AMCG00009461


Basic Information

Item Value
gene id AMCG00009461
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38432575 ~ 38436609 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009461
ATGACAGTCATGTCCCCAGTGACGGAGGCCTTGATGGACAGCTCCCACTTCCAGTCAGTCCTCGGCTGCTTGAACGACCAGCGCACACAGGGTATGTTCTGCGACGTTACCATAGTAGTGGAAGACATCAAGTTCAAGGCCCACAAGAACGTGCTCGCCGCATCCAGCTTCTACTTCAAAAACGCCTTTTCCTCCCAAGAATTTTGGGTCTCGGGGCAAGTTCTGGAGCTGCCTGACTTCAAGTCAGAGGTCTTCGCCGGGATCCTGAATTTCATCTACAGCGCAAAGTTGGCCTCCACAGTTATAGAAGATGTGAAGTCGTTTGTGGCAGCTGGGAAGAAATTAGGCATCCCCTTTCTGGAGAACCTAGCTGAGCTTGAGCGGCGTTCCTCCAGTGTTTCACAGATACCATCTCAACCTCCTCCTTTCCAGACCGCGAGCCCAGACAGCACTCTTCTCCCCGCAGACTCACACTCCTTAAAAAGGGAGACCCCGAACAGCTCCTGCGATCCCAGGACTGAAGAGACAGAGTGCACAAGTGGGCCGAGGATCACCAATGCCTTTTCTATCATTGAGGCAGGACCTAACAATGACTTGTTTTCTCCCCTCGACCTTAGGGCAAGCACAAAGAGATCTCAGGAGCCGGAACAGTTGCCCGTTGGGTGTCCTGGCCAAAACGCTGCTGTGCCAGACAGCGAACAGACCCACACTTTGTCAGAGCACTCGTACGCAGTAAATCAGTCACGCAAAACCACAGAGCAGGATGAACTGGGAGCGAACAACGGAAGGAAAGAATCTGTAGAGCCCACAGATGCCCTTGCCAAACCACAGATGAGCCTGAGCTGCAGCCCACTGAAAAAACGCCACAAACTCAGGGCTAACCTGGTTAAAAACACTCTTGCGCAGAGCAGAGATGGCACACAGGCTCCGTTGAACACCACTACAGCCGCTACTGTCACCACATCATCAGAGAACCAGAATGATGCCGCAGGTAATGCAAGCGAGTCAAAAGCAGGGGAGAGGAATGATGCCAAGGAATACGGTACCTCAGCTCCACAGATGTCGACAGACCACAGTCTAGCCCCTTATCGATGTGAGTATTGCCCCGAGACCTTCAGCAACAAAGCGATACTTCACATACACACGCAGGTGCACAAAAGGAGGTTCGTCAGTCACCTGGCATGCAAGTTTTGCCGCAAGAAATTCATGCACCTAAAGCGACTGCGGAATCATGAGCAGATTTGCAATAAGGCCCTCACAGCTGCGGATGATCTGGAACCCGGGTGCGGAGAGCCGCAGACCGACACGAGCGCAGATCACATGTCCAGCCCACATGATAGTACGCTGCCCACCTGCCCACAAGACTTACCAGACAGCAGTCCCCACAGTGATTTTCCCATGGACACCAGTGAGACCTTGCCAGAGCCGGAGAGTGGGCAGAGGGTGGTTAGCGGGCAAAGGGTGTACCTGTGTGCCGTGTGCAAACGCTCATACGTGACTTTGTCCAGCTTGAGAAGACATGAGAATGTACACTCGTGGCAGAGGACTTATCCATGCCACTACTGCAATAAAGTCTTCGCGTTGGCAGAGTATCGGACCAAGCATGAGATATGGCACACGGGGGAGAGGCGCTACCAGTGTATTTTCTGTCTGGAGACGTTCATGACCTACTACATCCTAAAGAACCACCAGAAAGCCTTCCATGGAATTGACCCTCGCTTAGCTGTGAACAAGAAGTCAGCCAGTGGGGGCTTCAAAAGCAGCATTTACCCCATTAAGCTCTATAGGCTTCTGCCCATGAAGTTCAGGAAAAggcaatataaaacatacagccAGACTCTCTCGGAGAGCACGGACTGCAACAGCCAAGCTATTCCAGTTTCTCTAGCCCCCGGTCCCCAGAATGCCTTGAGTTGCAGTCCTACCTCAGCTGGCtttgaaaacaacattgttCTGAGTAGTGCAGATGGGAGCTGTATGGGACAGCCACTATTTTCAATGCCAGTGACATTTATGGCCACTCCAAAGGTCATTGCCTCTGTGACGCCCCACATTACATTTGATCAGCCATGTCACGCAGATGTAACTCAGCCACTGTCTTCTGAAGCAGACATGTGTCGGCAGAAAGAGCTGAAGTCCATCTCCCAGGACACAGAGGCACTCGCTGACCCACTTAGCAGCAACAATAAGGGTTCTTCCGTGATCAGCTATGGGTACACGCATCCAGTTCCTTCCGTTATAATGCAGAGCAGCAGGGTGTCATCTGTAATTGTCCATGGAAATGACATGGGCTCTATAGGGGTTCATAACAATGACAATGAAGGCAGTTGCCTGCCGTTCTTAGAAATTAACACTGATGGCTTTTCAGAGACGAAAGGCAACGATAAGGGTCACGCAAGGGCATCTTATAGACGAGAAGAATTATCACGTGTTCAAGGTACCGAGACGACGGGAAGCCAGGCATATCTGTCAGGTTACGGCTCCGCTTCTGACAGGGGTGCACGTATTCACTGTACTGGGAGCAAAACTGAAACGTACATTGCAAAGCCAGCCTGTCCGGGTCCTTCCGTCAACAACCAAGTCCCTCCCCTATGCCAGATCACAGTGAAAATCGGGGATGAGGCCATCATACGCAGAAGGATCAAAGGGTCCAAGCTCTTCCAAAGGAAAATTAAGAAGTGCAGGTGGAGTCCTGTAACAGAAGAGGCGGAGGGCACCGTTACAGAGCCCAAAGAAAGAAATACGAACAGCGTCTGTTTACGGTCCAGGACAGAGGTGACTTCGGTCATAGAGGCCGAGACGTACGATGATGTGCCCGATCGCGATACTGGTGACAAATTGTGGCGTCCTTATTACTCCTACAAACCCAAAAAGAAGCCGaaggggggaaacaaaatgaGATCCAAACACAGGAGGAAGGGCAAGAGGGGCAGGGCTCCCGGGAAGCCCTTAAGATCCAACGAGATAGCAAAAGAGCCCGAATTTACCGAGGACTACCTAAGCACAAGTTACAGCATGCATGGTAAAGTCATATCGGACGTGACCAGGATTGGAAGGCAACTCAGGAAGAGTGTCCACAAGGAGCCTTCTTCCTGTGACATCTGCCAAAGTCTCTTCTCGAGCTCATCGGCACTCAAGATGCACATGATCAGCTGTCATCCCGATGGGCGGCCCAGTGTCTGCAAAACGTGTGGCAAACAATCCCCGCCCAACGAGGTAACGAACGCAAACTACCCCTTCCCCGACGACGAGAGAGAGTTTGTCTGCAAGAACTGCATCGAGGACGGCTCTTGCTTTAACAACTCCTTTACCAGCCACAAGACGGAGAAACGCTATCGTTGCTCCTTCTGCCCCCAGCGCTTCTTGTACCTGGCCACTAAGAAGAGTCATGAAAAGAAGCACCTGGAGAAATACGGGAAGGGCTACAACTGTTACTACTGCCAGAAGGTTTGCAAATCATCAGCCGCCCTGGCAATCCATCAAAAGAAGCACGTCATTAAAACGGAAGACGACAACGACGGCGACGACAAGGAATCAGCCAGGCTTCTGTGTGGCATTTCTAACGTTACGGGAGAACTGGACACCGGTGAGTCAGAGCACACCGACGCCGACACAGCTGTCACCACCAAACTCGAAGATCagagcgaaatcagcagcagcaACGGGTACTTTCAGGACTTCAAGGGGCCTGATATCAAGACACTGATATCATCGCCACACCGAGACACACTGTCCTTTCCAGGGTCTCCCACACAGCTGCCACCAGCCAAAGCCTGGAACAGCTACCCTTCCTATCAAGAGCGAATGAGCGGTCAGTGCCCTGAAAGCTGTGCAGAGCAGAGACAAAAGTACAGCTTCATGAGCGGGCAGGTGTACTCTGACTATTGCCTTCCCCCTGTCTTATGTCAGAACAATGAACACAACTCAGAGCAGTTTTCACCTTTACACGGGACGACAAATATACTTTCGGGCAGCACACAAGCAGACTTTCCGAAGGCAGAGTACAAGCAACCATGCAAGGAGGAAACGTCGTAA

Function

GO: NA

KEGG:

id description
K10510 ZBTB38; zinc finger and BTB domain-containing protein 38

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009461 True 4035 mRNA 0.52 1 38432575 38436609

Neighbor

gene id symbol gene type direction distance location
AMCG00009460 NA coding downstream 18254 38378812 ~ 38414321 (-)
AMCG00009458 NA coding downstream 65042 38357920 ~ 38367533 (-)
AMCG00009455 NA coding downstream 113142 38317970 ~ 38319433 (-)
AMCG00009454 NA coding downstream 134741 38290897 ~ 38297834 (-)
AMCG00009453 rnf7 coding downstream 151045 38279251 ~ 38281530 (-)
AMCG00009459 NA coding upstream 37575 38474184 ~ 38481035 (-)
AMCG00009467 daw1 coding upstream 318241 38754850 ~ 38762930 (-)
AMCG00009471 NA coding upstream 338949 38775558 ~ 38810559 (-)
AMCG00009470 NA coding upstream 380586 38817195 ~ 38820080 (-)
AMCG00009475 NA coding upstream 472413 38909022 ~ 38935195 (-)
G57011 NA non-coding downstream 298609 38129295 ~ 38133966 (-)
G57018 LOC107653516,LOC107558362,LOC107706720,LOC107564248,LOC107705311,LOC107550449 non-coding downstream 303373 38128984 ~ 38129202 (-)
G57017 NA non-coding downstream 304897 38127468 ~ 38127678 (-)
G57016 NA non-coding downstream 305235 38125981 ~ 38127340 (-)
G57015 NA non-coding downstream 307212 38125149 ~ 38125363 (-)
G57143 LOC102787183,LOC106580884 non-coding upstream 64509 38501118 ~ 38503129 (-)
G57165 NA non-coding upstream 196503 38633112 ~ 38633397 (-)
G57194 NA non-coding upstream 335817 38772426 ~ 38773951 (-)
G57244 NA non-coding upstream 644812 39081421 ~ 39083424 (-)
G57351 NA non-coding upstream 1144002 39580611 ~ 39588074 (-)
AMCG00009437 NA other downstream 523607 37889502 ~ 37908968 (-)
AMCG00009417 NA other downstream 956540 37467254 ~ 37476035 (-)
AMCG00009408 NA other downstream 1037587 37285576 ~ 37394988 (-)
AMCG00009409 selenot,LOC107681817,LOC106599070,LOC107708642 other downstream 1147210 37280548 ~ 37285365 (-)
G56800 NA other downstream 1212499 37215960 ~ 37220076 (-)
G57155 dner other upstream 143676 38580285 ~ 38582820 (-)
AMCG00009472 NA other upstream 391356 38827965 ~ 38837594 (-)
AMCG00009521 gigyf2,LOC107728389 other upstream 1684854 40121463 ~ 40157471 (-)
AMCG00009571 LOC107087052,LOC105890629 other upstream 3377950 41814559 ~ 41826934 (-)
AMCG00009582 NA other upstream 3604590 42041199 ~ 42056128 (-)

Expression


Co-expression Network