AMCG00009406 (tsc22d2,LOC107097579,LOC107727513,LOC105899227)


Basic Information

Item Value
gene id AMCG00009406
gene name tsc22d2,LOC107097579,LOC107727513,LOC105899227
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37300528 ~ 37305420 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009406
CAGTGAGACCAGTAGCTTTCTTTGCACAGCCAGGCTTTTTCCTCCCTTTCTCCAAACCATTGGGAACTTTGTGGATCTGCACCATGCGCTCCAAGATGCCCTACCGCCTGCCCTGTTCGCCGGGCTCGTCCCCCCCGTACTCGCGGGGATTGATCGCCTATCGAGGGCGCTGCAGttcatcTGGAGCAAGTGTTGTAGCCATCGATAACAAAATTGAGCAAGCAATGgATCTAGTGAAAAGCCATCTAATGTACGCAGTGAGGGAGGAAGTGGAGGTGCTGAAAGAACAGATTAAAGAGCTGTACGAGAGGAACTCTGTCCTGGAACGAGAGAACGCACTGTTAAAATCCCTGGCTAACAATGATCAGTTGTCCCAGCTTTCTGTCCAGCTCACCAATCCCAGCAGCACTTCTCCCCAGCAGCCAACGCTCAGTGCCGCCCCCAGCGAGGGCAGCCAGCCCCCGTCTCTCCAACAGCAGCCCAACGTCTCTTCTGCGTGAAGCATCTGGTCTTCGTAGagaaaaacgaaacaaaaaaaaattataaaagaattagaaaaatacatagtcTTTATCTTGTTTGCCACCGGTGTTTTTACCAGTCTTCAAGTGAAGAGCCATGCttcagtgtgtgctgtttttttttggccttCCCAGTATTAGACAATCATCCTGCAAGAGCTTTCTTTAACTTGACATCTCATGCTAATCCGGCGGTGTCCAGGCTGTTCCGGCAGTGCACAGGGAGAACACTTGTGGGTTTGTGGTGGGCGGAAAAGGCAGTATCTAAACAAGGCCGAGTTGGGGTACATCTCGCCTTTCTCAGGCTTGTTAGCAGGGGGCGTTTTTGTGAACATAAGGGGGTCGATCAAGCCTTGCTGTTTCATGTTGTAAGAAGTGCGAGTCTGTTTTAAGAGCCACCATACTTCAACATGAGtcaaatttacataatgaaTTCAGTTTTACTGTTTGCGTTTATTTATTACAGGGCTGctattttcataaatgtaaatgaacaatGTCACAGAatcagttggaaaaaaaaacgaaatctaaaaaatatgaacgtttgaaatgtaaaataattggtTAATGAAATGGATGGGTGGTGTTGCATAAAACTAGTTAAATATAGGCAATAATTAAGACATTCTGGCATAGTGCTAACACTAATGGCAATTTTACTTTGGGattgtttatttacaatagTTAAGACCCAGTTTGAATGTAAATTTTGTATAGAGTGTAAAGTTTAAAGAGCATAGCAAGTTTGTACAGGTAAACACCAGTTCTTGTGAttataaaatctgaaatttaATCTTTGGTGGACTATTTTGATGAAGAAAACTGTTCCATGTGTGTTGCTAGTTTCTTTATCAAAGAACGGAAAGGTAATTGCCAtaaatccctttttttttttttttttttttctctcctttttaattttgtcctgcatttttttttttttttttttttttgggcggGGAAAAAAGCTGTGAAATTGTTCAACCTACTTTGTAACCAAAGATGCAAAGCTGtgtaattcaattttattttgtaatgcacactctatatgtatttttagttttgttactttttccttcacaacaaaaaaaatcttttgtTGCTGTTTAGCATGTTCTGCATGATCTGTAATCTTCAAACCACTTTCTTAcctcatgtttttattcagcaCTCTTATTGTAACATAAAGTAGTCTGTGAACAATGtcaatgaaaaaagaaaagagaaaaacagaacgAAGAGCTGGCGTTGATGGAGAAAAACCTAGTGTTGTACACACTAGTTAGAGAAATGAAGTGAGCCatcttttgttcatttaaatggTGTTTTGAATTTCATATGCAGAAAAAAGTTTTGTTACATTGcaaattttaatgtatttaataaatgcaacattCAGATTCCAAGTGTAGTGTACACTGAGtatttaaatgagaaacattgtacatttcaaaaatacGAATGGAAACCAGTAAATTCTGTATCAAGA

Function

symbol description
tsc22d2 Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Is expressed in paraxial mesoderm; presumptive segmental plate; and somite. Orthologous to human TSC22D2 (TSC22 domain family member 2).

NR:

description
PREDICTED: TSC22 domain family protein 3-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009406 True 2013 mRNA 0.39 3 37300528 37305420

Neighbor

gene id symbol gene type direction distance location
AMCG00009411 NA coding downstream 20776 37278886 ~ 37279752 (-)
AMCG00009407 NA coding downstream 22979 37275462 ~ 37277549 (-)
AMCG00009394 NA coding downstream 203201 37088783 ~ 37097327 (-)
AMCG00009390 mbnl1 coding downstream 379389 36900293 ~ 36921139 (-)
AMCG00009391 p2ry1 coding downstream 425799 36873672 ~ 36874729 (-)
AMCG00009412 LOC103360179 coding upstream 21335 37326755 ~ 37332027 (-)
AMCG00009416 rnf13,LOC106613488,LOC107551383 coding upstream 54665 37360085 ~ 37402881 (-)
AMCG00009422 NA coding upstream 220111 37525531 ~ 37528188 (-)
AMCG00009426 NA coding upstream 225303 37530723 ~ 37535894 (-)
AMCG00009423 NA coding upstream 232101 37537521 ~ 37543355 (-)
G56795 NA non-coding downstream 32697 37201032 ~ 37267831 (-)
G56742 NA non-coding downstream 132284 37167994 ~ 37168244 (-)
G56710 p2ry1 non-coding downstream 428705 36869548 ~ 36871823 (-)
G56612 NA non-coding downstream 907010 36096808 ~ 36393518 (-)
G56611 NA non-coding downstream 1195109 36080635 ~ 36105419 (-)
G56831 LOC106583953,LOC106560594 non-coding upstream 112994 37418414 ~ 37422521 (-)
G56861 NA non-coding upstream 210549 37515969 ~ 37517654 (-)
G56927 NA non-coding upstream 331285 37636705 ~ 37734188 (-)
G57013 NA non-coding upstream 813008 38118428 ~ 38118843 (-)
G57015 NA non-coding upstream 819729 38125149 ~ 38125363 (-)
AMCG00009409 selenot,LOC107681817,LOC106599070,LOC107708642 other downstream 15163 37280548 ~ 37285365 (-)
G56800 NA other downstream 80452 37215960 ~ 37220076 (-)
G56568 NA other downstream 1427931 35872123 ~ 35872597 (-)
G56546 LOC103376870 other downstream 1760718 35538887 ~ 35539810 (-)
AMCG00009347 gmps other downstream 2938187 34334261 ~ 34362341 (-)
AMCG00009417 NA other upstream 161834 37467254 ~ 37476035 (-)
AMCG00009437 NA other upstream 584082 37889502 ~ 37908968 (-)
G57155 dner other upstream 1274865 38580285 ~ 38582820 (-)
AMCG00009472 NA other upstream 1522545 38827965 ~ 38837594 (-)
AMCG00009521 gigyf2,LOC107728389 other upstream 2816043 40121463 ~ 40157471 (-)

Expression


Co-expression Network