AMCG00009397


Basic Information

Item Value
gene id AMCG00009397
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37244233 ~ 37249694 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009397
CCCGGGACTAACTAAAATGATTTCCAAGCCCCCTTAAACCTGCCCAATGAGCCGGAAGGTCAGCTGTCGTCATGTTTCCCGGAGAGGCGCTCTGAGAAATGGAAACCTTTGGTTACCTAGAGACGGAGGGGCGCAAGAAGGTGTTGTAACCCAATACATGAGGGGCATTTGGTGTAGTAACCAAAACCCCAAACTGTACCTGTCTGTAGCCTAGACTTCTAACTGACGATTACAACAGACCAATCCTAATTTCAAAAACTGGGACGGTTAAGTTTTGAAGTCACAGTGCTGTCTGCAAGATGACAAGAATGGGGCACGGTTTGGAGCCGGGGACAAAAGGAAAGCGGTGAGGTAAGATGCCTGAACAGAAGTGACTGCGGCACTGATCACACTGGGCTGCGATATTCGTCAGAGCAACATGCCGAGTCGACAAAAGAAAGTTATTTTCTGCTTAGGAGGCCTGTTGAGCTTTGCCTGCGTTCTGGTTTTGGCGGCTGCTATGGGAACCCAGTTCTGGGTTCAAGGGACCATCCTGTGCAAAACCGGAGCCCAGCTCGTCAACGCCACAGGACCCGAACTGGACAAATTCATTGGCCAAATCAACTACGGACTTTTCCACGGGCAGAGACTCAAGCAGTGTGGTCTGGGCGGACGACCCTTCCGCTTCTCCTGTTGCTGTGGCTGTCTGGTGATGATCCTCTTCGCCTCGGAAGTAAAACTCCACCGGCTGTCGGAGAAAATCGCAAACTATAAGGAGGGAATCTTCGTCTACAAGACCGACAGCGAGCAATTCGACCGCTCCTTTTGGATCATTCTGTTCAGCCTGTCCGTGCACGTGTTGAACATCCTCCTCATACGGCTAGCAGGAGTCCAGTTTCCCTTTCAGGAAACGAAGGAGTCCGACGTGACCACTGGGGCAGCGGATCTCATGTACTGAGGGTGTCTTTGTCTGGGGCTGAGCGGCTGGTATCCTGATACTGCCGATGCTGTTACCTGTTCTCATTAGGCCTCTTCCGGGCATCAGTTTTTCCAGCGTATTTGCCATTGAAGAGTCATGCTCAATCTAAGCCCACTTATCACCTTCTTTTCTTTCCAGATGAGCTGTCTTTCAAATGATAGCCGAACACTGTTGTACAACTGGGGTGCTTGTGTTGCAGTATTAGGGAAGGCAGATAATGATCTTAAATCACAATGCAACGGTCATTGTTTCCACTCTGGTCACACTGGGCAGCTCCATAAATTACTTAGAAGAGCAGGTTGGTCCTAGTGGGCACGCACTTATGGCCCAGTATGTTGTAGAACTGTATTGGATTCTCCAGGATTTTATTCACagttctgtctttttcttttcttttcttttttctcgtTAGCAattttgttgtaaatatattcaTCACTTACAAGTTTTTTTGATATAACATTGAGAGACTCGATCATGTTTGACTTGTATTCTGTGATGCAAGGAGAATTTTGCTAATCAATTTTCTCAGTACATTTTCAGGGTaaatcttttttcttccttttttagtAAACAATAGCGTTACACCACCAGTTGGATTTGTTTGTGCTTAGAAGCATCAGACTAAAAATGTACTGCTTTTGGTCTCATTCACAAAAATTATCCATGTCCTTTGATATTTTGTTGCACGTTTCACTGGAATGATGTTTCATTTTGTACTTCTCTAGATATATTCACAATTCTACTTGCAAATGGGAGAAATAACTTACTCTGGCTTGAGCTCTAACAACACTGTTGAAGTCCATTATCAATCATGATTGgtatatgttaataaaataatatattttagaatagTTTTTTAGAAGTGccaattttgtattattttttatccctTATTAATGTATAAGAATAAAGCAACCAGAATGAAAGTAGCTTTATCATAAAATTTTAATAGTAATTTGGTGTTGTATCTAGATTTATTTCCTgctttcatgaaaataaaacatggtttaaaaatacTTCTGCTCCTGCTGTTAAGAAAAGATTGATGTGGTGTACTGCTTAAGTCATTGTACATTCTAacacagtggttctcaaccc

Function

GO: NA

KEGG:

id description
K23841 CLRN; clarin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009397 True 2059 mRNA 0.43 2 37244233 37249694

Neighbor

gene id symbol gene type direction distance location
AMCG00009403 NA coding upstream 9639 37217086 ~ 37234594 (+)
AMCG00009402 NA coding upstream 27258 37216031 ~ 37216975 (+)
AMCG00009399 NA coding upstream 37821 37192505 ~ 37206412 (+)
AMCG00009401 NA coding upstream 51736 37184624 ~ 37192497 (+)
AMCG00009396 NA coding upstream 99151 37133229 ~ 37145082 (+)
AMCG00009400 NA coding downstream 4245 37253939 ~ 37261404 (+)
AMCG00009395 siah2,LOC105023934,LOC106567892,LOC108431284,LOC106603586,LOC107587204,LOC107732330 coding downstream 12857 37262551 ~ 37266023 (+)
AMCG00009398 NA coding downstream 18670 37268364 ~ 37277885 (+)
AMCG00009410 NA coding downstream 48896 37298590 ~ 37302176 (+)
AMCG00009413 NA coding downstream 156154 37405848 ~ 37410371 (+)
G56754 NA non-coding upstream 49145 37193726 ~ 37195088 (+)
G56747 NA non-coding upstream 55455 37188568 ~ 37188778 (+)
G56712 NA non-coding upstream 214691 37029206 ~ 37029542 (+)
G56694 NA non-coding upstream 269172 36900293 ~ 36975061 (+)
G56698 NA non-coding upstream 368835 36875078 ~ 36875398 (+)
G56775 NA non-coding downstream 36149 37285843 ~ 37291665 (+)
G56982 NA non-coding downstream 814096 38063790 ~ 38068153 (+)
G56995 NA non-coding downstream 880388 38130082 ~ 38133966 (+)
G57036 NA non-coding downstream 953100 38202794 ~ 38280479 (+)
G57161 NA non-coding downstream 1378225 38627919 ~ 38628135 (+)
G56536 LOC100846954 other upstream 1854906 35388914 ~ 35389327 (+)
AMCG00009345 NA other upstream 2874976 34363419 ~ 34369257 (+)
G56368 NA other upstream 3212788 34000796 ~ 34031445 (+)
G56369 NA other upstream 3225418 34015670 ~ 34018815 (+)
G56060 NA other upstream 5078868 32161760 ~ 32165365 (+)
AMCG00009404 NA other downstream 44209 37293903 ~ 37297009 (+)
AMCG00009405 pfn2,LOC105899220,LOC106598797,LOC105028925 other downstream 98414 37348108 ~ 37367671 (+)
AMCG00009415 wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084 other downstream 172323 37422017 ~ 37463505 (+)
AMCG00009429 NA other downstream 281128 37530822 ~ 37605124 (+)
AMCG00009428 NA other downstream 358611 37608305 ~ 37616696 (+)

Expression


Co-expression Network