AMCG00009442


Basic Information

Item Value
gene id AMCG00009442
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38147975 ~ 38150946 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009442
GATAAACGATTGTGTGCAAAGCAGTTTCCCACCCAGACTGACTGCAGCCCAGAGGAGTTTATGACCTCCCTGTCTACTGAGGTTTCCATAGAGATGTGGCGAGTTGCTGCAGCAGCAATGCCCAGGGACTCACTGTCCAGGGGCCAAGTGGATAGGGGCAATGAGAGCTCTAAGACCCAGGCACCAGTGTCCAGTGCCGGGGAGGACAGAGCCATCCTGCTGGGCATATCCATGATGGGCTTCTCTGTGCTCATGTTCTTTGTGTTTGGAATCACGCTGATAAAACCCTTTCTGCTGAGCAACTGGAGCGAGGAGACCAACTGCACGGTGACCCGGGCCGAGATCCTGAAGGACTGGGTGGACTGCACCCCGAGCTGTGCGGTGAACTGTAGCTTCAGCTGCGGGGTGGATTGCCAGGGCCCGGGCCACTACCCCTGCCTGCAGGTGTTCGCCTGCCTCTCCTCCTCGGGACAGAAGGCCCTCCTGCACTACGATGACCAGGCCTTCCAGCTCAACTCCGAGTGCTTCTACGTGCCGAGGTGCCTGAAGGATGAGGACGAGCTGCTGCGCCAAGTCAGAGAGGTAAAGCGCTTGCTGCTGCAGGAGTCTGCCGGCGGCTCCCTGCCGTGCCGCCACAGCCCAGACAAGCACCCGCACCACGCCATCCTGCGCAGGAAGTACCAGGGGGACGAGGTGTTGCGCTTGCTGCAGTGGCCGGCGCTGATGGTGACCGGGGGGGCGCTGATCGTGGCCCTGGTGAGGCTCAATCAGTACCTGGCACGCCTCTGCTCCGAGATCTGTGGCGCTCAGGAGCCGTGGGACCGCCCCTCCGCGGTGCCGGTGGGCAACAGGCTATACCAGATCCTGACCTTTAGGCGCTCCATGCACGCAGCACTGAACTCCTGA

Function

GO: NA

KEGG:

id description
K04939 KCNMB3; potassium large conductance calcium-activated channel subfamily M beta member 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009442 True 906 mRNA 0.61 4 38147975 38150946

Neighbor

gene id symbol gene type direction distance location
AMCG00009443 gnb4,LOC108270972 coding upstream 18571 38125308 ~ 38129404 (+)
AMCG00009444 NA coding upstream 53852 38092400 ~ 38094123 (+)
AMCG00009438 NA coding upstream 88702 38031385 ~ 38059273 (+)
AMCG00009427 NA coding upstream 526585 37619502 ~ 37621390 (+)
AMCG00009419 NA coding upstream 626522 37520323 ~ 37521453 (+)
AMCG00009449 NA coding downstream 43901 38194847 ~ 38206084 (+)
AMCG00009450 NA coding downstream 56038 38206984 ~ 38241384 (+)
AMCG00009457 NA coding downstream 183102 38334048 ~ 38354970 (+)
AMCG00009456 NA coding downstream 316321 38467267 ~ 38474039 (+)
AMCG00009462 trip12 coding downstream 330167 38481113 ~ 38511022 (+)
G56995 NA non-coding upstream 14009 38130082 ~ 38133966 (+)
G56982 NA non-coding upstream 79822 38063790 ~ 38068153 (+)
G56775 NA non-coding upstream 856310 37285843 ~ 37291665 (+)
G56754 NA non-coding upstream 952887 37193726 ~ 37195088 (+)
G56747 NA non-coding upstream 959197 37188568 ~ 37188778 (+)
G57036 NA non-coding downstream 51848 38202794 ~ 38280479 (+)
G57161 NA non-coding downstream 476973 38627919 ~ 38628135 (+)
G57164 NA non-coding downstream 482151 38633097 ~ 38633351 (+)
G57175 NA non-coding downstream 606434 38757380 ~ 38834945 (+)
G57286 NA non-coding downstream 1152391 39303337 ~ 39306230 (+)
AMCG00009428 NA other upstream 531279 37608305 ~ 37616696 (+)
AMCG00009429 NA other upstream 542851 37530822 ~ 37605124 (+)
AMCG00009415 wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084 other upstream 684470 37422017 ~ 37463505 (+)
AMCG00009405 pfn2,LOC105899220,LOC106598797,LOC105028925 other upstream 780304 37348108 ~ 37367671 (+)
AMCG00009404 NA other upstream 850966 37293903 ~ 37297009 (+)
G57105 NA other downstream 291309 38442255 ~ 38457592 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other downstream 1283954 39434900 ~ 39437017 (+)
G57430 NA other downstream 1797060 39948006 ~ 39949200 (+)
AMCG00009516 NA other downstream 1935528 40086474 ~ 40105052 (+)
G57604 NA other downstream 2839856 40990802 ~ 40994659 (+)

Expression


Co-expression Network