AMCG00009400


Basic Information

Item Value
gene id AMCG00009400
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37253939 ~ 37261404 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009400
ATGGAAGAAAATGCGGACAGCACTGAGCATGCCTATCACAGCGGGGAACTCAATGACATCGCTAGCAGAATTTGTGACCTGGACAAATGGAGGGAAATCTTCAACTCCCGAGGGTTGGAATTAAAAGATGGGATGGTTAAGCCTATCCCTCTGCCGCTTTCACCTGCCCAAGCTATGGAAAGCTGTGAAGAGGCCTCAGCCCCTCCCAGGAACCTGGAGCCCTCAAAGCTGAGCTACATTGAGATCCTGCAGGAGGAAGTGAAGCGGAACCAAGACAAACACCAGGATAGCCACAAGTCTGAGGAGGATGGGGAGGACACGGTGGGCAAGCCTCTGTCCTCCTGCAACAAACCTCATGGGCAGCTCTCCTCTTTCTCGGTGCCTTACTCCATCCCGAACGCCCTCCTGGTGTCGCCAAGTCTGGGAGGCACGCCGGTCACTCTGGAGATGGCAGTGgaCCTCAGAATGATATTGTTCGGCAGCACTTTTCACATCTTCAACTACGAATGGAAGAAATCCTACTTTAAGTTTCGTGAGCCTTTCTCAAACTTGTCGTATGCTCTGGAAGCAGAACGCGGCGGAGCAAGAGCCATCCAGATGGCTATACAGGCTAACATCATTAAATACCTGCTCTACACAAGAAACAAGGACACTGATAACAGCCACTTGCAAAGCCTGCATGAAGTCACAGAGAAGGAGCAGGAAAAAGCGCTGGCTGCAGCTCTGACGGATATTCTGTGGGCAGCGGGAGAGGGGCAGGGCAGCTCGGTGTGTCTGGTAACCCCAGACTGCAGTTTCAGCCCCAACCTAGACTACAAAGTGGACAACTTCACAGAGAAGGCAAGTAGCAGACCAGGTAACAGgCTAAGAGAAGACCTAGACGCCACCACTCCTCACCTCTTAAATATGAGTCTTGGGAACTTTGTTTGTCGGCAGGCCCTGGTGAACCTGATGCTGACAGGCCGAGCCAGTCCCAACATGTTCAATGGCAATGTCCAGTACAATGCCCAGGGCGAGCTCCTGGCACAGCCGCTGCACGGGGTCCTGAGCCGCAGTGATGTGGGCTACCTGCACTGGAACCGGGAGCAGCTGGAGCAGGACAAGCTGCCCACAGTTGGGAGCATGTTGAAAACCCCCAAACTGCCCATCTGGCTGTGCTTCATCAATGGAACATACAGCGTGATATTCAGCACGAACCACACCCACTCACATCACTGGGAGGAGGACCCCAGTCCAGGGAAGGTGGCCGGGGATCCCGAGAAGAGGTTCCCGTCTGTGGAGATGACCATTAGGTCTAAGTGGCAAGGAGCAGCCATTGACTGGAATGGAACCGTGCCTTTTTTCTGA

Function

GO: NA

KEGG:

id description
K22647 MINDY3_4; ubiquitin carboxyl-terminal hydrolase MINDY-3/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009400 True 1347 mRNA 0.54 11 37253939 37261404

Neighbor

gene id symbol gene type direction distance location
AMCG00009397 NA coding upstream 4245 37244233 ~ 37249694 (+)
AMCG00009403 NA coding upstream 19345 37217086 ~ 37234594 (+)
AMCG00009402 NA coding upstream 36964 37216031 ~ 37216975 (+)
AMCG00009399 NA coding upstream 47527 37192505 ~ 37206412 (+)
AMCG00009401 NA coding upstream 61442 37184624 ~ 37192497 (+)
AMCG00009395 siah2,LOC105023934,LOC106567892,LOC108431284,LOC106603586,LOC107587204,LOC107732330 coding downstream 1147 37262551 ~ 37266023 (+)
AMCG00009398 NA coding downstream 6960 37268364 ~ 37277885 (+)
AMCG00009410 NA coding downstream 37186 37298590 ~ 37302176 (+)
AMCG00009413 NA coding downstream 144444 37405848 ~ 37410371 (+)
AMCG00009414 commd2 coding downstream 152360 37413764 ~ 37417955 (+)
G56754 NA non-coding upstream 58851 37193726 ~ 37195088 (+)
G56747 NA non-coding upstream 65161 37188568 ~ 37188778 (+)
G56712 NA non-coding upstream 224397 37029206 ~ 37029542 (+)
G56694 NA non-coding upstream 278878 36900293 ~ 36975061 (+)
G56698 NA non-coding upstream 378541 36875078 ~ 36875398 (+)
G56775 NA non-coding downstream 24439 37285843 ~ 37291665 (+)
G56982 NA non-coding downstream 802386 38063790 ~ 38068153 (+)
G56995 NA non-coding downstream 868678 38130082 ~ 38133966 (+)
G57036 NA non-coding downstream 941390 38202794 ~ 38280479 (+)
G57161 NA non-coding downstream 1366515 38627919 ~ 38628135 (+)
G56536 LOC100846954 other upstream 1864612 35388914 ~ 35389327 (+)
AMCG00009345 NA other upstream 2884682 34363419 ~ 34369257 (+)
G56368 NA other upstream 3222494 34000796 ~ 34031445 (+)
G56369 NA other upstream 3235124 34015670 ~ 34018815 (+)
G56060 NA other upstream 5088574 32161760 ~ 32165365 (+)
AMCG00009404 NA other downstream 32499 37293903 ~ 37297009 (+)
AMCG00009405 pfn2,LOC105899220,LOC106598797,LOC105028925 other downstream 86704 37348108 ~ 37367671 (+)
AMCG00009415 wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084 other downstream 160613 37422017 ~ 37463505 (+)
AMCG00009429 NA other downstream 269418 37530822 ~ 37605124 (+)
AMCG00009428 NA other downstream 346901 37608305 ~ 37616696 (+)

Expression


Co-expression Network