AMCG00009412 (LOC103360179)


Basic Information

Item Value
gene id AMCG00009412
gene name LOC103360179
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37326755 ~ 37332027 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009412
ATGTCGAAAATGCCGGCgaaaaagaaaagctgcttCCAGATCACCAGTGTGACACAGGCGCAGGTTGCGGCCAGCAGCATCACGGACGACACGGAGAGCTTGGACGACCCGGACGAATCCCGGACCGAAGACGTGTCATCGGAAATATTCGACGTGTCCCGGGCCACGGATTTTGAACCGGAGGGAGTGTGCGATAGGAGTTCGTCCGAAGAGACTCTGAACAACGTCGGCGAGACGGAAGCCTCCGCAGTGGTGGCACCTCATATACCTCAAGATGGGCAGCTACTGGCAGGGTCGGGGTCTCCCAATGGGGGGCACCCTTTGAGAAGCACAGTCTTGGCAGGCGTCGTTCATGGCAATCCGCAAGTTTTGGGAACAGGATTAGCGGCGGCAACTGCAGCGGCCCAGCCCCCTCCCGCCGCGGCTGGAAACGTGCAGCAGCAAACAGGACCCGCCGGCGCCGGAGGGGCGGTAAATGCGGCCTCGGTCACCTCTCAGCCTGCTCCTGCCGCCGTCGCCGCAAgtacaactactactacaactacaactTGCAGTTCACGTTTCAGGGTCATCAAACTTGATCACGGTACAGGAGAGCCCTTCAGGAGGGGGAGGTGGACTTGCATGGAGTTCTATGAGAGAGATTCTGAAGGCTCCATTATTACCAGGACTGTGGATAGCATTAAGCACCCTACCTTGGATCACAACACAGACAGGGACAGCGGGCTGGGAGCCACTGGGGGCTCTGTAGTGGCCCCCACAGCTCACTCTGTGCTGGGTTTGGACTCCATGGCCGACGGCTCCTTTGCTCCTCACCCTCAACAGACGGATCCGCAGAGTTACAACATGGGGCACCAGACTTTCCAGCCCCCTGGGTATTCCCCTCAAGTGATGGCAGGGCCTGCACAGCAGGTAGCGCAGGGGGGCATGCAGCCTACTGCCCCCCAGAACATCCTGCCCCACGGGCACAATGGCCTGAGTATGCCGTCACTTCAGACCATGCCCTTGCAGCAGGTGCAGAAGTCACCCAGCCTGGCCCCCCAAGTCACCCAGCCTCCGCAGTTTGCCTACACAACCCAGGCCCACCAGCTCGGCCCCAGCCATCACTTGTCCAGTCAAGGCTCTCTGGTACCCGGCACCCAAGGGGATTACCGACAGCAGCAGCACCTACCTGTCATACACCCCCAGCCTGGCGGATTGCCGGGGGCTACAACACAGGGCCTCCCCGTGGCCAGTCTTCCCGTGGCCCAGCCTCTCAGTCAGGGCCCTTCGCCTGTCATGACTCCTGCTGCCAGCGGCGTGGCTCCAGTGTTGGGGCTTCAGGGCCAGTCTGCTGACTCGGCTGGGCAGGGTGCTGTAGGATTGCCGGGTGGCCAGACGTCACTGCAACAGTCTTGTACTGGAGGAGGAGGTGCAGCACAGCAAGGTGTGGGTTCAGTGCCTGGAGTGGCGCAGCCTttaggggtggggggaggaggaggtcCAGTGTCGGGGGGACCAAGCAGCCCTCACACAGTGGCCCCCGGCGTCCAGAACATGCCTGCTGTCGTGTCCAGTACTGGCATCACGAGCGGGTCGACCAGTGTGCCTACCGCAGTGCCCAGCACATCCAGCACTCCCATCTCCATGCCAAATGCCCTGTCGGCAATCGGACAGTCGCAGGTGCCCCAAGGCACCAACATAGGGGCGCAGACCGGGGGGTTGGTGATGCAGGGGGGTGCCGCCCCCCCTCCCACCTTCAATCAGTTCCCAGCCCAGGCCACCATCAGCCAGGTGGATGAGAACCGAAGGAAGTCAGATGCCCTACCTCAGCCCCCAGCCACGTCGGGAAAAGACCTGATGAAGCCTTTGATTCCAGAGCCCCTGCAGCTGTCTGCAGCCACCCCCATGAACAGCTTGACCACCACAATGTTCGGCATTCCCATTCCCTTGGACGGCGATGAGGACAGGTGTACCGAGCTGCTGAAGGAGTTCCCGAAGAACATTCCAAGCTGGCAGAAGCTCATGTGTTTTCAGATCTTGTCGGTGTAG

Function

NR:

description
PREDICTED: TSC22 domain family protein 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009412 True 2031 mRNA 0.61 2 37326755 37332027

Neighbor

gene id symbol gene type direction distance location
AMCG00009406 tsc22d2,LOC107097579,LOC107727513,LOC105899227 coding downstream 21335 37300528 ~ 37305420 (-)
AMCG00009411 NA coding downstream 47003 37278886 ~ 37279752 (-)
AMCG00009407 NA coding downstream 49206 37275462 ~ 37277549 (-)
AMCG00009394 NA coding downstream 229428 37088783 ~ 37097327 (-)
AMCG00009390 mbnl1 coding downstream 405616 36900293 ~ 36921139 (-)
AMCG00009416 rnf13,LOC106613488,LOC107551383 coding upstream 28058 37360085 ~ 37402881 (-)
AMCG00009422 NA coding upstream 193504 37525531 ~ 37528188 (-)
AMCG00009426 NA coding upstream 198696 37530723 ~ 37535894 (-)
AMCG00009423 NA coding upstream 205494 37537521 ~ 37543355 (-)
AMCG00009425 NA coding upstream 212212 37544239 ~ 37550476 (-)
G56795 NA non-coding downstream 58924 37201032 ~ 37267831 (-)
G56742 NA non-coding downstream 158511 37167994 ~ 37168244 (-)
G56710 p2ry1 non-coding downstream 454932 36869548 ~ 36871823 (-)
G56612 NA non-coding downstream 933237 36096808 ~ 36393518 (-)
G56611 NA non-coding downstream 1221336 36080635 ~ 36105419 (-)
G56831 LOC106583953,LOC106560594 non-coding upstream 86387 37418414 ~ 37422521 (-)
G56861 NA non-coding upstream 183942 37515969 ~ 37517654 (-)
G56927 NA non-coding upstream 304678 37636705 ~ 37734188 (-)
G57013 NA non-coding upstream 786401 38118428 ~ 38118843 (-)
G57015 NA non-coding upstream 793122 38125149 ~ 38125363 (-)
AMCG00009409 selenot,LOC107681817,LOC106599070,LOC107708642 other downstream 41390 37280548 ~ 37285365 (-)
G56800 NA other downstream 106679 37215960 ~ 37220076 (-)
G56568 NA other downstream 1454158 35872123 ~ 35872597 (-)
G56546 LOC103376870 other downstream 1786945 35538887 ~ 35539810 (-)
AMCG00009347 gmps other downstream 2964414 34334261 ~ 34362341 (-)
AMCG00009417 NA other upstream 135227 37467254 ~ 37476035 (-)
AMCG00009437 NA other upstream 557475 37889502 ~ 37908968 (-)
G57155 dner other upstream 1248258 38580285 ~ 38582820 (-)
AMCG00009472 NA other upstream 1495938 38827965 ~ 38837594 (-)
AMCG00009521 gigyf2,LOC107728389 other upstream 2789436 40121463 ~ 40157471 (-)

Expression


Co-expression Network