AMCG00009485


Basic Information

Item Value
gene id AMCG00009485
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39305973 ~ 39308183 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009485
ATGGACCACCTGGGCCATCTGGCCACGATGGCCAACCTGGCAGACCCGGACAGAAAGGTGAAGTGGGCTCCTATGGTTTTCAAGGACCTCCAGGGGCCCAAGGGGATCCTGGACCTCCTGGAGACCCCGGCTTCTCCGGAGAGGAGGGGAGTCGTGGTGTGGAAGGTATTTGACAAGTATCTCAGCTTAGTTCATCGTCCTCCCGGGCCAAGGGGCCTCCCAGGGCTGCCGTGCCCAAGGCAGTATAGTTCTGGCTTCTTACTAGTTATGCACAGCCAATCGGAAAGCATCCCCACGTGTCCTCAAGATACGGGCAAATTGTGGGAAGGCTACAGTTTATTGTACCTGGAAGGACAAGAAAAGGCCCATAACCAGGATCTCGGTCTCGCAGGGTCTTGTTTGCCAATGTTCAGCACGATGCCCTTCACGTTCTGCAACATGAACGGAGTGTGTAACTACGCCAGTCGAAATGATAAATCCTACTGGCTGTCCACCACGGCTCCCATTCCCATGATGCCGGTGTCGGGCGAGGAGATTCAGCGCTACATCAGCAGATGCGTGGTGTGCGACGCGTCCGCTGTCGCAGTGGCATTCCACAGCCAGGACTCGATCATCCCCATGTGCCCCAGAGGGTGGCGCAGCCTATGGATGGGCTACTCCTTCTTAATGCACACCGCCGCAGGGGACGAGGGAGGGGGGCAGTCCCTGACGTCGCCGGGGAGCTGCCTGCAGGACTTCCGGACCACACCGTTCATCGAATGCCAAGGCGCCCAGGGAACCTGCCACTACTTTAATAACAAGTACAGCTTCTGGCTCACCGGGATGAAGACACACGAGCAGTTCAGAGACACTCCAGCAGAGACGCTCAAAGAGGAGCATCAGAAGAGGCAGAGGGTCAGCAGATGCCATGTGTGTATGAAGGAGTGA

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009485 True 927 mRNA 0.57 5 39305973 39308183

Neighbor

gene id symbol gene type direction distance location
AMCG00009478 LOC107577679 coding downstream 34490 39266196 ~ 39271483 (-)
AMCG00009476 NA coding downstream 292602 39012842 ~ 39013371 (-)
AMCG00009475 NA coding downstream 370778 38909022 ~ 38935195 (-)
AMCG00009470 NA coding downstream 485893 38817195 ~ 38820080 (-)
AMCG00009471 NA coding downstream 495414 38775558 ~ 38810559 (-)
AMCG00009487 NA coding upstream 5104 39313287 ~ 39398165 (-)
AMCG00009486 NA coding upstream 141534 39449717 ~ 39469293 (-)
AMCG00009491 NA coding upstream 208264 39516447 ~ 39520080 (-)
AMCG00009494 NA coding upstream 281685 39589868 ~ 39614413 (-)
AMCG00009492 fgf12a,fgf12,LOC107572463,LOC107704679 coding upstream 338643 39646826 ~ 39654320 (-)
G57244 NA non-coding downstream 222549 39081421 ~ 39083424 (-)
G57194 NA non-coding downstream 532022 38772426 ~ 38773951 (-)
G57165 NA non-coding downstream 672576 38633112 ~ 38633397 (-)
G57143 LOC102787183,LOC106580884 non-coding downstream 802844 38501118 ~ 38503129 (-)
G57011 NA non-coding downstream 1172007 38129295 ~ 38133966 (-)
G57351 NA non-coding upstream 272428 39580611 ~ 39588074 (-)
G57354 NA non-coding upstream 280503 39588686 ~ 39588911 (-)
G57379 NA non-coding upstream 498452 39806635 ~ 39806927 (-)
G57400 NA non-coding upstream 565788 39873971 ~ 39874229 (-)
G57524 NA non-coding upstream 851214 40159397 ~ 40159608 (-)
AMCG00009472 NA other downstream 468379 38827965 ~ 38837594 (-)
G57155 dner other downstream 723153 38580285 ~ 38582820 (-)
AMCG00009437 NA other downstream 1397005 37889502 ~ 37908968 (-)
AMCG00009417 NA other downstream 1829938 37467254 ~ 37476035 (-)
AMCG00009408 NA other downstream 1910985 37285576 ~ 37394988 (-)
AMCG00009521 gigyf2,LOC107728389 other upstream 813280 40121463 ~ 40157471 (-)
AMCG00009571 LOC107087052,LOC105890629 other upstream 2506376 41814559 ~ 41826934 (-)
AMCG00009582 NA other upstream 2733016 42041199 ~ 42056128 (-)
G58025 NA other upstream 3340667 42648850 ~ 42673707 (-)
G58333 NA other upstream 4174238 43482421 ~ 43945297 (-)

Expression


Co-expression Network