AMCG00009403


Basic Information

Item Value
gene id AMCG00009403
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37217086 ~ 37234594 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009403
ATGCTTGCAGGCATGGATCCAAAGAGCTCTGCAAACATCAGCAGAAACACTACGGATTTCAACAGCGTTTTCACCAAGCAGGTGCTGCCCATCTTATACTGCGTGGTCTTCATTGGGGGGCTGGTTCTCAACAGCCTGGCTGCCTGCATCTTCTTCAAAATCCCAAACAACTGCAGCTTCGTCGTTTACCTCAAGAACATTGTAGTCGCCGACCTGCTGATGACCTTAACATTCCCCTTCAAGATCGCCAACGACTTTGGCTGGGGAGGCTGGTATATGAGGGTGGTGGTCTGCCGCTACACCGCTGTCCTTTTCTACTCCAGCATGTATGTGGGTATCGTCTTCCTGGGGCTCCTAAGCTTGGAGCGGTACTTCAAAGTTGTCCAGACATCCAGGGCTGCCGTCATGCAGAGTGTTGGCCTCTCCAAAGGGCTTTCCTTTTTAACATGGCTGCTGCTCTTGCTCTCTGTGCTGCCAAACTCAATTCTCAGCAGCAAGGAGGCGACCAAAGAAACTTCCAAGAGCTGTATTGGCCTCAAAACCAGTCTGGGAGTGCGCTGGCACAAGTTTTCAAACTACTGCTGTGTGGTTGTCTTCTGGTGCATTTTCCTGCTGATGGCATTCTGCTACGCCTCGATAGCCAAGAAGATCTATGACTCCTACAGGAATTTCAGGAGAGACTCGACAGAGACCAAAAGGACATCCAACCGGAACATTTTTAGCATCCTGTTGgtgttctttatttgttttgtgccgTACCATATCTGCAGGATCCCCTACACCTTAAGTCAGACTAGTAGTGCGTACAGTGTGCAGAGCAAGTTTTCATTGTTCCATTTGAAGGAAAGTACTCTGCTGCTGTCGGCTCTTAATGTCTGTCTTGATCCCATCATTTATTTCCTCATGTGCAGACTGTTCAGAGAAGCCCTGCTAAAAAGCTTTACAACGAAAGATGTGGAAGTAAGAAGAAAATCAATTTCTGCCGTTTACACTGCCAacaacACATCGGAAAATAACTCATGTGAGTATCCAATAGCTGCCCTACATACTGCTTTTACCGTTGTCTACTCTCTGGTCTTCAGTCTGGGACTTGTGCTCAATGCAGTCACCTTGTGGgtttatttctgtaataaacttaaCAGTTCCAGCGTCATGATCTACTTAAAAAACCTTGCCATTGCCGACTTTTTGCTGATACTTTCGCTGCTTCTGAAGATCATTAACTACTCCACAGATAACATGACCATCAGGAAGATCTACTGCACGATTGGAGCTACCCTTTTCTACCTGAACATGTACGCTAGCATCCTTTTTATGCAATATATCGGTGCAAACAGGTACCTGAAAATTGTGAGGGCGACGGAAAACCACACTTTTCACACCGTTAAGACTGCAAAATACATCTCCTATGGAACCTGGACTTTGGTTCTCCTTCTAGGCGGAGGATTCAATGCTCTCTCCATCAACATATGGTTGTCTCCGGTGAAAACTAAGATTTGTCATTCTTTATTACCCACGGCTGTAAAGACATTCTACTTTTCTGTGCACACTGTCTCCATCATCGTGTTCATTTTCGTGCTAGTGTCCCTCTCCTTTTTCTACTTTCAAACCacaaaaagactgaaaaaatcCAAGTATGCTTCCAACAAAGATCTACTGAAGTCAAAGAAGAATATGTGTGTTCTAATCACTGTGTTTTTCATCTGCTTTGTCCCATACTATCTTGTGAGGTTTCCTTACATCCTCACCACACTCGATGTTATTAGCAGCTGTGCATGGAAGAAGACTTTGTATTACCTTAAGGAATTCACAGTCTTGCTCTCCACCCTCAATGCATGCCTAGacccattcatttatttcattttttgcaaAGCATTTAGGGCCAAGTTAGACGCAACACTCAAGATGAATTCCACAGCAGGAGGGACCGAGTACTGCACAGTGAACGACCAAATGATCCCATTCACTTACTTATACTATATCATCTTCCTGACGGGAATCATCGGGAGCTGCGTGGCCCTGTGGGCATTTACGCgcaatcagaaaaacaaaaagtgcctTAACATCTATCTCATCAACCTGCTAACCTCCGACTTCATCTTGACGCTCGCACTGCCCTTTAAAATAGCCGTAGACTTGGGCATCGCTCCATGGAAGCTGAAGATCTTCCACTGCCAGTTCTCAGCCTGCCTCATCTACGTCAACCTGTACGCTTCCATCATATTCCTGGCCTTCGTGAGCACGGACCGCTACCTCGAGATCACACAGAGTTCCAAGCTCTTCCGGATACAGCACGTGGGCTTCGCCAAGATGATGTCAGTGGTGGTCTGGGGGCTGGTCCTGTTCATCATGGTACCCAACATGGCAATCCCTATCAAGGAGATCAAGGAGAAGCCCCTGGTCACCTGCGCTGAGTTCAAGCAAGAATTGGGCCTCCACTGGCACACCCTTACCATCTTCCTATGCCTGGCCATATTCATGAATGCCTCTGCCATCATCCTCATTTCCAATGGATTAATCCTGAGAAGGCTGTACAAGAACCGCAACAGCGACGATTCCAGAAACGTCAAGCAGGCTATGTTCAACATCGGGATGGTCACCCTGGCCTACGTAATTTGCTTCGTGCCCTACCATGCGGTGCGGATGCCGTACACCTTTGCCCAGACCCAAGTCATCACCGACTGTGCGCTGAAGCGTCACTTGTTTATCGCAAAGGAGTCCACCCTGCTTCTCTCAGTGCTCAACCTCTGCATTGACCCCATTCTCTACTACTATCTGTCGCACTCCTTCAGGCAGAAGATAACGGAGGCCTTCAAGCCAGAGAAAAAGGCATCTGTAAAGAGCACAACGATCACGACATTATGA

Function

GO: NA

KEGG:

id description
K08441 GPR171; G protein-coupled receptor 171

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009403 True 2865 mRNA 0.47 4 37217086 37234594

Neighbor

gene id symbol gene type direction distance location
AMCG00009402 NA coding upstream 111 37216031 ~ 37216975 (+)
AMCG00009399 NA coding upstream 10674 37192505 ~ 37206412 (+)
AMCG00009401 NA coding upstream 24589 37184624 ~ 37192497 (+)
AMCG00009396 NA coding upstream 72004 37133229 ~ 37145082 (+)
AMCG00009393 NA coding upstream 129493 37086517 ~ 37087593 (+)
AMCG00009397 NA coding downstream 9639 37244233 ~ 37249694 (+)
AMCG00009400 NA coding downstream 19345 37253939 ~ 37261404 (+)
AMCG00009395 siah2,LOC105023934,LOC106567892,LOC108431284,LOC106603586,LOC107587204,LOC107732330 coding downstream 27957 37262551 ~ 37266023 (+)
AMCG00009398 NA coding downstream 33770 37268364 ~ 37277885 (+)
AMCG00009410 NA coding downstream 63996 37298590 ~ 37302176 (+)
G56754 NA non-coding upstream 21998 37193726 ~ 37195088 (+)
G56747 NA non-coding upstream 28308 37188568 ~ 37188778 (+)
G56712 NA non-coding upstream 187544 37029206 ~ 37029542 (+)
G56694 NA non-coding upstream 242025 36900293 ~ 36975061 (+)
G56698 NA non-coding upstream 341688 36875078 ~ 36875398 (+)
G56775 NA non-coding downstream 51249 37285843 ~ 37291665 (+)
G56982 NA non-coding downstream 829196 38063790 ~ 38068153 (+)
G56995 NA non-coding downstream 895488 38130082 ~ 38133966 (+)
G57036 NA non-coding downstream 968200 38202794 ~ 38280479 (+)
G57161 NA non-coding downstream 1393325 38627919 ~ 38628135 (+)
G56536 LOC100846954 other upstream 1827759 35388914 ~ 35389327 (+)
AMCG00009345 NA other upstream 2847829 34363419 ~ 34369257 (+)
G56368 NA other upstream 3185641 34000796 ~ 34031445 (+)
G56369 NA other upstream 3198271 34015670 ~ 34018815 (+)
G56060 NA other upstream 5051721 32161760 ~ 32165365 (+)
AMCG00009404 NA other downstream 59309 37293903 ~ 37297009 (+)
AMCG00009405 pfn2,LOC105899220,LOC106598797,LOC105028925 other downstream 113514 37348108 ~ 37367671 (+)
AMCG00009415 wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084 other downstream 187423 37422017 ~ 37463505 (+)
AMCG00009429 NA other downstream 296228 37530822 ~ 37605124 (+)
AMCG00009428 NA other downstream 373711 37608305 ~ 37616696 (+)

Expression


Co-expression Network