AMCG00009409 (selenot,LOC107681817,LOC106599070,LOC107708642)


Basic Information

Item Value
gene id AMCG00009409
gene name selenot,LOC107681817,LOC106599070,LOC107708642
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37280548 ~ 37285365 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009409
ATGGAGAATCGGTCGCTGTCCTTTACTCTTCTGTTTCTGGGGTTTTTCTCCCTGTATTCCGCCTCGGGCGACAACCGGGTGTTTGAGGAGTACACGCGGGTCTTGAACCAGCGGTATCCGGACATCCGCATTGAGGGGGAGAACTACCTGCCTCTTCCCATTTACCGGCACATCGCCTCCTTCCTTTCCATCTTTAAGCTAGCTGTTATAGGATTGATCATACTAGGTAAAGACCCCTTTGCCATTTTTGGTATTCAAGCTCCGGGTCTGTGGCAGTGGGGGCAGGAGAATAAGATCTATGCTTGTATGATGGTTTTCTTCCTTAGCAACATGATTGAGAACCAGTGCATGTCCACCGGTGCGTTTGAAATCACATTAAATGATGTCCCAGTGTGGTCTAAACTGGAGTCGGGTCACCTCCCATCGATGCAGCAACTCGTCCAGATcctggaaaatgaaatgaagcTCAATGCTCGCATGGACTCGCTCCCACACCATCGGTCGTAACCTCGCCTTCACACGCCGGAGTTCCCTCCCGTTTGAGTCGGAAGCTCTCCCATGGCAGTGACCTGATACCTATGAAGGCCTGCACTGAAAGCAGAAGTCTGCTAGTGTGGGCTGGATGCCTCTTCAGTCTTGCTGACCTCTGGAGGAGTTTGCTTCAAGCAGGAGGGACCTTTTGCATGGGGGGTGGATGTTCATTTCTACTGCAGCACATTCATTATggtgcaataaaatgtatagtttcacCTTTTTATTCATCATTTGAGCCCTTGTATAGCTACATGTCGATGTCcagttgtattttgtattaacaactcAAAACAAAGGTCAGGCAAAAcctataaattaaattaattttgtttctgttcggttgtaattttttatatttctttttatagCATAAACTGgaagtaaaattatattaaagtgGATAACATctaacagaaagaaaaaaagaaacttttGTTTGTCTCATCTCTGTCTGGTGGTGGTTGGCATTCACTTCACCAAAACCTTTTTAAAGAAACTTCTGCTTTTGATTCAACATCTGTATTTATCCTTTAAGGCAGTGGCTCCTAACCCCGATCCCTCTCTGCTGGGTTTTATTCCAGCTCAGTTGGTGGCACTTACTGACCTGAATGTTCTCCACCCGTTTTAAGAGCTGGAAAACACTCCCGAGGTTGGAATAATTGGTGGACCATCATTAGTTTTAAGAGtgcagttggaacaaaaaaaaaaaaacagccgtCACGAGTCCTGCGGGCCCAGGGATGTGAAGCGCTGCTTTAAGGGAATGCTTTTGGCAGACCTCCTTTCTCATCCTCCACATTGGTGCTGTGCAGAAGCCTACGTTGAGAAACAGTGTGAGGAAATTAAATGTCTGCTTCAGGAAGCAAGCAGAGAGGCACAGATGAATAATGGGGAGTAAAGAGTCTGTTGTTGGCTTcgcttgctttgttttttcttttcatatacaTCCTCTACATACCACCTGTTTGatttctcagattctgttttCTTATCAGTGTCAAATCAATGGAGGCAGCTGGCCCATTGTACAGAACATGGCTGATGGACGGCAGGGCTGTTCTGTCCGTGTACACAGCAGGCTGAAAT
>TU71004
CTCCTAACCCCGATCCCTCTCTGCTGGGTTTTATTCCAGCTCAGTTGGTGGCACTTACTGACCTGAATGTTCTCCACCCGTTTTAAGAGCTGGAAAACACTCCCGAGGTTGGAATAATTGGTGGACCATCATTAGTTTTAAGAGtgcagttggaacaaaaaaaaaaaaacagccgtCACGAGTCCTGCGGGCCCAGGGATGTGAAGCGCTGCTTTAAGGGAATGCTTTTGGCAGACCTCCTTTCTCATCCTCCACATTGGTGCTGTGCAGAAGCCTACGTTGAGAAACAGTGTGAGGAAATTAAATGTCTGCTTCAGGAAGCAAGCAGAGAGGCACAGATGAATAATGG
>TU71005
tctcccctcctccagctcctctcGTGTGTGTTTCGTTGACCCGGGAAGAAAACGGAGCGGAATGGAGAATCGGTCGCTGTCCTTTACTCTTCTGTTTCTGGGGTTTTTCTCCCTGTATTCCGCCTCGGGCGACAACGTCGGAGGgaagaaattgaaaatgcagtttGCGACGGGACCACTGCTCAAATTCCAGATCTGcGTCTCCTGAGGATACAAGCGGGTGTTTGAGGAGTACACGCGGGTCTTGAACCAGCGGTATCCGGACATCCGCATTGAGGGGGAGAACTACCTGCCTCTTCCCATTTACCGGCACATCGCCTCCTTCCTTTCCATCTTTAAGCTAGCTGTTATAGGATTGATCATACTAGGTAAAGACCCCTTTGCCATTTTTGGTATTCAAGCTCCGGGTCTGTGGCAGTGGGGGCAGGAGAATAAGATCTATGCTTGTATGATGGTTTTCTTCCTTAGCAACATGATTGAGAACCAGTGCATGTCCACCGGTGCGTTTGAAATCACATTAAATGATGTCCCAGTGTGGTCTAAACTGGAGTCGGGTCACCTCCCATCGATGCAGCAACTCGTCCAGATcctggaaaatgaaatgaagcTCAATGCTCGCATGGACTCGCTCCCACACCATCGGTCGTAACCTCGCCTTCACACGCCGGAGTTCCCTCCCGTTTGAGTCGGAAGCTCTCCCATGGCAGTGACCTGATACCTATGAAGGCCTGCACTGAAAGCAGAAGTCTGCTAGTGTGGGCTGGATGCCTCTTCAGTCTTGCTGACCTCTGGAGGAGTTTGCTTCAAGCAGGAGGGACCTTTTGCATGGGGGGTGGATGTTCATTTCTACTGCAGCACATTCATTATggtgcaataaaatgtatagtttcacCTTTTTATTCATCATTTGAGCCCTTGTATAGCTACATGTCGATGTCcagttgtattttgtattaacaactcAAAACAAAGGTCAGGCAAAAcctataaattaaattaattttgtttctgttcggttgtaattttttatatttctttttatagCATAAACTGgaagtaaaattatattaaagtgGATAACATctaacagaa

Function

symbol description
selenot Predicted to enable thioredoxin-disulfide reductase activity. Involved in cell redox homeostasis. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane.

NR:

description
PREDICTED: selenoprotein T1a-like

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0008430 selenium binding molecular_function

KEGG:

id description
K22366 SELENOT; thioredoxin reductase-like selenoprotein T

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009409 True 1620 mRNA 0.45 6 37280548 37285304
TU71004 False 349 lncRNA 0.48 1 37280743 37281091
TU71005 False 1092 lncRNA 0.47 6 37281218 37285365

Neighbor

gene id symbol gene type direction distance location
AMCG00009411 NA coding downstream 796 37278886 ~ 37279752 (-)
AMCG00009407 NA coding downstream 2999 37275462 ~ 37277549 (-)
AMCG00009394 NA coding downstream 183221 37088783 ~ 37097327 (-)
AMCG00009390 mbnl1 coding downstream 359409 36900293 ~ 36921139 (-)
AMCG00009391 p2ry1 coding downstream 405819 36873672 ~ 36874729 (-)
AMCG00009406 tsc22d2,LOC107097579,LOC107727513,LOC105899227 coding upstream 15163 37300528 ~ 37305420 (-)
AMCG00009412 LOC103360179 coding upstream 41390 37326755 ~ 37332027 (-)
AMCG00009416 rnf13,LOC106613488,LOC107551383 coding upstream 74720 37360085 ~ 37402881 (-)
AMCG00009422 NA coding upstream 240166 37525531 ~ 37528188 (-)
AMCG00009426 NA coding upstream 245358 37530723 ~ 37535894 (-)
G56795 NA non-coding downstream 12717 37201032 ~ 37267831 (-)
G56742 NA non-coding downstream 112304 37167994 ~ 37168244 (-)
G56710 p2ry1 non-coding downstream 408725 36869548 ~ 36871823 (-)
G56612 NA non-coding downstream 887030 36096808 ~ 36393518 (-)
G56611 NA non-coding downstream 1175129 36080635 ~ 36105419 (-)
G56818 tsc22d2,LOC105899227 non-coding upstream 15179 37300544 ~ 37367669 (-)
G56831 LOC106583953,LOC106560594 non-coding upstream 133049 37418414 ~ 37422521 (-)
G56861 NA non-coding upstream 230604 37515969 ~ 37517654 (-)
G56927 NA non-coding upstream 351340 37636705 ~ 37734188 (-)
G57013 NA non-coding upstream 833063 38118428 ~ 38118843 (-)
G56800 NA other downstream 60472 37215960 ~ 37220076 (-)
G56568 NA other downstream 1407951 35872123 ~ 35872597 (-)
G56546 LOC103376870 other downstream 1740738 35538887 ~ 35539810 (-)
AMCG00009347 gmps other downstream 2918207 34334261 ~ 34362341 (-)
G56438 kcnab1a,kcnab1,LOC107671078,LOC107675612,LOC107566585,LOC108263953 other downstream 2964540 34239484 ~ 34316008 (-)
AMCG00009408 NA other upstream 211 37285576 ~ 37394988 (-)
AMCG00009417 NA other upstream 181889 37467254 ~ 37476035 (-)
AMCG00009437 NA other upstream 604137 37889502 ~ 37908968 (-)
G57155 dner other upstream 1294920 38580285 ~ 38582820 (-)
AMCG00009472 NA other upstream 1542600 38827965 ~ 38837594 (-)

Expression


Co-expression Network