AMCG00009416 (rnf13,LOC106613488,LOC107551383)


Basic Information

Item Value
gene id AMCG00009416
gene name rnf13,LOC106613488,LOC107551383
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37360085 ~ 37402881 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009416
TGACATTCTGCCGTACTGGCCGCTGTGTGCTGCGATGGAGTGAACTGGTAGTCAAACACTTTGAGTCAgtgtacattaatacaaaaatcactGTAATGCCTTTATTAGCCGTCCCTTTTCTTATCAAAGGAACAAATCTGTCCGTTATACAGGTGCTGCCCTCGTAATGAAAGATGCTGCTGTCCCTGGGGATGCTGATGCTGTCCGCCACCCAGATCTACACCATCTTCACAGTTCAGCTGTTCGCCTTCCTGAACCTGCTCCCGGTGGAGGCCGACATCTCAGCGtattcTTTTGACAACAAGACCCAAAACTTTGATGACCTGCCGGCGAGGTTCGGCTACAGACTCCCCAGTGAGGGGTTAAAGGGTTTCCTCATAGGCGCCAGACCGGAGAATGCCTGCGAGCCCATCGAGCCACCGCCACTCCGGGACAACCTGACCGGCACCTTCATCGTGCTGATCAAGCGCTTCGATTGCAACTTCGATGTGAAGGTTCTTAATGCCCAGAAAGCCGGATACAAGGCGGCGATTGTTCACAATGTGGACTCTGATGACTTAATCAGCATGGGATCCAATGACCTGGATGTTTTAAAGCAGATCGACATTCCTTCAGTCTTCGTGGGCGAGGAGACGGCCAACTCTCTCAAGGAGGAGTACACGTATGAGAGAGGTGGCCATGTGGTCTTGATGCCGGACTTCAGCCTGCCCCTGGAATACTACCTGATTCCCTTCCTCATCATCGTGGGCATCTGTCTTATACTCATCGTCGTCTTCATGATCACGAAGTTCGTGCAGGACAGGCACAGGGCTAGGAGGAGCCGCCTGCGCAAAGACCAGCTGAAGAAACTGCCCATTCACAAGTACAAGAAAGGGGATGTCTACGATGTGTGTGCCATCTGTCTGGACGAGTACGAGGAGGCCGATAAACTGCGAGTGCTGCCTTGCTCTCATGCTTACCACTGCAAGTGCGTGGACCCCTGGCTGACAAAGACCAAGAAGACGTGCCCGGTCTGCAAGCAGAAGGTGGTCCCGTCGCAGGGGGACTCGGACTCCGACTCGGAGGACAGCGGACCCGAGGAGAACGACGCCGTGTCCGAGATCACGCCCCTGCTGCGCTCCACGGCCTCGTCCAGCGCCCACTCCTTCGGGACCATGTCGGGCGCGCAGTCCCCCCACGGCCAGGACTCCTCGGAGTACGAGGACGACGACGACGATGACATCGACAGCACCGGCTCGTCGGGGGgcggggaagaggaggaggagagcatgAACATGAACGTGGAGACGGTGGTGGTGGTGCAGCTGCAGCCCGGACACCTGGACTGCGACGACGGGGATGGAGACGAGCACGCCTATGCCTGAGACCCCCCGCCCTTCTCAAAAAGCAGAGTGAGTGCATCGGACAGCTGCACGGGAATGGGATGcatttttgattattattttttgagggggggggggttaaatgCACATCACTGCACTGTACATAACTTCTTATAAATGTCACGACTTGCTTAGTTAATCGAAGAGAAAAATCCCTTGCATCAGGGTATTTAGAGGTGTTCCCAAAGCAGtttcttttgatattttgtGGGCGTGTGCTGTAGCAAAGAGATGACCACGTGAGGACCCTCCGGAGTCCGCACCCCGTGTCACGCTCTGAGAACGTACTCCGGTTAGCAGAGATCAGGGCTGGATGCTCAAGGAGGTATTGAGTTGGAGAGCACTGTATTCACTGTGAAAACTGAGGGCCGGGCAGCAGAgaagtgaacagcagcacacGGACACAGAGGGAACACCCCCGCTACATAACAGAACATTGCACACTTGCCAGAAATTGTGCAGATGCAACTTAAACGTGTACATATgatgtataaaacattataaataacaaaatccttaaaaaaaagtattcttcTAGCCTACATATCTGTCGGCCTCTGTATCAGAAGGTCACGATGCTTTAGAAATTCTGCAATCTCTAGCGTAACATGTATATAATCTGCTGCATATAGTAGTCTTAATCAAATACTATGcagttatattttttttgtaagtagAGAGACTTCACACGACTCATTTTTTCATACTAAATGTTAAGTGTAAATACACAAACCATATACAGTCTGACTGTGTGTATGAGCTCATACTTGAGAGTTTATGTCCTGAGCTTCACACTTCAGGGTCTTGACGATTTTCTTGGCAGTTTTTCAAAATCTAGCCAAAAGATTGAgaacttaaataaaacataaacagtAATGGTCCTAAGGAGCATCctatggggggaggggggtatttGGTCCTCTTAAGGGTTTTCACAAAGTCTTAAATGTAAACCATAAACAGAGGGGTGAGCGGGAACGAGAATTACACCAAGCCAGGCTCCCCAGTGGTTAAAGAAGTAGCcggtttctgttttgtaaaggtcagtctcctgttttctgattCTTAAGAATTGAAATTCGTGAGAAACACTCCGACTCACAATCCTGTTTTCAAAGCCCAACCGTGCACAGATTGCGTAGAACTAGTTCATgttcagaaacacatttttgaattaattactttgtgtttttttttttaactagacTTGCACGTCTTGTATTTCTGTCCCTTTGAAGCCAAGCATATGTAACCTGTCTACTTCCTATTTGCCATTCACCCCCATCtgtattcaaattaaagttattttaaaacccATCAACTACAATGTTTACGAGTTTCCGGCTACTTATTTGAAGGACTTTCCAACATTATAATCAAATGAATGTGGGGGCAGGGGGTGTCGGGACAGCTGTTTTGAGATTACACtcgtttttaaaaaacaaacattcgaacaaatgatgtgtgtgtgaccattactttttattttcaatcagGAACTGGTCTGAGCCGGCACATCTGTTTGTAATCCCAGCCTGCCTCAACAATTACCATTAAAACTGACCAATGTTTTCTCCAATGAAGATCTTTTTCCACCCAGCAGTACTGTGGAAGTTCATCTGGACACTGAAGGCAGTAAAGTACTTGTTCAGTCTTGGCTGGACTGGAATCACAGGTCCAGTTGCGCTGGGGTGCTTCATTTATATACTATTTATTCACACTTCCaacagtgggaaaaaaaaaacttgacacAGTAACCCACTTACAATATCACGTGATGTAACGGGAGATAATTTCAAATAGCATCGTCTGTGGCTTCAATTTCATGAACAGTGGTCtctaaatgcattataaaactttattttaataaaatgttaatctgAACATTGTCCCACACTAAATAATCGTGTTTCTCCCATACTCCTTAGATTTGAGTAATACTGTCCTGCACCAGTTATGTAACGCCCCAACTAGAGAAGAAAAGGGTTGCAGTACTACTACAATCTTTTCAATGAGTTTTGATGAGATACTCTAGCAGCAGGTGTATACATCGGAGGTCTGGACGGGGGAGTGTGAAAGACCAGAAAATGATTGGGTGGGGTCTCTTAAATGGTACAGGGGCGGTCTGTGCAGCAGGACAGATTCCAGAGGCCACTCATGAGCAGTTGACACCATCACAAGGTTCTTAactggcttgtactttaacaATGAGGTGGACAGATCAGTCAGCCTAAGGTACTGATACACAGCCCTCCAGGCTACGTCATTTGAATGGGAAGGTCCCATGGGGCTGAAACCAAAGCCTTTCCCCTCCTGTCCATGCTGTCACTGGGATGGTGGTGGTGGACCCACCCTCCACAGACAGACTGCTGTCCACAGTATATAAGCAGGTACCTACCATCACAGGCTCTTACCACATCTACAGACAGAACCGAGGGTAAACAGAAGGGTCGCCTCTAAGGAGCTGGTGGCCATTTAGAAGTGAGAAAACTTAACCAAATCATGACACTTTTTCCAGTGTTACTGACGGGGGGGGAAACTCCCAATTTGGTCTCCAAGAGCTtgaaaagtgtaattttaaGGCTGACCCACTATCTGGGGTTAACACAGCAGTCATTTTAGCCCCCCTGTTTAAAAGTGCCACAGTTTCAAATTCAATCCTCATCCTTAACTCAAACTGGGCTTCTGCAGAGAACAGCTGCTTGTGCGATTTACAGATCGGTTAAATGAAACGTTTGTGAACTGCGGCTTTTCCTTGAATCACCACCCCTCAATCCAGTAGCGCGCTAGATCTCCGAGAGGACGGGCCGAATGGGAACGTGCTCCAGCCCCGCGGCGGTGCCCAAACAGAGGCACTGGGAGCAGATCAAGGAATGGAGAGAATGTCTGAAGCACGTCACTAGACTTGCTTTCCTGCATTCTTTCGGCCACCACTACACTATTAAAATCCCCGGGTGTTCTGATCCAGGGTGCGAGTCCTGTCCGAGCAAACACCCCTGGATTTAATCAAATTTACCTCTGTGTATTTACAATTCCACAGGAAAACATTCAGGAAAGCAAAAACCAAGAACACACCTTCGATTGATCTGGTTGGAATAAATTTATTGATCTGTCTGTAAACAAGGTGGTTTATCAAtttatggcatttttttttttaatgcatattaaatCAGATGAGTTAGACTGTATCCCagatgcaagaaagaaaaaagtgcagGGAAAGAAATGAACATAAAAATCAGCAACAAGGTTTGTTTAATCTGTACAAATTCCACAAGGCCTGAACATTTTGAGTTTGCACTAAAATATCCCTAAGGAAGTGCCATTCAAATTACTCCTTTCTGGGCAGCCAACATCATCCATCTCACAATAGCAACAGATCATCTCTTACATTATGGCACAGGATACATAGATTTTGTATTAAGTTTTCCACAAGACAACCAAGTTTTCTTATTCCAACCAATACCATCtcccatttattttgtgtttacagaGTTACTTTTcagggtcttttttttttttgtttgtttttttgtgtttttttattttttatttaattttttaaactttttaaattggaCATAACATTTAGTACCGTGCTTTGACAGACAGTTTCTGATACCACATCTTAAGATGATAGCTAGAGCACAAGGCAATTtattccacagttttgttgtttttttgtgttttttttttcctttttccccacAGCATGGATTTACAGGGTCAAAtgcaataattcattttaaaaaacattgcaacAAAACAGTTGTCAAATGAGGAGACTGCCATTTCCAACCCTGGTACTGGTACTGTACCCTGGTACAGAATCACCATCACCGGGAGCGAGTATTAAAAGTTAGTGTTTTGCATTCAGTGTAGAGTTGAAGCTAGCAGTCATCCTTTACAATGCTTTAGAGCAATTTTGTAAAATCCCAAGCTGCGACTAATATTGGTCCtatgaaaaaaattgaaactgGACAAACTCCAGATGGTTATGTTGGGATATCTACTGTCCAAAATggcagcctttaaaaaaaaaaaaaaaagtatatatattacaggAGCTGGCAAACAAAACTTAAGTGCCCGAGCTATTGTAATGATGGAATGTCCATGGAGATTATACAGTCAGGGATGTGATGAAAAGGTCATGGGAGGAAACTTCCACCTGCATCTTGACAATGCAGATTTGCCATTACACTCAAAATAATCCAACACTACCAATTACTTGTAAGACCATGTCTAAGTACAACAGCAAAGGCATGTGACGCAAGGTACTGCAACTCTAAAACCGATGTCAGTTGCAAGGGTCAAAGGAAAAGATAGGTATAGTGTTTGATAATGGAGCACAGCATGCCTCTGTATGACGAAGGTGCTGGTGGAGTGTCACCTACAAGGAACAAACAGTGAGGGGGCCGGGGGCGAGGAGGCGTTTTGGCGGGAGTGGCGAGGGGAGGGCAGGGCAGGTGGGAGAGAAGTCAAaggagctaaaaaaaaaaaaaaaaaaagatatgcatGCAGTGTTCCCTCCAAGACATGCTTTAGAAAAGGAAGACGATATGAGCTTACTAACTGGCTCAAAGTGCTCAGAAGGCATTGATCAATCCAAGATTGCACTACTGGCACCTTCGTGTGAAATATCAGGGATGATCAATTTAGTCCTTAGCTTGTCCTTCATTTTTTACCAACAGTTCTGTTAAAGATTGAATCAatccattattttattccttcattttCCTTGTTGTACGTTTGCTcgttttgtgtggttttttttgTCGCAGTAGTAACATGCTTCATTATTAACTATGGTGCAACAGTAGTGCCAGAATGGGATTGGGTATACAGTGTTAATGCATATAAATGaagggagaagggggggggggggcaaggaTATTCAATAAAAGGGGGGGTacaaaaagtcaaaataaaaatggaggaaaacaaaggaagaaaagcAACTACAGCCTGGTTGAACTGCCAATGCAACAGGGTGATTATGAGCTGCTAGGTGAATGGGGACTGGCTGCTTAATATCCAGATTTCCTCAGGTACTCAGCCATGGAATAGGCTTTCTTGTTGAGCTGACCTCCATGGATACCTTCCTTTCCCATGACTAAAACCAATGCTGGAGCACAcaaggaaacaagaaaaaaaatgaacaaaattaagaaaagaaaaaaaaaaaacctttcccCACTAACATAGGGATACAAAAGAGACATAGGTTCTTACCCCAGTACCCTGTATTGCTATTAATTTTTCCAAAGACATTAATGTGACTGCTCGAGGGGGAAATCTTAATagcaatgttttttaatactctttttttgtttgtcatttttgtcctttttttatttttttttatttattttttattattttttgttcaatttgACTACTTAAGAACCAGCCTGACTGTACACTAGAACCCCGAATCCCTCAAGTATTTTGCCATTGAGTATGCCTTCTTATTCAATCCTCCACCGTGGACCCCTTCTTTTCCCATTACAAGAACCAAGACTTTGCTGGCTCTTCCTACAGAAACGTTGTATGTTGGCTCGCCTCCTTGACTCTTTGTTCTGATGTCCATAGTCCAGTCACCCTCCACCTGCAGGCTGTCCCTGATCACCGAGCACTTCTTTTGACCTAAGGTCAGACCACTGGTGAAGAAACCCTCCCGGTCCTTTCCTACTAACACATCGATTTCGTgaggCGTCATATTGTTAAAAGTGCCCCCAGCCGTCGCTGCCCACACGTATTTGGCGTCCGTGTAGCCGACAATGGCGGAGTCCTGGCAGCTGCCATCGGCCATCAGACTATCCACGTAGCTCTGCCAGGACATCTTGCGtcttttgttaaaatacacaggctgcttaaaaaaaaaatctggaaatgGTGCAGAGGTTCGGTAGTGTTAAGGTTGATGCAGTgttactatattatttttaggaaAGTTGTAGTGTCTCCAACTAGCACCCACGGCTCCGCGCTCCGTTACGTCCCCGCTTTAATCTGAGCCTGGACAGCAAAGACGAGCGGAGGAAACCGGGCAGCGCCTGGGTGTAGT

Function

symbol description
rnf13 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 73. Orthologous to human RNF13 (ring finger protein 13).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF13

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15692 RNF13, RZF; E3 ubiquitin-protein ligase RNF13

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009416 True 7452 mRNA 0.44 12 37360085 37402881
Loading

Neighbor

gene id symbol gene type direction distance location
AMCG00009412 LOC103360179 coding downstream 28058 37326755 ~ 37332027 (-)
AMCG00009406 tsc22d2,LOC107097579,LOC107727513,LOC105899227 coding downstream 54665 37300528 ~ 37305420 (-)
AMCG00009411 NA coding downstream 80333 37278886 ~ 37279752 (-)
AMCG00009407 NA coding downstream 82536 37275462 ~ 37277549 (-)
AMCG00009394 NA coding downstream 262758 37088783 ~ 37097327 (-)
AMCG00009422 NA coding upstream 122650 37525531 ~ 37528188 (-)
AMCG00009426 NA coding upstream 127842 37530723 ~ 37535894 (-)
AMCG00009423 NA coding upstream 134640 37537521 ~ 37543355 (-)
AMCG00009425 NA coding upstream 141358 37544239 ~ 37550476 (-)
AMCG00009424 NA coding upstream 151932 37554813 ~ 37559533 (-)
G56795 NA non-coding downstream 92254 37201032 ~ 37267831 (-)
G56742 NA non-coding downstream 191841 37167994 ~ 37168244 (-)
G56710 p2ry1 non-coding downstream 488262 36869548 ~ 36871823 (-)
G56612 NA non-coding downstream 966567 36096808 ~ 36393518 (-)
G56611 NA non-coding downstream 1254666 36080635 ~ 36105419 (-)
G56831 LOC106583953,LOC106560594 non-coding upstream 15533 37418414 ~ 37422521 (-)
G56861 NA non-coding upstream 113088 37515969 ~ 37517654 (-)
G56927 NA non-coding upstream 233824 37636705 ~ 37734188 (-)
G57013 NA non-coding upstream 715547 38118428 ~ 38118843 (-)
G57015 NA non-coding upstream 722268 38125149 ~ 38125363 (-)
AMCG00009409 selenot,LOC107681817,LOC106599070,LOC107708642 other downstream 74720 37280548 ~ 37285365 (-)
G56800 NA other downstream 140009 37215960 ~ 37220076 (-)
G56568 NA other downstream 1487488 35872123 ~ 35872597 (-)
G56546 LOC103376870 other downstream 1820275 35538887 ~ 35539810 (-)
AMCG00009347 gmps other downstream 2997744 34334261 ~ 34362341 (-)
AMCG00009417 NA other upstream 64373 37467254 ~ 37476035 (-)
AMCG00009437 NA other upstream 486621 37889502 ~ 37908968 (-)
G57155 dner other upstream 1177404 38580285 ~ 38582820 (-)
AMCG00009472 NA other upstream 1425084 38827965 ~ 38837594 (-)
AMCG00009521 gigyf2,LOC107728389 other upstream 2718582 40121463 ~ 40157471 (-)

Expression

AMCG00009416(rnf13,LOC106613488,LOC107551383) Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
End of interactive chart.

AMCG00009416(rnf13,LOC106613488,LOC107551383) Expression in each Bioproject

Bar chart with 7 bars.
AMCG00009416(rnf13,LOC106613488,LOC107551383) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000015_01349369_01366864 ZNRF4, RNF13 coding CI01000015 null 1349369 ~ 1367511 (+)