AMCG00009440 (phb2,LOC107591156,LOC107692360)


Basic Information

Item Value
gene id AMCG00009440
gene name phb2,LOC107591156,LOC107692360
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37928306 ~ 37933645 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009440
GGGGACCCTATGAGCTCCACTTGACTGGCCTCCTGGCTGTTGCTGTCATTGCAGAGGTTTTTGCAGCAGCTGAGGGACATGGCCGGTCGCATGTCTTCTGGCTCCAGGGGTGCCGGAATGGGCCTGAAACTGCTGTTTGGCGCCGGAGCATTGGCCTACGGGGTCAAAGAAGCCACGTACACAGTGGAAGGTGGGCAGAGGGCAATCATCTTCAGCAGGATTGGAGGGATGCAGGACACAGTGCTGGCTGAAGGTCTACACTTCAGGATACCTTGGTTCCAGTATCCTATCATCTATGACATCAGAGCGAGGCCCAGGAAGATCTCATCTCTCACCGGAAGCAAAGACTTGCAGATGGTGAACATCGGGCTGCGTGTCCTCTCCCGGCCGGTGGCCTCCAACCTGCCGTCTCTGTACCAGCAGCTGGGCAAGGACTACGACGAGCGCGTCCTGCCCTCCATCGTCAATGAGGTGCTGAAGAGCGTGGTGGCCAAGTTCAACGCCTCGCAGCTCATCACACAGAGAGCTCAGGTGTCCCTGCTGATCCGGCGCGAGCTGTTCGAGAGGGCCAGGGACTTCAACATCATCCTGGACGACGTGGCCATCACCGAGCTCAGCTTCAGCAGGGAGTACACCGCTGCTGTGGAGGCGAAACAAgtgtgtgtgtttacagccCAGCAGGAGGCTCAGCGGGCCCAGTTCTACGTGGAGAAGGCCAAGCAGGACCAGAGGCAGAAGATCATCCAGGCTGAGGGAGAGGCAACGGCCGCCAAGATGCTCGGAGAGGCCGTCACCAAGAACCCGGGGTACCTGAAGCTCAGGAGGATCCGCGCGGCGCAGAACATTGCCAAGACGGTGGCTGCTTCCCAGAACAAGGTGTACCTGAGTGCGGACAATTTAGTGCTCAATCTCCAAGACGACTCCTTTAACAAtttatcgTTGGACATGAAAAAGAAGTAACCACGTTCAGGAACACCTTCCATTCCATGCATTAGTTTTGAGACGTCTGCGAAGAACAAGTAAATGTTCATCCACTTCACGAGTGTCTGTCCCTTTGTCAATCTGCCTGTTTCTAGTTTTGTATGAAGGGGTTGTTTACCAGCGCAGTAAAAGAGTTGAAAGGCATACTGAATGGttcttggtttgtttgattgtggcccaatttgttttcttttggatATATAATCcagtagttttgttttatccGGTCACATGTTGGATATGGAGTCAGTAACAAGTATAGAACCAAATCTCGGTATACTGAGTGGATGAGACGTGGCAGTACTTGGTGTTATGGTGTCGAGTTGAGATCTGAAAGCATCGTGGAGATAAAGATTGGAATAATAATTTTGTCTGGACAGTGAATACATACATGGTTGCCAtctatgcatttttttctctcattattttcattatctaTTTTTGCTTAAAAGGGTTCAGTCTCTTCATGGTAACCGGTGCCATTTTAATACGGGGGCTCTGGCATCATCCACAAGTATCTGCACTCGCCCGTTCATGAAGTGAAAAGTACAAAGCTAGCTGAACTGATTCAGTAGTGTGAAACGTGGCTTCAAAAAGGACAGcgcaataaaatgtaaatttgggTTAAAAACTTGTTTGTCTCTCTGGAGTACTTTCACATTCAGGGACCAAACACAGTATGTTACTACCACTAGGGCATATACCAACATACCTTAAACCTTCTTCGGAACTGCACAACTGGAAAAACTGATATGAACTTTAATGGAAGTGATTAAAGGATGCATGAGTCAAATGATTTGTGTTGATCTGAGTAATATTGTATTGGC

Function

symbol description
phb2 Enables several functions, including protein C-terminus binding activity; protein N-terminus binding activity; and protein dimerization activity. Involved in several processes, including defense response to virus; positive regulation of cell cycle phase transition; and regulation of transcription, DNA-templated. Located in several cellular components, including cell surface; mitochondrial membrane; and nuclear matrix. Part of mitochondrial prohibitin complex.

NR:

description
PREDICTED: prohibitin-2-like isoform X2

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K17081 PHB2; prohibitin 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009440 True 1808 mRNA 0.49 9 37928306 37933645

Neighbor

gene id symbol gene type direction distance location
AMCG00009435 NA coding downstream 63068 37859097 ~ 37865238 (-)
AMCG00009436 LOC105023059 coding downstream 125459 37772580 ~ 37802847 (-)
AMCG00009434 NA coding downstream 189234 37716157 ~ 37739072 (-)
AMCG00009431 LOC108427717 coding downstream 246468 37673133 ~ 37681838 (-)
AMCG00009432 NA coding downstream 266243 37638539 ~ 37662063 (-)
AMCG00009439 pde6d coding upstream 8426 37942071 ~ 37954055 (-)
AMCG00009441 usp13,LOC107659032 coding upstream 130181 38063826 ~ 38088124 (-)
AMCG00009447 NA coding upstream 155711 38089356 ~ 38092156 (-)
AMCG00009448 actl6a,LOC107709208 coding upstream 161328 38094973 ~ 38105793 (-)
AMCG00009446 NA coding upstream 200438 38134083 ~ 38146947 (-)
G56927 NA non-coding downstream 194118 37636705 ~ 37734188 (-)
G56861 NA non-coding downstream 410652 37515969 ~ 37517654 (-)
G56831 LOC106583953,LOC106560594 non-coding downstream 505785 37418414 ~ 37422521 (-)
G56818 tsc22d2,LOC105899227 non-coding downstream 560637 37300544 ~ 37367669 (-)
G56795 NA non-coding downstream 660475 37201032 ~ 37267831 (-)
G57013 NA non-coding upstream 184783 38118428 ~ 38118843 (-)
G57015 NA non-coding upstream 191504 38125149 ~ 38125363 (-)
G57016 NA non-coding upstream 192336 38125981 ~ 38127340 (-)
G57017 NA non-coding upstream 193823 38127468 ~ 38127678 (-)
G57018 LOC107653516,LOC107558362,LOC107706720,LOC107564248,LOC107705311,LOC107550449 non-coding upstream 195339 38128984 ~ 38129202 (-)
AMCG00009437 NA other downstream 19338 37889502 ~ 37908968 (-)
AMCG00009417 NA other downstream 452271 37467254 ~ 37476035 (-)
AMCG00009408 NA other downstream 533318 37285576 ~ 37394988 (-)
AMCG00009409 selenot,LOC107681817,LOC106599070,LOC107708642 other downstream 642941 37280548 ~ 37285365 (-)
G56800 NA other downstream 708230 37215960 ~ 37220076 (-)
G57155 dner other upstream 646640 38580285 ~ 38582820 (-)
AMCG00009472 NA other upstream 894320 38827965 ~ 38837594 (-)
AMCG00009521 gigyf2,LOC107728389 other upstream 2187818 40121463 ~ 40157471 (-)
AMCG00009571 LOC107087052,LOC105890629 other upstream 3880914 41814559 ~ 41826934 (-)
AMCG00009582 NA other upstream 4107554 42041199 ~ 42056128 (-)

Expression


Co-expression Network