AMCG00009447


Basic Information

Item Value
gene id AMCG00009447
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38089356 ~ 38092156 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009447
GCCCTCAATAACAATGGTGGGCATGAGCGTCCTTCGGTCGGCAGCTGCTTTTGCAGCCCGACTAAACCCACTAAAGCATGGGGTGTCAAAGGGGAATATACTCTCCGGGACCGTCCCACGCACGGAGAACGTTACTGTGCGTTTTGGGAgccatggaaaacaaatgtttgtgaTCAAGCCCACCGAGTACTACGACAAGAGATTTCTCCGGTTActgAGATACTACATCTTGTTAACGGGCATCCCAGTTGCTGTTTTCCTCACGTATGTCAACATTTTTATCGGTGAAGCAGAGCTGTCTGAAATCCCAGAAGGTTATGTACCAGAGCACTGGGAGTACCACAAGCACCCCATCACCAGGTGGATTGCACGCAACCTCTACGACCCGCCAGAGAAGAACTACGAGAAGATGATGGCCCTGATACAGATGGAGACCGAAAAGGCAGAGATGAGGTTGACGGAGCAGGATGTCCGCAAGATGATGCGAACAAAGGGAGACGGACCCTGGTTCCACCTGGAGACGATGGACAAGTCTCTCATCGACTACTCTCCCAAATCCACACCGGACAACTGAGAGAGCCCCAGGCAGCTGTGCGCTACTGAGTGTGCATCTAAACACTCAGCCGTGAcctgttaataaatgttcccgtgtatatgtttgtataatTGCTCAATGGCTCCAATAAAGCCCATGTTTCAATA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function

KEGG:

id description
K03961 NDUFB5; NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009447 True 702 mRNA 0.50 6 38089356 38092156

Neighbor

gene id symbol gene type direction distance location
AMCG00009441 usp13,LOC107659032 coding downstream 1232 38063826 ~ 38088124 (-)
AMCG00009439 pde6d coding downstream 135301 37942071 ~ 37954055 (-)
AMCG00009440 phb2,LOC107591156,LOC107692360 coding downstream 155711 37928306 ~ 37933645 (-)
AMCG00009435 NA coding downstream 224118 37859097 ~ 37865238 (-)
AMCG00009436 LOC105023059 coding downstream 286509 37772580 ~ 37802847 (-)
AMCG00009448 actl6a,LOC107709208 coding upstream 2817 38094973 ~ 38105793 (-)
AMCG00009446 NA coding upstream 41927 38134083 ~ 38146947 (-)
AMCG00009445 pik3ca,LOC107574159 coding upstream 63569 38155725 ~ 38176524 (-)
AMCG00009451 NA coding upstream 151051 38243207 ~ 38259816 (-)
AMCG00009452 NA coding upstream 174043 38266199 ~ 38271710 (-)
G56927 NA non-coding downstream 355168 37636705 ~ 37734188 (-)
G56861 NA non-coding downstream 571702 37515969 ~ 37517654 (-)
G56831 LOC106583953,LOC106560594 non-coding downstream 666835 37418414 ~ 37422521 (-)
G56818 tsc22d2,LOC105899227 non-coding downstream 721687 37300544 ~ 37367669 (-)
G56795 NA non-coding downstream 821525 37201032 ~ 37267831 (-)
G57013 NA non-coding upstream 26272 38118428 ~ 38118843 (-)
G57015 NA non-coding upstream 32993 38125149 ~ 38125363 (-)
G57016 NA non-coding upstream 33825 38125981 ~ 38127340 (-)
G57017 NA non-coding upstream 35312 38127468 ~ 38127678 (-)
G57018 LOC107653516,LOC107558362,LOC107706720,LOC107564248,LOC107705311,LOC107550449 non-coding upstream 36828 38128984 ~ 38129202 (-)
AMCG00009437 NA other downstream 180388 37889502 ~ 37908968 (-)
AMCG00009417 NA other downstream 613321 37467254 ~ 37476035 (-)
AMCG00009408 NA other downstream 694368 37285576 ~ 37394988 (-)
AMCG00009409 selenot,LOC107681817,LOC106599070,LOC107708642 other downstream 803991 37280548 ~ 37285365 (-)
G56800 NA other downstream 869280 37215960 ~ 37220076 (-)
G57155 dner other upstream 488129 38580285 ~ 38582820 (-)
AMCG00009472 NA other upstream 735809 38827965 ~ 38837594 (-)
AMCG00009521 gigyf2,LOC107728389 other upstream 2029307 40121463 ~ 40157471 (-)
AMCG00009571 LOC107087052,LOC105890629 other upstream 3722403 41814559 ~ 41826934 (-)
AMCG00009582 NA other upstream 3949043 42041199 ~ 42056128 (-)

Expression


Co-expression Network