AMCG00009441 (usp13,LOC107659032)


Basic Information

Item Value
gene id AMCG00009441
gene name usp13,LOC107659032
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38063826 ~ 38088124 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009441
CTGCGATTTAAAAATAGCATCCTCTCtgcctgctctccctctccctctctctctccctcacacacacactgtggaaGCAGGAATGAGAAGATGGCTGCAGATCTTGGCGAGCTGCTAGTCCCTTACATGCCCACCATCAGAGTCCCCAGGACGGGCGACAGGGTTTTCAAGAGCGAGTGCGCCTTCTCCTTCGAGTCTCCCGAGTCCGAAGGCGGCCTCTACGTGTGTATGAACACTTTCCTGGGTTTTGGCAGGGAACACGTGGAGAGGCACTACCGTAAGACTGGCCAGTGTGTTTACATCCACCTGAAACGAACTATCAAAGAGAAAGCCACAGGAGCCTCGGGGGGTGTGGTGCCAAGGAGGAGAAATGGAAAAGTTTTTTTAGATTTAGAGCTGAACCAGGATTTTAATGGAGACGATTATGAATATGAAGACGAAGCCAAATTAGTGATATTCCCAGACCATTTTGAAATCCCCTTGCCCAATATTGAAGAACTGCCTGCACTGGTCACCATTGCCTGCGATGCGGTGCTCAACTCGCCGTCACCCTACAAGAAGCAGGAGCCCGACTCCTGGGAGGACGAGGTTCAGGTGTCCCGACATGCGAGGAGCCTGCGGCAACTGGACAATGGGGTCCGAATACCACCCAGCGGCTGGAAGTGTGCCAAGTGCGAGCTCCGGGAGAACCTGTGGCTGAACCTGACAGACGGAGCATTGCTTTGTGGGAAATGGTTCTTCGATGGCAGCGGGGGGAACGGACACGCCCTAGAGCACTACCGAGAGACCAACTACCCACTGGCTGTCAAACTGGGCACCATCACCCCCGATGGAGCCGaCGTGTATTCTTTTGATGAGGAGGAGGCGGTGCTCGATCCACACTTAGCAGAACATTTATCACACTTCGGAATCAACATGCTTCAGATGCAGAAAACGGAGAACGGCTTCACCGACAATGAGGTGAAGGCACGGGTCAGCGAGTGGGAGGTCATCCAGGAGGCGGGGCTGAAGCTAAAGCCAGTGTACGGCTCGGGCTACACCGGCATCAAGAACCTGGGAAACAGCTGCTACCTCGCCACGACTATGCAGGTGCTCTTCAGCATCCCAGAATTCCAGAGAGCATACGTGGGGAATCTACAGAGGATATTTGACTATTCTCCCCTGGATCCATCGCAAGATTTCAACACACAGATGGCCAAACTGGGCCATGGCCTCCTCTCTGGCCAGTACTCCAGACCTCCAGTGAAGTCTGAGCTGATAGAACAGGTGATGAAAGAAGACTACAAGCTCCAGCAGCGAGGGATCTCCCCCAAGATGTTCAAGGCCCTGAGGAACAGCGAGGGCTCGGAGAACCCCAGCGACGTCTTCCGCTTCCTGGTGGAGGAGCGCATCCAGTGCTGCCAGTCCAGGAAGGTGCGCTACTCACAGCGGGTCGACTACCTCATGCAGCTGCCTGCCCCCATCGAGGCGGCCTCCAACCGAGAGGAGCTGATTGTTTACGAGACGAAGCGGCGGGAGGCGGAGGCCAATCGGAGGACCCCCCCGGAGCCGGTGAGAGCGCGCATCCCTTTCAGCGCCTGCCTGCAGGCCTGCAAGGAGCCTGAGAACGTCAACGACTTCTGGAGCTCAGCCCTGCAGGCCAAATCCGCCGGGGTCAAAACATCCCGTTTCGCCTCATTTCCTGAATACCTGGTTGTACAGATTAAGAAATTCACCTTTGGAGTGGACTGGGTGCCTAAGAAATTAGACCTCTCCATAGACATGCCTGACTTCCTAGACATCTCACACCTGCGCGCCTCGGGGCTGCAGCCCGGGGAGGAGGAGCTGCCTGACCTCGCGCCGCCCATTGTCATTCCTGATGACCCCAGAGaTAACTCGATGAATAATTTCATGGACTCTCCCGACATCGACGAGTCTTCGGTGATGCAGCTGGCAGAGATGGGGTTCCCACTGGAAGCCTGTCGGAAGGCAGTTTACTACACGGGAAACATGGGCGCTGAGATGGCTTTCAACTGGATCATAGCCCATATGGAAGAGCCAGACTTCGCGGAGCCGCTTGCGCTCCCGGTGTTGAGCGACGACGTGCCACCTGCCGGGGGTGTGGTCCCAGGGCTTGACAGCCAGCCCCCCGAGGAGAGCGTGGCAATCCTCACCTCCATGGGTTTCTCCCGGCACCAGACCATCCAGGCCCTCAAAGCCACGAATAACAACCTGGAGAGGGCGCTGGACTGGATCTTCACCCACCCCGGCAGTGAGCAAGAGAGCGAGGCGGCTTCAGAAGCTGGCGACATGGAGGCCAACGACAATGCCAACGACAATGCCAACGCCAACGCCAACACcaaccccaccacccccacgAACCCAGAGCCCACCGGGCCACGAGTCCGGGATGGCCCAGGCCGGTACGAGCTCTTTGCCTTCATCAGCCACATGGGAACATCGACAATGTGCGGCCATTATGTGTGCCACATCAAAAAGGAGGGCAGATGGGTGATCTACAACGACCATAAAGTGTGCCTGTCGGAAAGGCCTCCTAAGGACTTGGGCTACATCTACTTTTATCACCAGATACCACGCAGCTAGGCGGGAGGCCTGTAGCTGTAGAAACATCCTTTTCTAGCTGGGGAGGTCGGGggagaaacaagaaaaagaaaaagaaatccaCTAGACAGACTAAACAAATGCTAAAGGGAAGACTAAGGACGTGGATCCAGCAAGATATCAGAAGATGGCAGCATCACTCCCATCAAGCCTGGCTCAAGAGGAAAATCCTTTGGTTTCATTGAATGTTCGTTGTGAGTTCTTCATTTGTCAGAGGTAGAGGTAGAGAAGAGAGGTGTGCAGTTTAGTTACTGAAAACGATAGCACAGCATTTTACATAtcagattttgttgttttttggggtgAGGGGGTGCGAGAGTGCTGCAAGCGGGTTTGTTTTCCTAtgccttttatcttttttatagAAATAGACTCTTCATTTTGCAGGTTAACTGTTTGATATTTTCATGAACAGCCGCAGAGTTAAAGTATTATGATCCATAATGGTGCAAGCAAATAAGTAGTAGCCTGATCTGAGGATAGAATGGGTCTTAGACTCTGGGGCGCAGTGTGTGGTCCATTCGGACCGGGTGATGAGACAGTCTCTCTACGGGACGGGATGTAATGGAACTCCGCTGCCACGCCCACACCTCTCCTTAGAAGAGGTGACTGGTGCCAGAAAGGATGGAGTATTTAAATCTGGGCTTTAAATCTGTCTTATTAAAGCACTGTCCCGTTACTGAGATGGCGGATTAAGcggaaatggaagaaaatgccTAAACCAAGACTCTTGCATCAACACACTTCCAGCAGCAGAACCAAAAAGTTGAGCCCAAGGGTTGCATCTTGTTTGGCGTCTGTCTAATGTGCCTTTTGAAATGGCAGACGTGAAGGTGTGAATTGAGGGATGTATTGGTCACCACCACTGAACATTGACAAAACTGGGGAAGTTAAAAGGCAGAACAAAGTAGAACGCGAGGGCTGTCACTTTTCACGCAACCTCGAAACTTCTAGATCTGCGGCCTAAAGCCGAATTCTGATTTACACTATCTGAACAGGTCTGGCATCTGTAGAAACGGGAGTCGATGGTACGGTTGATTTTTTTCCGCGTTGTCGCGCCTGCAGAGAATGAATCTCCCAGAactctgtgctgtagtgtcccaTGGGGCCGTTGCTCTTCCTTGCAGGGTTGCCTGCCATGCTGGAATCGGAGAGATTAGTGTCGCAGGCCATTCTCGCCAGTGGCTCTGCAGAGCAGGGGGTGTGATGCCATGGGATCCTTCATAAAGCCTGTCTTAGTGCCTGGTTTTCTTTATCATATAGAACAAAACCAGCTCAAAACATTTTGATGCAgtatcatttaaaatactttttcttttagtttcataaaagcactttaaatctaaaactaaatatattctttttgtaaaaaaataaaaaaataaatatatatatatatcagagaTCGCATATATGACCGTAACCCCTGCCCCATTCCTTTATAAATGCAAGCATTGTTTCAATTTATGtcaaaacatcacaaaatgCCAATGATGACAATGAAAAATGATTACTGTTAGTGAAATCCGCTTAAGCAGAATTTTTTTGTACAAATCCATGGAAGTGATAGTGCAGATAGTGAGAGTCCAGTTCTTCTAGATACAAACCGAGCAATGCGAACTACGAGACATcacactgtaataataatgacaagTAAAATGGCTTCCTTAGactatatacagtacatgaCTGTAGAAACCAAATTCATAGTGTATAATGCACCAGCTTATCACACTAAACCGATGCAGATGAGTTGCTTCGTGTCGTGAGCTTGTACGGCTTCGCAGGGGCTGCATCTTTTATGCCTGTAATATCAATTCTGATCATGTGAGTTcatcagtatttgtttttcactgacattttcttaaattttgCTTTAATATTCACAGTTGGGTGGAGAAAATAACTTAATCAAGTTTGTTTTTACTAACGAAGTTCAGTACGTTTCTCAGAGACACCATTTCCTTCAGGTTTAAAAGTACCTTTTCATTTAGTGACTGATTTAGTATCTGGTTCTTATTACCTGGATTAGTTCAATACAGTAGTGAAGATCTGCAAATAAAAGACAAACCAAAGGACCCTGGAGAAGTGGAGTTGTGCCCCCTCCCACAGCCTTATTGACCGAGACTGCAAGTCCTGCTCAAATGGTTAGGCTCCGGCCATCACATTGTCTGTGATGACTTGGAGGTTGAATATTATTGAAGATGTTGGCGTTTTAGAATCCCCCGatgttatgcatttaaaaaggtaaatgaaTGTATGGGAGATGACAGAGGGGTGTGCTGTATTGGCCCCATGGTATGTGAAGTGACACCTGTGTCTTCAGCACTGGCTCTCAGAGGTCTGAAGCCGGAGCTTTCGGAAACAGATGTCCGAACATCTGTCAGCGCAAGCAATATCAAAGGGGCAGATGCTCACACTTTCAAGCAAGGATACCTTTCTTTTTTCAACCTCCAGCACTGTGTGCCCCAGACAAACCtgtacagatgtttgttttttgtttaaatgtcctACATAAGCTGTAATGTCTAAGTCACCTGTAAGGTTGTCCCATAAGgttgaaacaatgtatttttattcacttAAAAATATGCAGCCAATGGCTTTCATTTTTGGTTCCagaattaaattgatattactTGTTTTTTCCAGCACACTACGAATGTATTCCTAATGGTGCTCAGAGCTGCAGGCAAACTTTGATGTGCTTTCGATGAAAAGGCTCTACatcaagttttttatttttttgaaaatggaCTGATTTGATTAGAACAAATCAAGAAACATCGCTAACTGGATTCACCAACCATATATGCCGTTGTAACCATTGATAGATATTTTTCTAAAGTTGTATTTGTTACACTGACTTACCATATCATAAAGAAAGTAAATCGCATTTTGGGTTTATGCaaagctttattatttaaaaaaataagggaaCTGGCAAACTTCTTCCCCAGCTGTGATACGGCACAGTCTGAAAGGAGGCGTTGCATGAAATCCCAATGTAGGCGTGAGGTGCAATATATAGATAAGATAACGCCTGGCGCTCTAGTGACTGAACGCACTGTAGAAACTGTATTCTCTGTTAGCtggtactgttttttttttcttctgagtACTAAATAATATACGAATGTCATAGTATTGATTACAGAAGCCAGTTTCTGAACTGGAACGATTTGTGCAGTGATGGCTGCTGTCTGTTGTGTCAAATTAATCCTTTACACACCTTCTGTCAATTGTTCTGAAGCGTGTGACTTCAAATATAGCCGGGCTAGCCCCCTTTATTGTATGTATAGCTGGCTATCAACACCAAATCCTATTCTGCTGTAATTTTCATGTCTCtgaggttttttgtttgttttctggctACCCGCACGGTCTATGCACTTAAACTGGAAATACTGTGGTTACTATGCAAGTCCtactgctgctctctctctgctctctgctctcgCTTTATTAGGATTCCTCTCTCGGTTCTTCACTCAAACTTTCCTTACCAATGTACCGACCGTCTCctgaattttcttttctttttctttctttctcttttactTCTTTGCCTCCTAGTTCTGCTGGTAGCACTGTAGATACTTTGGAGGGCAAAGTGATGCAAGACAGTCTTCTCTCGATCTTGGCATTTCTCTTGCTGGGTTGTAAGTGCTGGGTAACTTATAgcttacctttttgttttacaataccattttgtttgttatattaTCTGCACATGCACTGAAAGTTGACATTTGGTCGTTTAAGTTGTACAAGTTAAGTAGTATAGtgttcattttttctgtttgtttttcatttaatttgatgaaGGAAGGTAAtttcatctgtttttcttttctctttttgtttttgcaaatggCAATGTGCCaatcttgttttattaaaaaaaaaaaaaatcccacaagTAGTCAAATTAAAAGCTAGccagttttatttcttatttattgacAAATGAGTCTTCTACCTGCAAATTTGCCATTAGAAATGCTTTACTACTCAGTGTTTCTCCACACCTTCATTGAAGGCAAGATCCATAGTTAATGCTGTGTGTCCTAAATACTCTGTGTCAgcagtattatttaaaaaaatcaatcgGGTAAAACCTGAAAAAACGATGGCACAACTTAACCCATGGTGCTGCTTTCTTAT

Function

symbol description
usp13 Predicted to enable cysteine-type endopeptidase activity; thiol-dependent deubiquitinase; and ubiquitin binding activity. Predicted to be involved in several processes, including protein K63-linked deubiquitination; protein stabilization; and regulation of autophagy. Predicted to act upstream of or within autophagy and ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol and nucleus. Orthologous to human USP13 (ubiquitin specific peptidase 13).

NR:

description
ubiquitin carboxyl-terminal hydrolase 13 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0070536 protein K63-linked deubiquitination biological_process
GO:0008283 cell population proliferation biological_process
GO:0010506 regulation of autophagy biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0050821 protein stabilization biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0008242 omega peptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0043130 ubiquitin binding molecular_function

KEGG:

id description
K11836 USP5_13, UBP14; ubiquitin carboxyl-terminal hydrolase 5/13

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009441 True 6768 mRNA 0.46 21 38063826 38088124

Neighbor

gene id symbol gene type direction distance location
AMCG00009439 pde6d coding downstream 109771 37942071 ~ 37954055 (-)
AMCG00009440 phb2,LOC107591156,LOC107692360 coding downstream 130181 37928306 ~ 37933645 (-)
AMCG00009435 NA coding downstream 198588 37859097 ~ 37865238 (-)
AMCG00009436 LOC105023059 coding downstream 260979 37772580 ~ 37802847 (-)
AMCG00009434 NA coding downstream 324754 37716157 ~ 37739072 (-)
AMCG00009447 NA coding upstream 1232 38089356 ~ 38092156 (-)
AMCG00009448 actl6a,LOC107709208 coding upstream 6849 38094973 ~ 38105793 (-)
AMCG00009446 NA coding upstream 45959 38134083 ~ 38146947 (-)
AMCG00009445 pik3ca,LOC107574159 coding upstream 67601 38155725 ~ 38176524 (-)
AMCG00009451 NA coding upstream 155083 38243207 ~ 38259816 (-)
G56927 NA non-coding downstream 329638 37636705 ~ 37734188 (-)
G56861 NA non-coding downstream 546172 37515969 ~ 37517654 (-)
G56831 LOC106583953,LOC106560594 non-coding downstream 641305 37418414 ~ 37422521 (-)
G56818 tsc22d2,LOC105899227 non-coding downstream 696157 37300544 ~ 37367669 (-)
G56795 NA non-coding downstream 795995 37201032 ~ 37267831 (-)
G57013 NA non-coding upstream 30304 38118428 ~ 38118843 (-)
G57015 NA non-coding upstream 37025 38125149 ~ 38125363 (-)
G57016 NA non-coding upstream 37857 38125981 ~ 38127340 (-)
G57017 NA non-coding upstream 39344 38127468 ~ 38127678 (-)
G57018 LOC107653516,LOC107558362,LOC107706720,LOC107564248,LOC107705311,LOC107550449 non-coding upstream 40860 38128984 ~ 38129202 (-)
AMCG00009437 NA other downstream 154858 37889502 ~ 37908968 (-)
AMCG00009417 NA other downstream 587791 37467254 ~ 37476035 (-)
AMCG00009408 NA other downstream 668838 37285576 ~ 37394988 (-)
AMCG00009409 selenot,LOC107681817,LOC106599070,LOC107708642 other downstream 778461 37280548 ~ 37285365 (-)
G56800 NA other downstream 843750 37215960 ~ 37220076 (-)
G57155 dner other upstream 492161 38580285 ~ 38582820 (-)
AMCG00009472 NA other upstream 739841 38827965 ~ 38837594 (-)
AMCG00009521 gigyf2,LOC107728389 other upstream 2033339 40121463 ~ 40157471 (-)
AMCG00009571 LOC107087052,LOC105890629 other upstream 3726435 41814559 ~ 41826934 (-)
AMCG00009582 NA other upstream 3953075 42041199 ~ 42056128 (-)

Expression


Co-expression Network