AMCG00009458


Basic Information

Item Value
gene id AMCG00009458
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38357920 ~ 38367533 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009458
ttaaaactggTCCGGTGCTGTCTACGAGAGCGCAGAAATCCTGGTGATTTCTCAAGGTTTCTCATATTTCCACAAAACTCCTGCAGCAGAGACGCCCGAAGTGCACAGAAAGGAGGggagtttaatttaaacaagaGAATGGAAGTTTTATGCCCAATCTTTATCCTGCTGGTTTTCTTGGCACCTTTTGAATATTGCTCTGAAGCTCTCCCCCAGGACACTTTAAAGCCCATGGAGGGCGAAAATATTTGCTTTCCTTATGACGACTCCAAACCCTCTCACCTTCTCTTCACTGGCAACAGCTCGGCAGGACCTGTCCCCATTATGCATTTTAAGGTCTCCGAAATAACTAGTTTTGTGTCGGAGTTTGAGCTTCGCACGTTTGATCCTGAGGGCATCATTTTCTTTGGGGACCTAGGAGGAAACCGCAATTGGTTCCTTTTAGCTCTTCGTGAAAAGCTCCTGGAAATTCAAATCCAAAATAACGTTGCCCTGACCACAGTGGATGGGGGGCCCATTATCAGCGATGGAGAGTGGAGAAAGATAACGGTTTTGAAGGAGGACTCCAGTGTAATTGTGAAAGTTGCCGATAAAACCGTTGTTAAAGTGCAGGAGCCTGGAGAGCAAGTGGAGGTGAACAGGGAGACTGACGTCCTCCGCATTGGGATCGGGGCTGTGTTCCCAAACGTCACCATCAAACTAACTGTGAACCCTCATTTTGACGGTTGCCTTCGAAACTGGAACTGGGTACAGCGGGACTCGAGTCTTCTCACCCAGCTGCTGCAGTCTTCAGAAACTCAACGGTGCTGGCAGAACATCACCCCAGGGTCCTACTTCCCCGGACAGGGAGCTGCAGCATTGGATGCCCAGCTGTTCTTTATGAATTTCACCACTGTTGGCACTGGACACTGGAGGCTGGTGCTGGAGCTGTATTTCCGGCCTGTGATGGATAGTGGTATTCTGTTTGCTGTGGTGGATTCGCAAAACAACGTAACCTTTTCCATTAACATGGATCAAATAGAACAGACCTTTGTCCTTACGATCAGAGGAGAGGTCTTTGGCACTCGGAGCTTTCCTCCAGGCCTGTGTTCTGGGGAGACTCAGTTCCTGCATCTCACTCTCGCTGACAACAAGCTGGAGATGATTTTGGGAGCAGAGAAAGAAATGAGGCTCGTCTCTGCTGATAGTTTTGAAGCTCTGAAATCTGTGTGGAATCAGCAAGGCACGATGGTGTATTTGGGAGGATTACCAGACCCATATGCTCCTCCATCCACTTCATTTTTTCACGGCTGCTTGCAAATGAAGATACAAGGAACTCTGGTGGATCTCGATATGGCAACGATCAAGCACGGCGAGATCAGATCGCACAGCTGTCCTGCAGCTTTGGATCTTGGAGATGGGAAGTGAAAGCAATGTTTTACTGCACTGAGTTTTTACTATGTACAAAGCTAGACTATGAAATAACTATTAGATACTCAGTTGGGAATTATGGGTAGGTAcatcaaagatttgatttgaatcaAGGCCTTTTGTGTCACTTATAAACCTTCTTGTGTcctacataattaaaacatgtatagcAGATATATGACTTACATTTACTATGAGTTATTTTACAAGCAATTCTAGAGCCATATAAGCCATATGAGTGAAGGTTACGAGACTTGAACAGGGAAGTCCTCACTTGGCATATTTCTTGGCATATAACTTGGTGTGTTCACCTACTGCCAAAGAATGAAACGCTCAGTATTTAGACAAATGCGTATAGTATAATAAGTGCATGTAACACATAAATGTATTCctaaataatagttattatatgtatttgattgCAATTGTTTACAGAGGACTTTTCAACCCTAGGTATATGCAATctcataaatgtattattactactcAGCTGAACCCAACTTGACATTGCCAACCCATTTGAAAACCTGCGCCACACATGCAAGGCTATTTCCAGTTTGAATCGTGTAACTTTTATGTACAATCTTTATTTTCCCTATAGGCAGGCATGTTCCTTAGTATCTTTAAGATGGGGCTTACAGCAAGGCCCTCCAGATGTCTCTTGAATCTTTTCTTTGCTTTGGGTGATAAAAGGGAATTGATGTGAAGCTGTTTTTAAATCCCAGAGTTTTACCTAAGACCTACAGTTAGTCAGATcattaaataatagaaaagcAATTATATCTTTTTTCCAGTTCGTATCCCTGAGCTTACCATCCAccttaacattattattgtgaCCCATTATTGAAGTACTGCAATAACATTCTAGAAGATTAAATACACTTTGCGTCATTTGTCCTTCAACAGTATGCTGTTAACCCATGCCTATCTCCGGCCCCAGTCTTGTTCtgactgcttttttctttccctgtgtccCAAAAAGAATCGCAAGTACTTCAATTCTATTCTAACCTAATTTGAAGTTCATAGATATCGATATATATTCCTCATCTGAATACATCTCATTGTCTATAGcgtttaataatatattttaggcATTGCTCAGATGTACCTTGGTAAATTGATcattatttaaactattaaactattttactGAGCAACACTATGTATGGTTAGTTTTTTCGTTTTTAAACCAgagcagaaatacattttcaatccaTCTATAAGTTGCCATTATTGTTTTAAGTGCTATCttccttatttgttttcagtgcacCTGGTCTGAaacacaatgactgactgacttaaGTAAACTAAATAACCCCTGCAAGTTAAATATAATGATACCTAACAGTTATCTTCAATCAAAGCACATTGTAATGTATTCTAAATCCCTTTCATTTGGAGGTGGCCAGCTTCATAAAACTGAGTGATTGTACATGAGGAAAAAATTAACCGCATCAAGAAGAGTTAAACGGACACAGGAAGCACTGGCAAGCACTCTTTaagttgaaaaaacaaaattacacaaaGCTAACAAATTACAGATAGAGGACTCAAGGCAAAGTACTTCAAAGCTCAAGCATTTACAGGGAGCTTATAGTCTTGGCTTTCAATTAACTTGATACCTAATTACATCCAATATGGCATTTGGCCCCATGCGTGCCCTGCTCTGATCATGTCTGCCTGTTTTCAGTTCTCATGTGTTCCCTACTTGCACTGGAGCGTCTTCAACAATAAGTGCATTCTATAGATTCTAGGAATATAAAGCATTATGTCTGGGTTCATATAGGTGCTTATCtaatgtcatcatcatcatcttcttttcttctttttcttcgtTCTGTTGTTCTATTTCTATGGTCTGCGCTTTATTATACTGCCACTATGTAGCATTGTTACTTAGCTGAGttcaatatacaaaaaaaaatagaagggAAATAATCAAATGTTAAGTAATCCTTGCATTCCAGATGACACAGACTTGCAAAATTAATACTTGATGTATTGCAAAAGGGCTTTTTATGCAAGGCTAGCACCAGGCTCGGGCAGAAGGCACAAACAGCCAAAGCCTTAGTTAAcctttctgtttaattaaagtgtACGCTGGTACGCTTTGGCTCCCTACTGACTTCAAAGTCTGAACAGCCTTCAGTTGCTTAACAAAGTTCTTGAAACGTAgcccaattaaattaaattaccacTGTGATATTTCCATGCCCCCTAAGATCAGAATTGTTGCCATAGAACCCAATGTgttttcggttttgttttgtttggtgaaATGAACACGACATAAGACGTAAGGCGAGAAAGGCAAAAAAGAAGATGGCTAATGTCCAGTTGCTAATTTATGAGTTTGTGCAGACTTACAGGGTTGTCGAGCTTTTTAATGGGGTTCCTTGCTAGCTGGGGACCATTTTAGCACAACCAAGTCACATAAAAGCTGTGAATCTGGTTTCCCAAAAGGATGGAGAGAATTTAGATGGTCGGAGAGTGAAAATCATACACAACTGATTATGACAAGCGAGTTGGAAGCATGTCCTCAGTTCGCTTTGCTGTCACTTAATCCATCATAGTCTTGGCTTATACAACGAAATCATGTATTTTCTCAAAAGGGAAAAGGTATATAGTGTCAACCTAAGCCAGAGTCAGTTAACCATACTATAATATAGCAGTGTGAAAAGACTAGAAGAGGCTATACCTTAGATGTATCTAAACATGTGGCACAATGTTGTGATTAATATATTAAAccagtagaagaaaaaaaaaagaatcccagacaaaaaaaaaaggtcagatTTCAAAGCATCTCAGCCTGACAATAAATTCTGTTGAtgtaaaactgtgtttttacaGCTGCACGACATAATCCTCATGAAGCATCCCTCCATCCTCAACCACCACAGAGCAAGACcaaccaaaacaacattttgtaatACACAGACATCTCTCTAACAACTTTTTAAAGAGCTTCAGTGAATGTGCAGGCAGATATCATACATGAAAGTGAGACCTATAGGACTTTTTGAACAGGCAGTcgtattcattttcttctggGTTTAGGGACactgttaaatgtaaaatgtctgtgtTCAAAGACATCTTACCTCATTGTTTGCATAACAGAGAGGGGTTTCATCTTGTTGTTACATGGCTTGGTTCATTACTGTAGTTTAATAATGTGAattaaattttttaaatttttattttttaaatccatagaCGTGTAATATGATTTGGCAGAATTCAGTATTTGATTaacaatgttgtgtgtgtgtttttttaagagaggagattgaaataattaaaattaacaaaatccaTACAAGCGTATGATTTTCACACATTCACAATCATACTTAAATGTTACACACAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009458 True 4795 mRNA 0.39 8 38357920 38367533

Neighbor

gene id symbol gene type direction distance location
AMCG00009455 NA coding downstream 38487 38317970 ~ 38319433 (-)
AMCG00009454 NA coding downstream 60086 38290897 ~ 38297834 (-)
AMCG00009453 rnf7 coding downstream 76390 38279251 ~ 38281530 (-)
AMCG00009452 NA coding downstream 86210 38266199 ~ 38271710 (-)
AMCG00009451 NA coding downstream 98104 38243207 ~ 38259816 (-)
AMCG00009460 NA coding upstream 11279 38378812 ~ 38414321 (-)
AMCG00009461 NA coding upstream 65042 38432575 ~ 38436609 (-)
AMCG00009459 NA coding upstream 106651 38474184 ~ 38481035 (-)
AMCG00009467 daw1 coding upstream 387317 38754850 ~ 38762930 (-)
AMCG00009471 NA coding upstream 408025 38775558 ~ 38810559 (-)
G57011 NA non-coding downstream 223954 38129295 ~ 38133966 (-)
G57018 LOC107653516,LOC107558362,LOC107706720,LOC107564248,LOC107705311,LOC107550449 non-coding downstream 228718 38128984 ~ 38129202 (-)
G57017 NA non-coding downstream 230242 38127468 ~ 38127678 (-)
G57016 NA non-coding downstream 230580 38125981 ~ 38127340 (-)
G57015 NA non-coding downstream 232557 38125149 ~ 38125363 (-)
G57143 LOC102787183,LOC106580884 non-coding upstream 133585 38501118 ~ 38503129 (-)
G57165 NA non-coding upstream 265579 38633112 ~ 38633397 (-)
G57194 NA non-coding upstream 404893 38772426 ~ 38773951 (-)
G57244 NA non-coding upstream 713888 39081421 ~ 39083424 (-)
G57351 NA non-coding upstream 1213078 39580611 ~ 39588074 (-)
AMCG00009437 NA other downstream 448952 37889502 ~ 37908968 (-)
AMCG00009417 NA other downstream 881885 37467254 ~ 37476035 (-)
AMCG00009408 NA other downstream 962932 37285576 ~ 37394988 (-)
AMCG00009409 selenot,LOC107681817,LOC106599070,LOC107708642 other downstream 1072555 37280548 ~ 37285365 (-)
G56800 NA other downstream 1137844 37215960 ~ 37220076 (-)
G57155 dner other upstream 212752 38580285 ~ 38582820 (-)
AMCG00009472 NA other upstream 460432 38827965 ~ 38837594 (-)
AMCG00009521 gigyf2,LOC107728389 other upstream 1753930 40121463 ~ 40157471 (-)
AMCG00009571 LOC107087052,LOC105890629 other upstream 3447026 41814559 ~ 41826934 (-)
AMCG00009582 NA other upstream 3673666 42041199 ~ 42056128 (-)

Expression


Co-expression Network