AMCG00009388


Basic Information

Item Value
gene id AMCG00009388
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 36733179 ~ 36767720 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009388
ATGGAAGGGGGCAACGAGGTGGACCTCTCTAATAATAACATCACCCCTCTATGGAAGAGGAGGTCTGCAAACCAGTCCGGGCCCAGGGACAAGCCCAGGCCTCTCAGCTACCAGATTGGTGGGGTTTTAATGACTGATTTTCCAGTGGAGGACCGATGTGCCTTTACGTTGACGCAGCCTGCCGAGAAAATCGTGGCTTCCCCAGGAAATACAAATGTCTTCAAGCACGTCTTGAACAAGCCAACCCGCAAGACGAGAGTGGTCAGGAGCATCAGCATTGGCCATTTGTCCAACAGGAAACTGTCTCTGCCCAAACGCAAGTCAGAGCCCAGCAAGCAAGTTGACAACCGGGCGTATCAAACTCTGGACATAACTAAAGGTGGGGACACCGGGTCCCGCTTCTGTCAGGAGAAACGGGTCTTAGATGAAGGGAAAAAAGATTTGAAAAAGCGACTCTCTGTCCCCGTGACGTTGACCTCGCAGAAGGACCAGATTGTATTCAGCTCCAGCGCGGGGGATTCGCCTACGGGGAGAGCCCCCACGCCGccatgcaacaacaacaatgtccTCTCCATCCCCCATCAGTCACCCCCTTCCCCCAGGAATGCGGGCAGCCCCTCCACGTGTGCCCCGGCCCCGGTGCCTGCCCCTGGGGAGAGGGTGGCGCTGCACAGGCAGTCGTCTGGCACTGCCCTGAGCCCTGACAAAGGCCCCTCCATCATGTTGAGCACAAACAGCCCGGCGGCACTCAAGATGGGGAAGCAGCAGATCATCCCCAAGGGGCTGGCTTCAGACATCAGACTGAGCAAGAACAGCCAGGGCGGCCACAGTCTCCTGGAGCCCACCAAGAGAGCGCTCCGGGCCCTCAGCTTAGTAGAGACCAGCAGCAAGTCGCTGTTCTCCATGGGCGACAAAGAGGGGGAGGCAGATGCAGACCTGGACAGCCCGGGGACTCTGAAGAGGGGGCTGAGGTCCACTTCTTACAGGAGGGCAGTGGTCAGCGGGATTGACCTGGACAGCTCTGCCCAAGCCGCTGAGATGAAGGGCAAGCGGCTGTCGCAACCCATCTTGAGAGCTGTGGAGGAGGACAAGGAGAAATTCGCCAGTCTGGGAAAGGGCAAAaagaaaggaTTGCCGACACAGAGAACCTTTGACAGCGAAGAAGATGAGGTTCTATACCAGAACTACAAGGAGAAGGCTTTGCATAACGATTCTGACGAGGATGCCGAACCTAAGGAGCAAAAATCTGATGAAAGGATTGTTGTTCAATACAAGCCACTGAGGTCCATGTGGAGCCAGCTCACTGTGgtaaaaaaaaatggaatatcCGAAAGCCTGAACCAGGAACAGAGGAAGAAACAAGAGGCTATTTTCGAAGTGATTTCGTCTGAGCACTCCTACCTCCACAGTCTGGAGATTTTGATCCGGTTGTTTAAGAACTCTAACGAGCTGAGCAGTACGATGACCAAAACTGAGAGCCACCACCTCTTCTCCAACATCGTCGATGTCTGTGAGGCGAGCAAAAAGTTCTTCAAAGAGCTGGAGGACAGACATCAGCAAAATGTTGTCATAGATGACATCAGTGACATTGTCGAAAAACACACCACTCTAACCTTTGAACCTTATGTGACGTACTGTTCCAATGAGGTGTACCAGCAGCGGACACTCCAGAAGCTTCTGACTACAAATGCAGCCTTCAAGGAAGTGCTTTCTAAAATTGAGAGCAACCCTGACTGCAGGAACCTCCCCATGATCTCCTTCCTCATCCTTCCAATGCAGCGCGTCACTCGACTGCCTCTTCTGATGGATACCATCTGTCAGAAAATACCAAAAGACACTGCAAACTATGATACCTGTAAAAACGCATTTCTGGCTGTGAGCAAGTTAGTCCGATTGTGCAATGAGGGAGCCAGGAGGATGGAGAGGACAGAGATGATGTACACTATAAACTCCCAGCTGGAATTTAAGATCAAGCCCTTCCCCCTGGTGTCATCGTCTCGCTGGATGGTGAAGAGAGGGGAGCTCACGGCCTTCGTCGAGGACAACGGCATCTTCTTAAAGCGCACATCCCGCCAGCAGGTCTACTTCTTCCTGTTCAACGACGTCCTCATTGTCACCAGGAAGAAAAGTGAGGAGAGTTACAATGTGATCGATTACGCACTGAGGGACCAGATCTCTGTAGGCCTGTGTGAAGGTGAGGAGGTGAACCTGTCGCCTGCCAAGACCTCGCCTGGGATGCTGTACTCACGCCAAGGATCAGTGAATCACGTCTTCAGGCTCTCATTCCTTAGCAACCATTCCAACGAGAAAGTGCAGATGATCCTCGGAGCAGAGCTGCTGAATGAAAGAGCCCGCTGGATTAGTGCCCTGGGACAAAGCAGCAGCGATAAGGAAACCGACAGGACAAAACTGATGCAAGTGGAGATCACCAGGACCTACACAGCCAGGCAGCCAGATGAGCTGTCGCTGCAGACGGCTGATGTGGTGCTGGTGTACCAGAAGGTTTCTGATGGCTGGTATGAAGGGGAGCGCCTGAGAGACGCAGAGCGAGGCTGGTTTCTGTCCGAATGCGCTCGTGAGATCACCTGCCAGGCCACCATCGAGAAGAACATGCAACGGATGGACCGTCTGCTCGGACTGGAAACCAATGTTTAA

Function

GO: NA

KEGG:

id description
K13744 ARHGEF26, SGEF; Rho guanine nucleotide exchange factor 26

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009388 True 2655 mRNA 0.53 14 36733179 36767720

Neighbor

gene id symbol gene type direction distance location
AMCG00009382 NA coding downstream 69448 36640234 ~ 36663731 (-)
AMCG00009384 NA coding downstream 109682 36620406 ~ 36623497 (-)
AMCG00009385 NA coding downstream 156706 36576207 ~ 36576473 (-)
AMCG00009383 NA coding downstream 182493 36536166 ~ 36550686 (-)
AMCG00009374 NA coding downstream 824667 35907212 ~ 35908512 (-)
AMCG00009389 rap2b coding upstream 72396 36840116 ~ 36840337 (-)
AMCG00009391 p2ry1 coding upstream 105952 36873672 ~ 36874729 (-)
AMCG00009390 mbnl1 coding upstream 132573 36900293 ~ 36921139 (-)
AMCG00009394 NA coding upstream 321063 37088783 ~ 37097327 (-)
AMCG00009407 NA coding upstream 507742 37275462 ~ 37277549 (-)
G56612 NA non-coding downstream 339661 36096808 ~ 36393518 (-)
G56611 NA non-coding downstream 627760 36080635 ~ 36105419 (-)
G56570 NA non-coding downstream 843497 35889450 ~ 35889682 (-)
G56564 NA non-coding downstream 918965 35782424 ~ 35814214 (-)
G56549 NA non-coding downstream 1142087 35590768 ~ 35591092 (-)
G56710 p2ry1 non-coding upstream 101828 36869548 ~ 36871823 (-)
G56742 NA non-coding upstream 400274 37167994 ~ 37168244 (-)
G56795 NA non-coding upstream 433312 37201032 ~ 37267831 (-)
G56818 tsc22d2,LOC105899227 non-coding upstream 532824 37300544 ~ 37367669 (-)
G56831 LOC106583953,LOC106560594 non-coding upstream 650694 37418414 ~ 37422521 (-)
G56568 NA other downstream 860582 35872123 ~ 35872597 (-)
G56546 LOC103376870 other downstream 1193369 35538887 ~ 35539810 (-)
AMCG00009347 gmps other downstream 2370838 34334261 ~ 34362341 (-)
G56438 kcnab1a,kcnab1,LOC107671078,LOC107675612,LOC107566585,LOC108263953 other downstream 2417171 34239484 ~ 34316008 (-)
AMCG00009342 kcnab1 other downstream 2459095 34227274 ~ 34274084 (-)
G56800 NA other upstream 448240 37215960 ~ 37220076 (-)
AMCG00009409 selenot,LOC107681817,LOC106599070,LOC107708642 other upstream 512828 37280548 ~ 37285365 (-)
AMCG00009408 NA other upstream 517856 37285576 ~ 37394988 (-)
AMCG00009417 NA other upstream 699534 37467254 ~ 37476035 (-)
AMCG00009437 NA other upstream 1121782 37889502 ~ 37908968 (-)

Expression


Co-expression Network