AMCG00009492 (fgf12a,fgf12,LOC107572463,LOC107704679)


Basic Information

Item Value
gene id AMCG00009492
gene name fgf12a,fgf12,LOC107572463,LOC107704679
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39646826 ~ 39654320 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009492
GATCACAAACACCCATTAAAAATTAAAGCTGAACGCTTGAACAGTGGCACAATAAAGGGTGTTGATTTTGTTGTCACCTtcaccctgtctctgtctgcttcCAACAGGAAATGTTCACGCCGGAGTGTAAATTTAAGGAATCGGTGTTTGAGAACTATTACGTCATCTACTCCTCCACACTGTATCGACAACAGGAGTCTGGCCGGGCTTGGTTCCTGGGTCTCAACAAGGAAGGGCAGATCATGAAAGGAAACCGTGTGAAGAAAACCAAACCTTCATCACATTTTGTACCAAAACCTATTGAAGTTTGCATGTACAGAGAGCCATCACTGCATGAAATCGAAGAGAAACAACGTTCAAGAAAAAGTTCAGGGACCCTGACTATGAACGGAGGCAAAGTTGTGAACCAGGACTCCACATAGCAGGATGCGAATCCCCCCCCAACACGGTGGAATGGACAGGCAGCAATCATCTCCTGCTTTGGATTCCGAACTCGTTCTCAATTTCTTACACATTCTTcaactaaagaaaaagaagaaaagagaaaaaaaaaacgaaaaaaaaactgaattcttGCCTGTGAtgttttagagaaaaaaaaacgacagaaaaatattttaaatcaggactcgaatatacattttatgcaaAAGTCTGCTGTGTGACAACAAGGAAGTTCATCTCTTCATTAcactaataaaatatttcaaagttaCACTACAGAATGTAAGCTTTACCTAATGGGAGCCATACTAgaatttcaattattattattatgattatgattattattatttgcacttCAGATATGATATTTTGAACATCTGATTTGAATCTGCACATCAGCACCGTTCTGAACACGTCAATGTCTGTAAGAATCacctgttttgtttaaaatgagttTGTGGCATTTGTCCTTCTGGTTTGCTATGGGTCGGCTTGGTCGAGTTTTAACAGTTAGTTACCTTAGAAGTAGGCAGAAACTAGAGGGATCTTCATTCCCAACAACTCGCAAAGATCCAGCATGTAACAATTTCAGCAATACTAGCTGTCAAAACTAAAGTTGTAATGTCTTACGGAAATACTCAAAGTTAACAAACACATCTGTTTAGCAATGTGGAGAGGTTAGGCAGCACAAGGGGTAGCACGccatttttgaaagctgttttcCGCAGGATAGAATTGAAATGAGTGTCTCCTTGTGGATTTGCTGATCTTTGGAAACTCAGGAAGAAATGTACTCACGCCAGGATCACGATAGCCATAAAAATGCTTCCTTTGTGCAAACTGCGAAaccattgacattttaaatgctcGTGGTAACAATCAGTGAGCATACAGCTATGGCTCGGGGGGCTACTAGGCCGTCTCCCATATAGTCCTCGGAGATTCAACATATCTCAAGTTACCTTCTGAGCGGAGATCAATCCTCCACTCTCGAGATACTGTAATATTCAAATGTCTTCCATTGGGGAAAGGAAATCAGAGCGGGGATTGTATTTTCCTGTTGGATAGAAAGCCATGTCTGTATCAAACAATCTCTGTATGTCATGCTTGGAGCGTGGAGCAAAACCCCGTAAGAAATGTCCAATAGTTCAGCAGAGGAAAGATACTACAGCAGCTAGTGAGGTGAAATCGCAGGGAATGTGTGCATTTGCCTGAGACTAGATATGCCCGAGACCCTTCGCTAGTTCCACTGAGTTTTTGTCACTGTCAGGTAAGAAGAGTGTTCCCACTTGGACAAGCCTGGATATTCGATTTGTTTTTGCTAACTTTTGcacctttaaaaagaaaaaataaagatatgagTAATCACTTTCATCAATGCATTATGAAAATAAGCAGCAGGATGAAAACTAcataatcattacaaattataataaagtatGGTACCGAAAATTGCAA

Function

symbol description
fgf12a Predicted to enable sodium channel regulator activity. Predicted to be involved in regulation of voltage-gated sodium channel activity. Predicted to act upstream of or within fibroblast growth factor receptor signaling pathway. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 47. Orthologous to human FGF12 (fibroblast growth factor 12).
fgf12 Enables heparin binding activity. Involved in regulation of neuronal action potential and regulation of voltage-gated sodium channel activity. Acts upstream of or within JNK cascade. Located in nucleus. Implicated in developmental and epileptic encephalopathy 47.

NR:

description
fibroblast growth factor 12 isoform X1

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0008083 growth factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009492 True 1905 mRNA 0.40 2 39646826 39654320

Neighbor

gene id symbol gene type direction distance location
AMCG00009494 NA coding downstream 32413 39589868 ~ 39614413 (-)
AMCG00009491 NA coding downstream 126746 39516447 ~ 39520080 (-)
AMCG00009486 NA coding downstream 177533 39449717 ~ 39469293 (-)
AMCG00009487 NA coding downstream 248661 39313287 ~ 39398165 (-)
AMCG00009485 NA coding downstream 338643 39305973 ~ 39308183 (-)
AMCG00009493 fgf12,fgf12a,LOC104939444,LOC102791340,LOC107384013,LOC100711708 coding upstream 25598 39679918 ~ 39692549 (-)
AMCG00009502 mb21d2,LOC106612350 coding upstream 113340 39767660 ~ 39768919 (-)
AMCG00009501 NA coding upstream 165413 39819733 ~ 39827370 (-)
AMCG00009500 NA coding upstream 221739 39876059 ~ 39882235 (-)
AMCG00009507 NA coding upstream 286892 39941212 ~ 39951534 (-)
G57354 NA non-coding downstream 57915 39588686 ~ 39588911 (-)
G57351 NA non-coding downstream 58752 39580611 ~ 39588074 (-)
G57244 NA non-coding downstream 563402 39081421 ~ 39083424 (-)
G57194 NA non-coding downstream 872875 38772426 ~ 38773951 (-)
G57165 NA non-coding downstream 1013429 38633112 ~ 38633397 (-)
G57379 NA non-coding upstream 152315 39806635 ~ 39806927 (-)
G57400 NA non-coding upstream 219651 39873971 ~ 39874229 (-)
G57524 NA non-coding upstream 505077 40159397 ~ 40159608 (-)
G57545 NA non-coding upstream 685027 40339347 ~ 40343479 (-)
G57596 NA non-coding upstream 1067111 40721431 ~ 40777084 (-)
AMCG00009472 NA other downstream 809232 38827965 ~ 38837594 (-)
G57155 dner other downstream 1064006 38580285 ~ 38582820 (-)
AMCG00009437 NA other downstream 1737858 37889502 ~ 37908968 (-)
AMCG00009417 NA other downstream 2170791 37467254 ~ 37476035 (-)
AMCG00009408 NA other downstream 2251838 37285576 ~ 37394988 (-)
AMCG00009521 gigyf2,LOC107728389 other upstream 467143 40121463 ~ 40157471 (-)
AMCG00009571 LOC107087052,LOC105890629 other upstream 2160239 41814559 ~ 41826934 (-)
AMCG00009582 NA other upstream 2386879 42041199 ~ 42056128 (-)
G58025 NA other upstream 2994530 42648850 ~ 42673707 (-)
G58333 NA other upstream 3828101 43482421 ~ 43945297 (-)

Expression


Co-expression Network