AMCG00009439 (pde6d)


Basic Information

Item Value
gene id AMCG00009439
gene name pde6d
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37942071 ~ 37954055 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009439
TGTCAATCTACCGCGATCTATTTAGGGTAGGTTGATTAAGGGATCAGAGAGAGTACCGCTGTTGAGATTAAAACTGCACCTACATTGGCCTTATACGAATAGCTAATAgcgttttatttcatttccagCTGGTGTTAAAAGTAAATTTGTCCCATCACTTCCTGCccgtttggtttgtttttacacGCAAGAGAACTGAAGATTTGTGGGACAATGTCTTCACACGAAGACAGAGCCAAGGAGATACTGAAGGGGTTCAAACTAAACTGGATGAACCTGAGAGACGCGGAGACGGGCAAGGTGCTATGGCAGGGGACAGAAGACCTCTCGATCCCAGGGGTAGAGCACGAAGCGCGAGTTCCCAAAAAGATCTTGAAGTGCAAAGCGGTTTCGAGGGAGTTAAATTTCTCCTCAACGGAACAGATGGAGAAATTCCGCCTCGAACAGaaggtttattttaaaggacagtGCCTAGAAGagTGGTTCTTTGAGTTTGGCTTTGTGATCCCGAATTCCACAAACACGTGGCAGTCCTTGATAGAAGCCGCCCCAGAGTCGCAGATGATGCCGGCAAATGTTTTAACTGGCAACGTTGTGATAGAAACCAAATTCTTCGATGACCAGCTTCTGGTGAGCACGTCCCGAGTGCGGCTTTTCTACGTCTGAAGCGCATCACCTTCtttcactttgtgtttttttgattggttttattttggggggggtgggggtgttgtgGCTTGGGAAGGGGAGAATGGTTTCTCCTCGTCTCCTAGACTTTCAAGTGGTCCACTGAAGGCCCAGGCGGATCAAGTTTTGCTGGCGAGTTTTATCGAAGGGAAAAACGCAACGACCCAACTGGTGGGATGGCAAGACTCCCGCTGGCTCACTGCGGATACAAAGACTTTTTGTACATATGGGCAGAGATGCTCATTGCAACCAAccttgtaaattattttatttgtaccgttttgttgttgggttttttgtcttttgctttgtttgtttccgTAGCATCTAATTACCAGCTTGCAATGTACACTGCATCATTGTCAGCTAGTgtttctaaaaaagaaaaaaaatgtttttgcttccAGTTGTCATTGTTGATGTTACCATTTTATTCCATGGCtgtaactaaaaaaaaaaaaatttaaaatagtttgtgtttattactgaatgtaattatgaattaaacGATTCATAGGCACTAAACAAATCGAGGTCAGAGACgccaagtgttttgtttattttgggggAGGTGGGTGGGActcttttgttcctttttttttaattacaaaaggcTTTTTTAGTAGCTGTTAATAATTATCTTTCATACTGCTGCATAATAactcatgtatttattgacagAAATTCAAAGTAAACATGGTTTTCTGAATTTACATTCCATTTACAGCGTTCTTGATTCAGGACCTAAAAAGTTGATATTACCTGATTCTGCCATTCCATGACAGAACTGAATTGAGGGGTAAGCCTGgctgaatttgttttaaaagttgtaacttaaacaaaatcagtaatatatatattaagagacctcttaatttttttccagagctgtatatttaatgtgGCTTGAATTCGTAATGAACTCATCAATAGAACTGCAGacagtctgtttatttttccaaagtTTTTCCAATGCAAGCGCACAATACCCAAGAGTAGAACCTTTATTTGCACTGTTGGTTTTTACgttggaaaaataatattgttattgaCATAACTTTTATAGTTAGTGTGATCTGTATGTTCCAACTGTAGCAAAGACAAATGTACAGTGAATAAAGCCTACAGTAG

Function

symbol description
pde6d Acts upstream of or within eye development and kidney development. Predicted to be located in cytoplasmic vesicle membrane; cytoskeleton; and cytosol. Predicted to be active in cytoplasm. Is expressed in epiphysis; olfactory bulb; olfactory placode; and retina. Human ortholog(s) of this gene implicated in Joubert syndrome 22. Orthologous to human PDE6D (phosphodiesterase 6D).

NR:

description
PREDICTED: retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007601 visual perception biological_process
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG:

id description
K13758 PDE6D; retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009439 True 1818 mRNA 0.40 5 37942071 37954055

Neighbor

gene id symbol gene type direction distance location
AMCG00009440 phb2,LOC107591156,LOC107692360 coding downstream 8426 37928306 ~ 37933645 (-)
AMCG00009435 NA coding downstream 76833 37859097 ~ 37865238 (-)
AMCG00009436 LOC105023059 coding downstream 139224 37772580 ~ 37802847 (-)
AMCG00009434 NA coding downstream 202999 37716157 ~ 37739072 (-)
AMCG00009431 LOC108427717 coding downstream 260233 37673133 ~ 37681838 (-)
AMCG00009441 usp13,LOC107659032 coding upstream 109771 38063826 ~ 38088124 (-)
AMCG00009447 NA coding upstream 135301 38089356 ~ 38092156 (-)
AMCG00009448 actl6a,LOC107709208 coding upstream 140918 38094973 ~ 38105793 (-)
AMCG00009446 NA coding upstream 180028 38134083 ~ 38146947 (-)
AMCG00009445 pik3ca,LOC107574159 coding upstream 201670 38155725 ~ 38176524 (-)
G56927 NA non-coding downstream 207883 37636705 ~ 37734188 (-)
G56861 NA non-coding downstream 424417 37515969 ~ 37517654 (-)
G56831 LOC106583953,LOC106560594 non-coding downstream 519550 37418414 ~ 37422521 (-)
G56818 tsc22d2,LOC105899227 non-coding downstream 574402 37300544 ~ 37367669 (-)
G56795 NA non-coding downstream 674240 37201032 ~ 37267831 (-)
G57013 NA non-coding upstream 164373 38118428 ~ 38118843 (-)
G57015 NA non-coding upstream 171094 38125149 ~ 38125363 (-)
G57016 NA non-coding upstream 171926 38125981 ~ 38127340 (-)
G57017 NA non-coding upstream 173413 38127468 ~ 38127678 (-)
G57018 LOC107653516,LOC107558362,LOC107706720,LOC107564248,LOC107705311,LOC107550449 non-coding upstream 174929 38128984 ~ 38129202 (-)
AMCG00009437 NA other downstream 33103 37889502 ~ 37908968 (-)
AMCG00009417 NA other downstream 466036 37467254 ~ 37476035 (-)
AMCG00009408 NA other downstream 547083 37285576 ~ 37394988 (-)
AMCG00009409 selenot,LOC107681817,LOC106599070,LOC107708642 other downstream 656706 37280548 ~ 37285365 (-)
G56800 NA other downstream 721995 37215960 ~ 37220076 (-)
G57155 dner other upstream 626230 38580285 ~ 38582820 (-)
AMCG00009472 NA other upstream 873910 38827965 ~ 38837594 (-)
AMCG00009521 gigyf2,LOC107728389 other upstream 2167408 40121463 ~ 40157471 (-)
AMCG00009571 LOC107087052,LOC105890629 other upstream 3860504 41814559 ~ 41826934 (-)
AMCG00009582 NA other upstream 4087144 42041199 ~ 42056128 (-)

Expression


Co-expression Network