AMCG00009493 (fgf12,fgf12a,LOC104939444,LOC102791340,LOC107384013,LOC100711708)


Basic Information

Item Value
gene id AMCG00009493
gene name fgf12,fgf12a,LOC104939444,LOC102791340,LOC107384013,LOC100711708
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39679918 ~ 39692549 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009493
ATGGCAGCGGCAATAGCCAGCTCCCTGATCCGGCAGAAGCGGCAGGCTAGGGAGTCCAACAGCGACCGGGTGTCCACCTCTAAACGGCGCACAAGCCCCAGCAAAGACGGGCGCTCCCTGTGCGAGAGGCATGTTTTAGGGGTTTTCAGCAAAGTGCGTTTCTGCAGCGGCAAGAAAAGACCAGTCCGCCGGAGACCAGaACCCCAGCTCAAAGGTATTGTCACTCGGTTGTTCAGTCAGCAGGGATTTTTCCTGCAGATGCAACCGGATGGCACGATCGACGGGAACAAAGATGAAAACAGCGACTACACCCTCTTTAATCTAATCCCTGTTGGACTGCGTGTGGTAGCGATCCAGGGTGTGAAAGCTGGTCTATACGTGGCGATGAACGGAGAAGGATTCCTCTACAGCTCA

Function

symbol description
fgf12a Predicted to enable sodium channel regulator activity. Predicted to be involved in regulation of voltage-gated sodium channel activity. Predicted to act upstream of or within fibroblast growth factor receptor signaling pathway. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 47. Orthologous to human FGF12 (fibroblast growth factor 12).
fgf12 Enables heparin binding activity. Involved in regulation of neuronal action potential and regulation of voltage-gated sodium channel activity. Acts upstream of or within JNK cascade. Located in nucleus. Implicated in developmental and epileptic encephalopathy 47.

NR:

description
fibroblast growth factor 12 isoform X2

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K22413 FGF11_12_13, FHF3_1_2; fibroblast growth factor 11/12/13

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009493 True 414 mRNA 0.55 3 39679918 39692549

Neighbor

gene id symbol gene type direction distance location
AMCG00009492 fgf12a,fgf12,LOC107572463,LOC107704679 coding downstream 25598 39646826 ~ 39654320 (-)
AMCG00009494 NA coding downstream 65505 39589868 ~ 39614413 (-)
AMCG00009491 NA coding downstream 159838 39516447 ~ 39520080 (-)
AMCG00009486 NA coding downstream 210625 39449717 ~ 39469293 (-)
AMCG00009487 NA coding downstream 281753 39313287 ~ 39398165 (-)
AMCG00009502 mb21d2,LOC106612350 coding upstream 75111 39767660 ~ 39768919 (-)
AMCG00009501 NA coding upstream 127184 39819733 ~ 39827370 (-)
AMCG00009500 NA coding upstream 183510 39876059 ~ 39882235 (-)
AMCG00009507 NA coding upstream 248663 39941212 ~ 39951534 (-)
AMCG00009508 NA coding upstream 260868 39953417 ~ 39965123 (-)
G57354 NA non-coding downstream 91007 39588686 ~ 39588911 (-)
G57351 NA non-coding downstream 91844 39580611 ~ 39588074 (-)
G57244 NA non-coding downstream 596494 39081421 ~ 39083424 (-)
G57194 NA non-coding downstream 905967 38772426 ~ 38773951 (-)
G57165 NA non-coding downstream 1046521 38633112 ~ 38633397 (-)
G57379 NA non-coding upstream 114086 39806635 ~ 39806927 (-)
G57400 NA non-coding upstream 181422 39873971 ~ 39874229 (-)
G57524 NA non-coding upstream 466848 40159397 ~ 40159608 (-)
G57545 NA non-coding upstream 646798 40339347 ~ 40343479 (-)
G57596 NA non-coding upstream 1028882 40721431 ~ 40777084 (-)
AMCG00009472 NA other downstream 842324 38827965 ~ 38837594 (-)
G57155 dner other downstream 1097098 38580285 ~ 38582820 (-)
AMCG00009437 NA other downstream 1770950 37889502 ~ 37908968 (-)
AMCG00009417 NA other downstream 2203883 37467254 ~ 37476035 (-)
AMCG00009408 NA other downstream 2284930 37285576 ~ 37394988 (-)
AMCG00009521 gigyf2,LOC107728389 other upstream 428914 40121463 ~ 40157471 (-)
AMCG00009571 LOC107087052,LOC105890629 other upstream 2122010 41814559 ~ 41826934 (-)
AMCG00009582 NA other upstream 2348650 42041199 ~ 42056128 (-)
G58025 NA other upstream 2956301 42648850 ~ 42673707 (-)
G58333 NA other upstream 3789872 43482421 ~ 43945297 (-)

Expression


Co-expression Network