AMCG00009390 (mbnl1)


Basic Information

Item Value
gene id AMCG00009390
gene name mbnl1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 36900293 ~ 36921139 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009390
tatttttcttctctctgcttCAGGGCCGCTGCTCACGAGAAAACTGCAAATATCTTCACCCTCCTCCccacttaaaaacacagttgGAGATAAATGGACGCAATAACCTAATCCAGCAGAAAAACATGGCGATGCTAGCTCAGCAGATGCAGCTCGCCAACGCCATGATGCCTGGTACTCAGTTACAACCCATGcCAATGTTCTCCGTCACACCGAGCCTAGCCACCAATGCCACAGCTGCAGCGTTCAACCCTTACCTGGGTCCCGTGTCTCCGGGCCTGGTCCCCGCAGAGATCCTGCCCAGCGCCCCAGTGCTGGTCACAGGAAACCCGGGCGTCCCCATGCAATCTGCTGCCGCCGCCGCAGCTCAGAAGCTCATGAGGACAGACCGGCTGGAGGTGTGCCGGGAGTACCAGCGCGGGAACTGCACAAGAGGAGAGAACGACTGCCGGTTTGCCCATCCCTCTGACAGTGCAATGATTGATACCAATGACAACACAGTCACTGTGTGCATGGATTACATAAAGGGGAGATGCTCCAGGGAGAAGTGTAAATACTTCCACCCTCCTGCGCACTTGCAGGCCAAGATTAAGGCCGCCCAGCACCAGGTCAACCAAGCCGCCGCTGCTCAGGCCGCAGCAGCTACTGCAGCCGCCATGGGGATACCGCCTGGCGTCCTCCCTCCATTACCAAAGAGACCTGCACTTGAAAAAACCAATGGTGCCACCACAGTCTTTAATGCTGGTGTTTTCCAATACCAACAGGCTCTTGCCAACATGCAGTTTCAGCAACAAACCGCCTTTATCCCATCAGTTCCCATGATGCACGGTGCTTCGCCTGGCAATGCAGCCACATCATCTGCCACAAGTGTTCCCTTCGCAACAGCCACCGCCAACCAGATTCCAATAATATCTGCAGATCATCTGACTAGCCACAAGTACGTTACTCAGATGTAGAAGGCTCTATTCAAAACAatcatagaaatgaacaaataaacaaacaaaaatgtgtgctgGTATACCGATCAGGACAAAAGATCATCCATCGTGTAAATAACATGGAAAACCACAGCACCCTTCTGCAGGAAATCGTTGATGTAATGCATGCTAACAACAGGGACTGAAGGGCAGAAGATATGAACATATATACCACACACCTGACACCTATATTCTCTGTATCTTCAACTAATCTTAGAGCTGAGGTGAACTGTGTTACTGTCCAGTATACAGTACTGTCTGCCTTTTCTACTTTAGTATTTATGCATACATTCctatatatatgcataaataaTCCATTACCATACTTGTTGAGTGAAAAGGTAGACCGTGGTGTAGTTAATCATGTCTATCATGTATTGGTACGTCTGTAGACCAagaaatactttttgtttttgtttctaattatGATCTATTTCTTCTTATggtttacaaagaaaaaaaaagtgcaccttgtatttaaagaagaaaaaataaaatgccattatAGATGACTCAATTGTGCATGCACAGTGTTCTACATGTAAGGGTTCTATTTTTTAACGTTCTAGATTGTAAGAGGAAGTTCAGGAGGTTTATGACAGATGAATGTGCTGAGCAAAAACCACAGCTGTGTATAATTTAAAGCACATCACAGCTTTAATTACCATGTGGTAGGATACACATTAAGTGCCATACACTGTACATCCAAACTAGAGTATTATCCCAGCAGTGTTATTGTGTTTACCTTATcgccacaatatatatatatatatatatatatatatatatatataatatttttaattattattaatttgttttgcctAGTGCTATTTATTGATGGCAGCGTTTTGATTTTAGTGTCAAAATCATTTCAGAAATggtatattttacttaaaaatggAACAGACCTATGCAATGGTCCGATTGAAAGTGCAAAGCAGTGTATGTAAATACAGAATAGTACGTACggtacttttctttttactctCGTAATTGGATGCCATTTTCTGAGATGAGATGCAAAAGGGTCTTGCAGGTTACTTTGCTCAAATTTCTTAGAAGTCAACAGACTATAAATGCTTTGTAGAGAAGGGTTTTGCTTTGAGCTGGTTGTTGCGTCATAGTCGCTGTCTCAATGATGGCGACTCTAAATGGGATGAAAGAAGCACTGTTGAAAGATGCATGACAAACCAAATTATTAGGTAAATTGAGATGTTTAAAGTAGTTACAGGGTGGGATATGTATTCTGGTGAATTTtatatgtgattttattttattttcttctttttttttaagattaactGCATATAGCCTTAGACAGcctttaagaaaaatacaacaaaaatgtttaattagttgtgtgtgttttttatgttttatttttttaatgggttCATCCAAAGGTATTCCTTTTTTAAGATTGATTAGTGGAGCTCTGTTCAGCAAATGTTAAAGGTTTGCTGAAGTGGGGTGATATTCCTGAGAAATGAGCATGGAATTGGAAGAAGTGCGAATTCTGTTCTAGAATTCTCCGTACTTCCGAGCATACGGCAGGATATTAACCAGGAGTGATGTGTGGGACAGTACAGGGATGATGTGTTGATTTTACTGATTGTACTGTACATCTATTAAAGCCTTAGATTACATTACGGGTTTGAgcccattaaaatgtaatttcaatcATGATATAGATCATACACTCAGcattttattgtagtttttacatgtagaattgtatgtttttttctcattacattcattttttgttttgtatgtttcttacattttattaggttgttttcattttatattacttAAAGGTTGgatactgttttaatatttagtttgtaGATTTTTGTCTTATTAGATTTTACTGATAACTTTTGTagaaaattgaatatattaatagtttttttcatgCCATACTCATTGTTTTGACTTTACATGTAGTTGCAGATTTAAGTATTCGTATTATTGTAAACTaaatgacttttattttttagtgaTATGTAAGAatgtcagtctttttttttcttgtctgtttgCATTCTTTGAACAAAGATCTTTTATATGGATATCTTACAATGAGGTAATCATTGCTAAGAAAGAAGTTAAGCTGTTGCTATGGCAACAAATGTGGCTGACAATTGagtaatattttaatgatttattttgtttgttactaGTCACTATtatatggagagagaaaaaaaaatctagttcCTAGATGTTAGAATAAAAGTTATTTTCTACTGTATCCATTTCAAAtagtaaaatattgtttaaatattttttaaatccctggATGTCAGGCCTTgtttaacaaaaaagaaaaaaaaaaaagctgcataaTCAATTTATCAAGGGGCtttgtgaataattaaaataaataaacaaagtttacgtataaaaaatatataatcactgAGCGTGCGAACTCTTGAACGTTGATTATGCTGCAGTCGAAAGTGTTGGAACCTAAGGGAAGAAGGTTGACTTTTTGCACTTCTGTATATAGtcaaaaaagaaagatacatgtataataataagatcttattttgaataaaaaaatgtctatAATTACAAGGAATTTTGttaggttattaaaaaaaaaaagtgacaggCTGAACAAAATTGCTTGCATAAGTGGCACGGAGTCAGCACTCTATACCCCTTTCAAAAACGGCAAAATGTTGCTATGCTTTTTTGTCAGCAGCTTGTAGTTTGCCAGGAAACTCTTCTGCAGGAAAGATTTGCCATCTTCACAAAACTGTGACTGACGAATACTGCTCTGCTCCAAACCTGCCTTACGATCATAACTAAAGAGCAGGTTATGCCTACCACTGGGTCAAAATCACAGActagtttattttccttacatTGGTTGAAAGGATTGCATGttcaacaatacaaatacaaaataaaaaacaaacattgaaaacagCAAGATATATTTATGAtacacagtatattattattataaagtactaaggaaaaaaagcagtggtttattgttaaaaataattaaaatattctctTTCACCAATTCAAAGTTCAAAAAGGCACATCATAGCTCTAGTGTtcacattaatttgttttctgttgtaaaCTGTACTTTTAGCAGATGAAATTAagtaatacaaacaaacaggaaacaaaacagagtcTGGTCAAATCTACTTCTCACCAACATCTAGGGTTATAAGAACACATACAACTTTAAGAGCCAAAGTTCTTGTTTTTTCCCTTAACCCGCTATTCATATCCAACAGTCTTATAACTTGGTAATGCTTGTTATATTATTGCAAACAGAAACCTTCATCTGCTGAAAGGCCAGCTTCTTGGATTTTTTACTGTTGTGTAATCAAAGAACTTACTTTTTGCTTGTAGTTGCTAAAATAATGTACTCTGTCTGCTGCAATTTGTTTTATGCTAATTTTATTATTCCTGCTTATATTTGATTCTTGCtgttatggaaaaaaaaattaaataaaataaagtggatTTGCTCTAAAA

Function

symbol description
mbnl1 Predicted to enable RNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to be active in cytoplasm and nucleoplasm. Is expressed in several structures, including blood; eye; gonad; heart; and swim bladder. Orthologous to human MBNL1 (muscleblind like splicing regulator 1).

NR:

description
PREDICTED: muscleblind-like protein 1 isoform X5

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K14943 MBNL; muscleblind

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009390 True 4496 mRNA 0.36 7 36900293 36921139

Neighbor

gene id symbol gene type direction distance location
AMCG00009391 p2ry1 coding downstream 25564 36873672 ~ 36874729 (-)
AMCG00009389 rap2b coding downstream 59956 36840116 ~ 36840337 (-)
AMCG00009388 NA coding downstream 132573 36733179 ~ 36767720 (-)
AMCG00009382 NA coding downstream 236562 36640234 ~ 36663731 (-)
AMCG00009384 NA coding downstream 276796 36620406 ~ 36623497 (-)
AMCG00009394 NA coding upstream 167644 37088783 ~ 37097327 (-)
AMCG00009407 NA coding upstream 354323 37275462 ~ 37277549 (-)
AMCG00009411 NA coding upstream 357747 37278886 ~ 37279752 (-)
AMCG00009406 tsc22d2,LOC107097579,LOC107727513,LOC105899227 coding upstream 379389 37300528 ~ 37305420 (-)
AMCG00009412 LOC103360179 coding upstream 405616 37326755 ~ 37332027 (-)
G56710 p2ry1 non-coding downstream 28470 36869548 ~ 36871823 (-)
G56612 NA non-coding downstream 506775 36096808 ~ 36393518 (-)
G56611 NA non-coding downstream 794874 36080635 ~ 36105419 (-)
G56570 NA non-coding downstream 1010611 35889450 ~ 35889682 (-)
G56564 NA non-coding downstream 1086079 35782424 ~ 35814214 (-)
G56742 NA non-coding upstream 246855 37167994 ~ 37168244 (-)
G56795 NA non-coding upstream 279893 37201032 ~ 37267831 (-)
G56818 tsc22d2,LOC105899227 non-coding upstream 379405 37300544 ~ 37367669 (-)
G56831 LOC106583953,LOC106560594 non-coding upstream 497275 37418414 ~ 37422521 (-)
G56861 NA non-coding upstream 594830 37515969 ~ 37517654 (-)
G56568 NA other downstream 1027696 35872123 ~ 35872597 (-)
G56546 LOC103376870 other downstream 1360483 35538887 ~ 35539810 (-)
AMCG00009347 gmps other downstream 2537952 34334261 ~ 34362341 (-)
G56438 kcnab1a,kcnab1,LOC107671078,LOC107675612,LOC107566585,LOC108263953 other downstream 2584285 34239484 ~ 34316008 (-)
AMCG00009342 kcnab1 other downstream 2626209 34227274 ~ 34274084 (-)
G56800 NA other upstream 294821 37215960 ~ 37220076 (-)
AMCG00009409 selenot,LOC107681817,LOC106599070,LOC107708642 other upstream 359409 37280548 ~ 37285365 (-)
AMCG00009408 NA other upstream 364437 37285576 ~ 37394988 (-)
AMCG00009417 NA other upstream 546115 37467254 ~ 37476035 (-)
AMCG00009437 NA other upstream 968363 37889502 ~ 37908968 (-)

Expression


Co-expression Network