AMCG00009449


Basic Information

Item Value
gene id AMCG00009449
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38194847 ~ 38206084 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009449
TACCACTACAGTTCACTGCAGCTGTTCGCAGAAAGCGCTTTTCCGCGCGTGTCTGCGGGTGAGCAGCTCTGCGTGTCTCTGTTGTTTTGCGGCGAAGATGCGTTTGCACAACATTAACACCGCGCCGCACTGTGTTATACCTGTGCGGTGAAAGAAACGCGCCGAGCCGGGAGTCGCCGCATCGCATCGGATGTTTGCAGGACTTCGGCCTTTGAAGTTTGAGACACGCCGGGCTGTTGGAAGTGTGTGACTGCAGGGCAGCGGGGTCGGGCAGCACTGAAGGTTGCGGGTGAAACAGCTGCCGCCACCTCTGGCTTTTGGACCCCACTCACGCTTGAATGGTGGCATCCGCAAGCCCAGCAGACACATAGTAGCACACCTTGGCTTGGGTGGCTACAAAGTTGATATCCGTGTGTTCCTGTATAAAACGATGGTTCCCTCACAAGCACCCCAGGCTGGGAGGACCAGAAAGGCAGGGAAATAATGCACTAGCGCAGAGACCGGGAGCTGCATGTGTGGAAATCCCAGAAGATGCCAGCTGTTGCTTCGGTGCCGAATAAGACGTGTTGGGTTGTCTTTGGATGTGCTGTATATTGATTGCAATATAGCAGAATGAGCTCCCAGAGAAACGGGTTTCAGAAGGACATGTATATCCTGTCAGTGGATGTGGGCACGACGTCTATCCGAGGCCATGTGTACGACAGGGAGGCACAGATTAAAGGATCGAGCACCAAACCGATCAGTGTTCTGTACCCCAACCCTGGCTGGGTGGAGATGGACCCTGAGAAGCTTTGGCAGCAGTTTATTGCAGTGGTCAAAGGAGCTGTACATGGTTGGAGAACAGGAAAACCATTTCACAACTTCATCAGCTGGCAGGACCTCAGAGCCTCTGAACTTGTCAAAACATGGAACAACTCTTTTGTATTGAAGGCCGTCCACGGgacaacaaaaatgttacacTTCATTACCAGGCAGAAACGTTTCCTGGCTGCAAGTCTGATTGTCTTTTCCACACAGCATGTCACATTCCGCCTCGCCTGGGCCCTGGAGAACATAAAAGAGGTAAAAAAAGCTGCTGAAGAGGGAAATTGCTGCTTTGGGACAATTGACACTTGGCTGCTGTACAAACTCACTAAAGgtGCTGTTCATGCTACAGATTATTCCAATGCAAGTACCACAGGGATCTATGATTCGTATCAGATGTGCTGGAGCGGCTTTCTTTGCTCCCTCGTCTCTCTGCCAATCTCTATATTCCCTACGGTGGAGAACACGGGTCACAACTTCGGTTTCACAGACTCCAGCATCTTTGGAATACCAATACCGATCATGTCTGTCGTCGCGGATCAACAGGCCGCGATGTTCGGGGAATGCTGCTTTGACATAGGGGATGTGAAGATCACAATGGGAACAGGCACATTCATGGACATCAACACCGGAAACAAACCTCATACGTCTATGTCTGGACTGTATCCACTCGTGGGCTGGAAAATGGGCGCGGACCTTGTCTTTTTAGCTGAAGGCAATGCCGCAGACACTGGCACAGCCATCAAATGGGCACAAGAACTGGACCTGTTCACTGAAGAAACTGAGACAGAGGTGATGGCTAACAGTGTGGAAGATGCAGATGGGGTCTGTTTTGTGCCGTCCTTCAGTGGTTTACAGGCTCCCGTGAACGACCCCAAAGCCTGCGCTGCGTTCATGGGTTTGAAACCCTCGACGACTAAAAGCCACTTAGTGCGAGCGATCCTGGAGTCCGTAGCGTTCAGgAACAAGCAGCTGTATGATATAATGCTTCAAGAGATGCACATTCCCATCACAAATATAAgGCCCTGTCACTTCGACATGTCAAGTCTCGGGGCAGCGTACATCGCGGGCCTGGGAGTGGGTTTCTGGAAGAGcaaagaagaaataaagcaCCTGAGATGCACAGAGAAGGTCTTCTTCCCACAGAATATCTGGAAAGATTATAAACCCATCATGGAGAACTGGGAGAAAGCTCTGATGCGCTCCATGCACTGGTACGGCAAGCGATAGCTACTGATCGgtctgatactgatactgaatCATCCACTTGAATGTCAATGCACAAGCTAGTATAACCTCAGAATTCAAGCACTGCTGCAAATACACTGCTGATCACAGCATTCATGACTTCTAGAAGATAAGATCAGCAACAAATTGTTTCTAGTCgatagtttttagtttttgttatttttaaaatactaaagCACAGTTAGCCAAAGCCATAGATCTTTAACCAGTTCAAaagatttaaattttttaatgattacatATTATTTCTTGTGAAATGTATCATTAATCTTTCATAATGTGCCTGCTAAGGAGGGCTGAAGAATTCTCTGATGCATGATTTTGCAAAGCCAATATATAAAGTGTAACTCTATAGTATATAAAAACGAATTTCCCACTCTCGAAGTTTTTGAATGTGACTAGAAGGTAAATGTGGCCTTAATTAATATCAGACCCAAATATTATTCCCCCAAGACGAGGTTTaacttcttaaaatgtaatttatttttcttggtgtATGTCCTCTTGCTATGCTGTTATAACGACAGACTAGGTAGATATATGGTACTTCTATATTTAGTTTATTCACGGATGTCTGATCTTGGCTAATGCTGTCTACATTATGCATGTTAATGGGATTGGTATGAAGTAAGGATATAGCTGTCTATAATGAACACAATATATAATCTTACTGACAGAATTCTtccttgatttaatttaaagcacTGTGATAGGACAGGATCCTGGAAACTATAGTGATGACTATGGAATGATAGGAGATTGGTTGTTGCTGAACTGATCAAAAGCCAAACGcgttttgtttaaattacttttgtagTGGTAATGGTTTGCAATCTCGTAACATCGTCGGAACAATCCAGGCCTGCACTCTTCAATAATTACATACCTCTTTTTGCTTAATTTCTCTTCTGGAGGACATAGTCTTATGTCTATTACGTAAACCAGCTCTTTCTTAACCTATGATCTGGAACACACTTTGCCGTTTTCTGTACTTGGTACTACAGAGATAACTGTTAGATACTGATAAAGTGTAATGTCTGAATAAACTCTGCTTAGTAGTGAGAACATTTTCTCAGATTGGAAAAATGTACCTATTTCAATAGGTAGTGTGTGTCCAACAGGTTGTGTAacctataattatattttgctaATGAAATATGGGTAATGGCCATGCACACATTTATTCTGTATACACCGTGTCTGCTGGCTTGTTGTTTGTACTCGTAATGTCTGCTGCAGATGTGTaaaagtgtaaattaaaaaggttaaatCATGCATTTATTGCTAATTATTATACTTTAACCTGTATTTTCCCTAGTGGGCTTATTAAACAAATTCAaggttcatatttttttaaacacaacataGATTGTTTACAGAACTTTTTCAAATACCTTTACTGTTCAGAAAGAAATTGTAAAGATAGGAAGCCATTGtgaatattgtaaaaataaatggaatattCAAACAttgccaaatatatatttatactgtatatttactgagaaacaaaatcaaatcagttttattaactgttttttttaattgaactgtaCTCTGTTAGTCGTCCATTGTATTATTAAGGATGGTCTTACATGCAATTTTATAGTATTTCATGTTTATGGAGAATGTAATTCCATATaagaaatgcattcatattaGAAATATGTATGTGATGTTTTCAGCCTGCATACAGGTGAAACATTTGAGTATCTGAAATGGTCTGTAATCCAGAGTTGTGAAAACGTCATATGACTGGAATTTACTAATTCTCTACATGCATTGAAAGTGTAAATTTTTACGTGGAAAATAACCATAAAACAATCTGTACAAGATTAAAAgtgttatgttttaatgtattaaaaagtggGGTGAGTGTATCATTTGATGAGGAATAAT

Function

GO: NA

KEGG:

id description
K19583 GK5; putative glycerol kinase 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009449 True 3951 mRNA 0.42 15 38194847 38206084

Neighbor

gene id symbol gene type direction distance location
AMCG00009442 NA coding upstream 43901 38147975 ~ 38150946 (+)
AMCG00009443 gnb4,LOC108270972 coding upstream 65443 38125308 ~ 38129404 (+)
AMCG00009444 NA coding upstream 100724 38092400 ~ 38094123 (+)
AMCG00009438 NA coding upstream 135574 38031385 ~ 38059273 (+)
AMCG00009427 NA coding upstream 573457 37619502 ~ 37621390 (+)
AMCG00009450 NA coding downstream 900 38206984 ~ 38241384 (+)
AMCG00009457 NA coding downstream 127964 38334048 ~ 38354970 (+)
AMCG00009456 NA coding downstream 261183 38467267 ~ 38474039 (+)
AMCG00009462 trip12 coding downstream 275029 38481113 ~ 38511022 (+)
AMCG00009463 dner coding downstream 335905 38541989 ~ 38583431 (+)
G56995 NA non-coding upstream 60881 38130082 ~ 38133966 (+)
G56982 NA non-coding upstream 126694 38063790 ~ 38068153 (+)
G56775 NA non-coding upstream 903182 37285843 ~ 37291665 (+)
G56754 NA non-coding upstream 999759 37193726 ~ 37195088 (+)
G56747 NA non-coding upstream 1006069 37188568 ~ 37188778 (+)
G57161 NA non-coding downstream 421835 38627919 ~ 38628135 (+)
G57164 NA non-coding downstream 427013 38633097 ~ 38633351 (+)
G57175 NA non-coding downstream 551296 38757380 ~ 38834945 (+)
G57286 NA non-coding downstream 1097253 39303337 ~ 39306230 (+)
G57287 NA non-coding downstream 1100404 39306488 ~ 39306774 (+)
AMCG00009428 NA other upstream 578151 37608305 ~ 37616696 (+)
AMCG00009429 NA other upstream 589723 37530822 ~ 37605124 (+)
AMCG00009415 wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084 other upstream 731342 37422017 ~ 37463505 (+)
AMCG00009405 pfn2,LOC105899220,LOC106598797,LOC105028925 other upstream 827176 37348108 ~ 37367671 (+)
AMCG00009404 NA other upstream 897838 37293903 ~ 37297009 (+)
G57105 NA other downstream 236171 38442255 ~ 38457592 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other downstream 1228816 39434900 ~ 39437017 (+)
G57430 NA other downstream 1741922 39948006 ~ 39949200 (+)
AMCG00009516 NA other downstream 1880390 40086474 ~ 40105052 (+)
G57604 NA other downstream 2784718 40990802 ~ 40994659 (+)

Expression


Co-expression Network