AMCG00009465


Basic Information

Item Value
gene id AMCG00009465
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38740320 ~ 38751025 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009465
cAGATCTGCTTTGTAAATCTTGACAAAGACAACGAGGATTACCGCGATGATAAGTGTATAAAGAAGCTGGCTGccgtctctcctgctctccccaAGCTGATCGAGTCCCTAAATGTGCAACAGCCCAGGGAGAACGAGATCTTTCTCCTCAGCGGATTGGATTCCTCTGAACCATGCCAGCAGGACTTATACAATCAACAGaGCTTGCGAGCCGCGGATGTTTGCCTAATCCAGTGCGCTCGGGGAAACAAGCACACTCATCCCAGCTGCATCATTTTCGAAATCAACAAGTTCCTCATTGGGCTCGAGTCTGGTCAGGAGAGACAGTTGCAAACAGGCCGATACGGATACCAAAAAGCTGAGGACGACACCAACCGGTCCGTCTCTTCCATAGAGGAGGACTTTCTCACAGCATCTGAACATCTGGAGGACAGTGAAGAGGATGCCTACAGAAATGATTTTGAGAACAATGACTTTATGGATCTCTTCACACACGACAAAAACATAGGAGGAATGAGAATCGACAGGCTGAGGCATAAAAAAGGACCCAGCGGCGAATGGGACACAGCCGTGGAGggaactgtgtgtgtgacagcCGATAAACCCATGAAGCCGCCTCACAGTCGCTCTCCACTTCAAAATGCAGCAGAGTTCCAGACAGACTCAAAGAAATCCCATCATAGCACCAGCCAGGGATTTGCTTTATCAAAAAAAGCCACACAAGATGGGCACAGTGCAGTCCCAAAACAAAGCAGCAAAGCACAATCCCGCTCACAGAGTACACAAGAATCTGCAGGCCATTACGCCACAAACCTGGCAGAATCAGTGCTTCAAGATGCCTTCATTAAGCTATCCCAGGACGAGCCTTATTTCACAACAGAGGCAGCTTTAAGTGTCTCGGCGGGGAGCCACATAGCCCTCAGCTCCAAAACAAATGAGCCGAAACCCACTCGGGGATGCTCGTTTGAGCTACCCAAGATCGTTATTGTGCAAAGTCCAGATAATTGTGAAAGTGTGACAGAATGGCCAGGGACTCCgtcttcacacacaaacacctggGAGGAAAACGACAGCCTCAAAGACACTTGCGATCACCCCCTGGAACACGGCTCCGAGCCTTCCCACTTCCTGCCCAAACACACGCCTAAACCTGTGGAAGTAGCTTTAGCATGTGCAGCCAGGCTCTTGTCAGCGGCAGAAGCTTCGGCGGCCATCACACTTCACTGTAGCGTGACTGTGGGCTCCAGAATCGACCCGTTTACTACCAACATTGCAGAGGTCCTGCTGAATGAAGCATCCTCGATTTTAACCCAGCCAGAAAATTATGGGAGCATTGGAGACTTCCTGGAatccacacaaaataaaattgtggaAAGCATCACTAAACCAACAAGCTGTCATTTAGATGAGATTGAGGTGGACGCTTTTGCTAACATGCTTTCAGATGCCATCTTCAAACACTCGTTAGAGAgagcaatgaaaagaaaagaactgGAGAGCCcaagcaaatacatttctgacatACAGGACTTTGTTTTAGAGAGTGCAAACAACTTGCTGTTGGATGTGCTACTTATCACATCTAAGAAAATCAGTGATATTTCCAGGCACAGTAAGGTGTCCTCAGACATGGCTGAAGTTGATATCGGCTCCAAAGATTATGAAACAACCCTCAAGAAAAGCAGGCAGCCATTAAACCAGTTATTAAGTTTGATTGGATCAAGCCAGTCTGATAATATAGAAAACCAAACGAATCTGCTTCACAGCAAAGACAAGTTGTCAAACTTTACCGGGATCAAGGAAGAAAAAGTGGTCCAAGAAGAGCAAGAAACCGAACCAGCAAGCTCATGCTGTTTGGCACAAATTAAAGATCAGCGGGGAGCCAGTCTGGTCCATGTTGTACCGTTGGTCCAAGACTGTACCACCCTTCAGTATCAAATAAGTAAAAGTACCACCAAAGATCTGAAGATCACTCCAGAAACAGACAGAACAATGTCAGTGTCTGATTCAAAGCAGCCTTTCCAAGAGATACTCACCCAGAACATcatcacagaaaaacacagaagtaCTGTGCTGATGGACAATGACACTAAATTGTCCACAACATCCTCCTGGCAGCCCTTACTATCTCCCTTACCAAAACCAGTACCAGAAAGCAAATCCTCAGTTTCAGGTTTTGCAGACGATCTCGCTGCAACCGTAGTCTCGATGGCCACAGAGATGGCTGCGATCTGCCTGGAGAACTCCAACGGGAAGCAGCCATGGTTCTGCGCCTGGAAAGGGGGACTGGAGAACCCTGAGAACTACCTGATGCCCTGCAGGACAGTCAAAAGGAAAAAGGAGAGCCAGAGCAATGCGGCCGTCACGAAGAAGCACAGGCCACCCCGGctcagtgaaattaaaaagaaaaccgaGGAGCAGCCGGAGCTGATGGAGCGACTGATGAACAGGGTGGTGGACGAATCCATGAACTTAGACGAGCCCACGGACCCATTCACCTTGTTTGCTACAGAGGTGACCGCGAAGATCATGAACTGCCCCGAGCTGAATGTGGTGGACACTTCGAAACAGGGTCACCCGAGGACCCGGCTGCAGTGCGACAGGTGGAGCAGGGGGAAGGCATCAAGCTACGAAAGCATCCCAGAGGAAGATGCCGATTCCTCCCATCTGATCAACATGCTGGGCCCGGGGACCAGGCTCGGGCAGAACATGAGCCGGGGCAGTTCGATATCGAAGCAGTCGAGCTGTGAAAGTATCACAGACGAATTCTCCAGGTTCATGGTGAATCAGATGGAGAACGAGGGCAGGGGCTTCGACTTGCTGCTCGACTATTACGCCGGTAAAAACGCCAACAATATCTTGAGTTCGGCGATGCAGCAGGTCACCAAAAAGAACGGGCACCTCAACGTGAGGTCAACGTGCCTGTCCAAGCAGTCGAGCACGGAGAGCATCACTGAGGAGTTTTACAGATTCATGCTCAAAGAAATGGACAAGGAGAATAAAGATTACAATGCGCTGAAAACCAAAGAGTGGAGTAACAGCTTGTTGCCTCCGACTCCAAGAACACCTTTTTGTTTCAGGCAGTCGTCAATGCCGGACAGAAGATCATCTGACTCCAGGTTGACAGTGAACTCCCCTGTGAAAGCCAATTCTTTTGACGGCTTCGCCAGAAACATACATGGAGATACTCTCAGCATATATTCCGGCAACACAGTGTCAGCCACGGGCCTTTGCAAGTCGGATTCCTGTTTGTATCAAAGGGGACACACCGACCAGATCACAGACATGCTCATTCACGAGACCTGGTCCAGTTCCATCGAGTCTCTCATGCGGAAGAATAAGATTATCGTGGACGATGACGACAGCATGGATCTGGACCTGTCAATGAATGATTCCCAGCCTCACGTTGAGCTGTTCGCAAACAGACTGGCTGCCGACATTGTCGAGAGCGGGAGGTCTTTACTCGGGGGTCAGCAGGAGTCTGTGGACAGCCGACCGCTCACCCCAGTggcagagaggaggagatgTTTCAAAAGCAAGACTGAGTCACGTTTCAGGCAGCCGGCGTCTGACCGGATCAAATCGACCCAGGAAAGAAAGCCTTCTGTAGCCAACGAGGCTGTGTGCATTGCCTCCCTTCCTCAATGCCCGAGGGAAGTGCCTTTGATTCAGATAGAGGGAGATCAAAGAGAGGAGTTCAGTCAAGACACAGAAAGCCGTGACTCTCTTGTAGCCTCCCCTGGGACACCGGGCAGAGAGTGTCACCCTCGGGAGAAGCCCAAAGAAATGAGCACAGAGACGACCTCTTTTAATCATAGCAGtgaaataccagagGGAAATGCTCTGCTGAAAGACAATCAGGAAAATGTGGATGAAATGACCTCTGGGCTCTCAATAGGAGCCAGCAGCAGCCACAGGGAGCTTCTAGTAATGAACTTTGACCTGGAGCCCGATTGCGTGGACTCCGAATTACGGGTGACTCTGCAGTGGATTGCCGCCTCTGAGCTCGGAGTCCCAACCATCTACTTCAGGAAATCTCAAGAGAAGAGGATAGACAAGtttctgGAAATAGTGCGATTTGTTCATCAGAAAGCCTGGAATGTCGGAGACCTCTTCCATGCCGTTGTGCAGTATTGTAAACTACAAGATGAAAATGGCGATTCTTTGACGAGTCTATATGACTGGCTTTTGGAGACTTGTTAAGGTAAACAGATTACCGAGAATGTTAAAACACACGTTGCAGGATCAGTTTAATGTTCAAACAGAAATTGTGACCATATAGTCTTTGTGGGAGTTGTTGTTGCAAGGTACATACATGTTAGCGTATGTTAACTGCGTTATTGGTCTTATTAGAATACCTAGTCTAAAGAATGCCATTTGAAACAGATTGTCATATTTAGCGCTAAAATTATTGTGAAGCCGACGATGCAATTACACGTTGAATGATGATGCACCCTTTAAGATTAGCATGTTGCTCATTCTGAAATGCACGGAAGAGTTTGATcaacagggagagagaagaaatggATAGCCTTCAAAATTCAAAGCCATTGAAATCCTCCTAAAatcaaagcttttaaaaatattttcattgttattagACATGTTAAAGGGTTTGATTAAACTTATTTCAACATGCTAAAATTCCAAGATGCTATTTTCCAATTTGAAAGAACAATCAACCGAAGAATCTTGTACTCACGTACCGAAATGAGGCATACCTTATATCTTGCACAATTATCCATTTGAAAATCGACTATTCATTTACACAACCATGTGACGAGGGTACGAGAGATGTATCTGGCATTTATTCCCGCTCCTCAATGTACAAAACCTTTTTgtaacttcaaaatgtattcataagtAAGCTGGTTATTTGTGCaccatattaatttaaatgatttattttagatatctgtaaatattgtatattttgggTAAATGCACCTTGAGTACAATATGATGCTCTTAATAAATGACCGAGGTAAAATGGTGTggaatataatttgtaatataaagaGCAATTTCTATGTGAATCTGGTTGTAAGTTTTTTTGCTGTAATAGTCCAGTCATGTTTTATCAGCATTCAAAGCACACACAGAGTGTCAAAGATGTCACTGTATTACtgaatgtaacattttggaattaataaatatctatgtaatgTGA

Function

GO:

id name namespace
GO:0001917 photoreceptor inner segment cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009465 True 5170 mRNA 0.46 8 38740320 38751025

Neighbor

gene id symbol gene type direction distance location
AMCG00009468 NA coding upstream 10934 38655785 ~ 38729386 (+)
AMCG00009464 pid1 coding upstream 124482 38614820 ~ 38615838 (+)
AMCG00009463 dner coding upstream 156889 38541989 ~ 38583431 (+)
AMCG00009462 trip12 coding upstream 229298 38481113 ~ 38511022 (+)
AMCG00009456 NA coding upstream 266281 38467267 ~ 38474039 (+)
AMCG00009466 NA coding downstream 12746 38763771 ~ 38775610 (+)
AMCG00009469 NA coding downstream 63010 38814035 ~ 38817666 (+)
AMCG00009473 NA coding downstream 90931 38841956 ~ 38843311 (+)
AMCG00009474 NA coding downstream 118462 38869487 ~ 38900537 (+)
AMCG00009477 NA coding downstream 382829 39133854 ~ 39155094 (+)
G57164 NA non-coding upstream 106969 38633097 ~ 38633351 (+)
G57161 NA non-coding upstream 112185 38627919 ~ 38628135 (+)
G57036 NA non-coding upstream 459841 38202794 ~ 38280479 (+)
G56995 NA non-coding upstream 606354 38130082 ~ 38133966 (+)
G56982 NA non-coding upstream 672167 38063790 ~ 38068153 (+)
G57175 NA non-coding downstream 6355 38757380 ~ 38834945 (+)
G57286 NA non-coding downstream 552312 39303337 ~ 39306230 (+)
G57287 NA non-coding downstream 555463 39306488 ~ 39306774 (+)
G57329 NA non-coding downstream 708373 39459398 ~ 39459676 (+)
G57378 NA non-coding downstream 1055558 39806583 ~ 39806928 (+)
G57105 NA other upstream 282728 38442255 ~ 38457592 (+)
AMCG00009428 NA other upstream 1123624 37608305 ~ 37616696 (+)
AMCG00009429 NA other upstream 1135196 37530822 ~ 37605124 (+)
AMCG00009415 wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084 other upstream 1276815 37422017 ~ 37463505 (+)
AMCG00009405 pfn2,LOC105899220,LOC106598797,LOC105028925 other upstream 1372649 37348108 ~ 37367671 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other downstream 683875 39434900 ~ 39437017 (+)
G57430 NA other downstream 1196981 39948006 ~ 39949200 (+)
AMCG00009516 NA other downstream 1335449 40086474 ~ 40105052 (+)
G57604 NA other downstream 2239777 40990802 ~ 40994659 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other downstream 2845204 41596229 ~ 41599124 (+)

Expression


Co-expression Network