGTCAAGATGGCATTAGACATTGAAATTGCAGCATACAGGAAGCTACTGGAAGGTGAAGAAACCCATTTTAGTTCTGGAGTGACTTTCTCCAGCACACCCAGCATCACTTATGGCTATCAGAGCCGCTCTGCTTTCACCTCAACCCGCAATcctaaaaaagagagagaggaagagggaCATCCCAAATCCAAGACAGCAGCCAAGCGGGAGGAAAACACAGATGAGAACGTTGGGATTAAGAAGACAGAAAAAAATGATGCTGTTGATGTTAATTCTAACTAAAACGTTAGGGTTTACAAATCTAGCGATTTTTCCCAGCAGTCTTTTGAGTGTTTGGCAGAGTAATCACTGTTTGTAGCTGAAAACTGCCGTTTGATGTTTATGGTAATGGGTAAAATCAAACGTTTAAGATATTGTTATGGTGATAACAACTTAGACCTCAAATATTGCCTGTGTTTCTTAAATGTAGTTTCAGAGAGTTTTTAGCCTCGTTGATGATGTTAGGATTATAAATGTGAGCCTCAGTATGGTGGAATGATTAAGATATAACCAGCATTAAATCTGATTATGGATAAATTCACAATATTATTGAATGTTTGTTGGTAAGCACCATGGCATATTACAAATAAGGGACCAAACCACTGATTTAACTGTAACACATATATGCCTTAAATACAATAAAGTCAGTCATTAAAAT

Function

symbol description
inaa Predicted to act upstream of or within nervous system development. Located in intermediate filament. Is expressed in nervous system and optic cup. Orthologous to human INA (internexin neuronal intermediate filament protein alpha).

GO:

id name namespace
GO:0007399 nervous system development biological_process
GO:0005882 intermediate filament cellular_component
GO:0005883 neurofilament cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060531-65 Predicted to act upstream of or within nervous system development. Located in intermediate filament. Is expressed in nervous system and optic cup. Orthologous to human INA (internexin neuronal intermediate filament protein alpha).

Ensembl:

ensembl_id ENSDARG00000011862

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011902 True 1844 mRNA 0.46 3 28675686 28681036

Neighbor

gene id symbol gene type direction distance location
XLOC_006033 cnnm2a coding upstream 32426 28618086 ~ 28643260 (+)
XLOC_006032 borcs7 coding upstream 59793 28612313 ~ 28615893 (+)
XLOC_006031 wbp1la coding upstream 78921 28580357 ~ 28596765 (+)
XLOC_006029 fbxw4 coding upstream 100227 28512530 ~ 28575459 (+)
XLOC_006030 NA coding upstream 108200 28565179 ~ 28567486 (+)
XLOC_006035 polr1c coding downstream 9319 28690355 ~ 28694924 (+)
XLOC_006036 si:ch211-67n3.9 coding downstream 20197 28701233 ~ 28774347 (+)
XLOC_006037 CU640488.1 coding downstream 59199 28740235 ~ 28740369 (+)
XLOC_006038 nsmce4a coding downstream 104778 28785814 ~ 28796637 (+)
XLOC_006039 NA coding downstream 127056 28808092 ~ 28817882 (+)
XLOC_006027 NA non-coding upstream 192280 28475601 ~ 28483406 (+)
XLOC_006025 CR762431.1 non-coding upstream 261127 28406913 ~ 28414559 (+)
XLOC_006024 NA non-coding upstream 393363 28264236 ~ 28282323 (+)
XLOC_006022 dre-mir-30e-2 non-coding upstream 880477 27795130 ~ 27795209 (+)
XLOC_006042 NA non-coding downstream 234502 28915538 ~ 29097526 (+)
XLOC_006043 CU639469.2 non-coding downstream 243810 28924846 ~ 28924965 (+)
XLOC_006044 NA non-coding downstream 402051 29083087 ~ 29083291 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_10255038_10257789 INAA coding CI01000012 null 10254900 ~ 10257802 (-)