AMCG00009495 (atg16l1,LOC107689588,LOC107551872)


Basic Information

Item Value
gene id AMCG00009495
gene name atg16l1,LOC107689588,LOC107551872
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39845409 ~ 39863181 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009495
TGCTGGAGCCCATGGTGTCTACCTTGCAGATCCGGCGAGACTCCTGCAAGAGCCAAGATGGCTGAAGAAGGAGGGAAGCTTTAATAACATAAATCACCGTcggtatatattatttaacccAGCTTTGCTGCGACACTGCATTGGGGAGGCGGTAGTGGTTTCGCGGGGCTGCCGGGCCTCCTGTGACGGTGACAATGTCGGGGGCCGGCTGTCGGGCAGAATGCACCTGGAAGAGACACATTGCGGAGCAGCTGAAGCAGAGAGACCGCGTCCAGAGGCAGGCCTTCGAGGAGATCATTCAGCAATATAACAGACTGCTGGAGAAGGCAGACTTGCAAGCGGTTCTCTCCGAAAGGCTCCAAACGGAGAGAAATGACATCCAGAACAGGCATGACCTGAGCCCCGGGGCGGATGGGAGCCGCAGTGACGTTCTTCTCCAGGAGATGGCCCAGATGAGAATCCGACACCAGGAGGAGCTGACCGAGCTGCATAAGAAGCGAGGAGAGCTGGCCCAGAATGTCATTGAGCTCAATAATCAGATGCAACAGAAGGACAAGGAGATCCAGGCCAACGAGGCAAAGATGCAGGAATACCAGCAGAGGATCACTGAGCTGGAGGGCGAATGTCGGGAGCTGAGGAGCAGCCTGCAGGACCTGGAGAAGGCTAACCAGACGCTGAAGGACGAGTACGACGCCCTGCAGATCACCTTCAATGCGCTGGAGGATAAGCTCCGGCGCACCACCGAGGAGAACCAGGAGCTGATCTCGCGCTGGATGGCCGAGAAGGCGCAGGAGGCCAACAGGCTCAACGCCGAGAACGAGAAGGACTGCAGGCGCCGCCAAGCCAAACTGCAGAAGGACCTGGCAGACGCAGCGAAGGAGCCCCTGCCTATAGACCCAGATGACGACATCGAGGTCCTGTCTGAAGAGGCCCCGGAGCAGCCTGGAGAAACCTCGCCAGGCCGGGCGGCCAGTCGCACACCCAGTAAACGAATCTCCCAGCAGCCCCCTGGAGGTCTTCTGGATTCGATTTCTAATATCTTTGGGCGTCGCTCGATCAACTCCTACGGCAGCTCCCCGGAGGgcgcagacacgcacacagccCCCTGCACCGAGGTGCGGGTGCCCACCACTGCCCTGCATGTGTTTGACGCCCATGATGGGGAGGTGAATGCCGTTCGGTTCAGCCCTGGGTCCCGGCTGCTGGCTACGGGGGGCATGGACCGCCGAGTGAAGCTGTGGGAGATCGTCTCAGGCCACTGTGAGCTGAAAGGAGCTCTGACAGGCAGCAACGCTGGGATCACAAGTATTGAGTTCGACACAAGCGGTTCGTATCTGCTCGCTGCCTCCAATGACTTTGCCAGTAGGATCTGGACAGTTGATGACAACCGCCTGCGACACACGCTCACGGGACACAGCGGCAAAGTGCTGTCCGCGCGCTTCCTGCTGGACAACGCTCGCATCGTCTCGGGCAGTTACGACAGGACGCTCAAACTCTGGGATCTTCGCAGCAAAGTCTGTATAAAAACAGTCTTCGCTGGCTCGAGCTGCAATGACATCGTCTGCACCGAACAGTGTGTCATGAGTGGCCACTTCGATAAGAAAGTCCGCTACTGGGATATCCGGGCGGAGAGTATCGTGCAGGAGCTAGAGCTGCAGGGCAGAGTGACCTCGCTGGACCTGAACGCCGACCGGACCGAGCTGCTCACCTGCTCCCGCGACGACCTGGTCAAGATCGTGGACCTGCGGACCAACACTGTGCGCCAGACCTTCAGCGTTCCAGGCTTCAAGTGCGGCTCGGACTGGACACGAGTGACGTTTAGTCCCGACGGGAGCTACGTTGCCGCTGGCTCTGCGGACGGCACCTTGTATGTATGGAACGTGCTGACCGGCAAGTTGGACAGAACTCTGTGCAAGCAACACAGCTCAACCGTCAACGCTGTGGCCTGGTCGCCCTCCGGAGCCCACGTGGTCAGCGTGGAGAAAAGCAGCAAGGCTGTGCTCTGGTCCGATTTGTGATGGGCCAGCGGCCGGCCCAATCCGCTCCTTGGGAGAGCGGCTTCCTCATCAGCCAGGCAGACCAGGGCACTGAAGCTTCTGCTGGACTCCAGGTGAAAGGACCCCCTCTTACCCTTGACGGCGTTTGACAGACGCGCCCCTCTTGAAGAAAACGAATGGTGCGGAGTCTGAACCGCGGTGGTGTGTAGAAGTAAAGCACGGTGTACCAGCTGGGTGACGTGCCTGGTTGTGGCTGTGCGGTGAGGAATCTGTGAACTCCCCGCTGGCTTCCAGTCAGTATTTAAATCTTTTAACTTGTCCCCGATGAGCGATGCTTCACATTTAACGGTTTCAGCTTTGAGAATGTATGGAAAGCCGGGCAACCAGGCCTACTGGTTACAGCTGAGGGCTCAACACAAGAAGCAGACTGGGGCTTTTCATCACAAGAAAGATAATCTATTATGGACTACTTTCAACATGCGTTTACAGGCACTTGTCTTCaacctttgttttttctttttctttttttttgtgtgtcttgaaaatatgaatacatttaactgTACAGAAAAGTATGTGAAAATGCATTAGGATACTTATACAGGCAAGCTCGAGACCTTAGCTGCTCAAACTGAACATATTATCAATTTGCCCTTGGATGAGTTCTTCCAGAAAGTAGGACAGAAGACccaaaaaaatgttgaaaaacatGTGCAAGGTTGTGTGTAAACCCTGTTACTTTCCCACCACACAAATATAACTGCAAGTGCTGATACTGTAGCATAAAATACAGACGACAGCACTTTAAATGCAAGCAGAATCTAAATTAATCCTGTCCTCAAATGTCGAATTCAGTAGTTAGATGCTCCCCACAGTTCTCCATGTTCACCACTAGGTGGCAATTCAACCCAGGCCAAGCCAGCCAGGAGGCCATTTTTACGAATGGTCTTCCAGTTGGAATTGTAGCTTATAAACCCAAAGGTGTGATGAATGTTACTCTAGCAGAACTGCTTTTTTCCCAGCCGTCCATCCATATAAATCTATTGACCGTGGCTGTGTGACGTAATTGTATGAAATCAAGTGATGCTTGCTGCCTCAATTTATTCCTCACTGCAACGGCACTCAAAAGTCCTCCACTAAAGATACCCAAGACATGAGTTATGGATTgtgctttctgtttgtttatttagtttagatttgtgttgctttgttttcttcagtgcGTCATGCGACAAACAATCTGATTTCTTTTAAGCAGCAAGAGGATTTGCGCGAGTTGAACGCAGCAGCCGAACCGTGCGAAATAGTTCTCAAATGGATCCAAAAGAAAAAGCCTCTTCACAACTTTGATTGAAAGTAATCTGGATGGCTGAGGGACAGACTTCAGTTTCTGCTGTTATTAACAGGCTtggcacttgttttgtttaatttatgctCTCCCCACCTGGCTTTTAATTAGTGTTGATCCAAGGAGTATTTCAATGAAATCACAGATCTGATGACAAAGTAAGTGCGTCTTAATAATTGCTTCCCATTAAAAGGCATCCCTGTTAACTGCAATCAGGTTACGGCATGATGCACCTGGTAGAGTAAGTAGGTAGTCAGTTAGAATTAAAGTGAAAAGACTGAGAgcgtatttatttttttgaatctATATATCCATCTATCACAGATTTAATTGAGACTTGTACATCAATTAAGAACACAAATTACATTGTGGTTTTAGAGTCGGACGAACAGCATTATTGGATAGGGGAGGATTGTGATGATGGGAGGTGAGGGGGCGGGGGGtctgattgtattgtattgggaGCTGTTGTATTACAGTGTAGTTGACAACAGTGAGGGGGTGCTCTGTAAACCTCTGGGAAGCACAACAGGGTCTTGTTTCAGTGTCATAAACTGCAGCCAGAAAACCAAAGTCTTTGGCACATTGccgtggtttattttatttgcacgttttatagtttttattctGAGATGTGACTCGATCGCATTCCTGCCACTTGACTAGTGtgtctttcactgttaaaacaaaCGGACATCATCTGTGTTGATGAAATGAATGTTGAAACTGACAGAAATGACAAGAACTTTGGTCCTGGCTGAGTTAATGCACAAGGAATTACGAATCTCTCggaaaactatttattttatgatttcaaGTAGGATCTTTCTGTTGCTGttataatacttttaaatatttgagtTTGATGGACGTGCCAACGTTGGTGCTTTTGACAACGTGAAACACTTGACACCTTAACACTTCCCTCAAGCGTTTGGTGTCGAGGGAATGTCGACTGTTGGCACTTTTGCTGTCTTGAAACTTAAACAGAGAGCAAGTTAACATGCAGGCCATCGCATGAACAGaagtatgtttattattatttttttaatgaggccaatttgttttttgttttttaagtgccAAGTCTGCAGGAAGAAAGGAAAGTTCTGTGGAAAGTAATGCTTTCTCCATCGAGCTGTAGTAGCCAAGTTTGACAGCGATGGGTCAATCATTTGAATTCCCAACTTATTCattcaattcagtttttaaactgtttcaaGGGCCCTGTATCTCAATTCTGTTGAACCATGTGATATGATTTTCATGATCGTGTAACAAGAAGTCCCCTCATATTCATTCTGTGACGTGCCTCATGTCATATTGTAGGCAGACATCCGATCGATACAGACACCGCTTCCACAGTTAAGCGATCATGGTGCATATCTTCCAGGTTTTGCATATCTGTTCATATCAAGTCTTTCTGTGCAAAGTTTGTCGCCTGTGTCACCTCCATATCAGTCCAATCTGTCGCTGTGCTTGTGTGACGTTTACAGAATTAtggtgctttttttgttgttgctctaTGGGGTTGTTTTTTGCGAGTGGGCACTTGCCATCACAATGGAAATCTGGATAAAACTAATTTATCAACGTGTCGAATTTAAGGCCCATATATACTGGCCAAGCATTAAGGGATCTTTTACTCTGTCTGTGGGCAGTATCTAATGGGAAGGTATACAGAGGACTATCCAGTGAAGAAAATTACTGTGATATTTCTTGTCTGGTGTTGTTTGCATGGCCCAGGCACTGGAATCGCAGTGAGGAGCACAGTGTGTGTAACTTGTCTCTCAAGGCACACTACATTTACACAGTCCCCTTCCTTCTGCATGCCACTATAGAGGATAGAGTAATCACACCTGGAAATGGCTTCCTGGCTCTGAGGCGCGTTGACAGGTTTTGCATTTCCTTCCAAACATGTGGCCCCCGTACtttggttgtttatttgaaattgcaAATACACTCAATAGAAAGCATTGCTGTGAATCGATTTGAATCGCTGTGTGAAATAGTCCTACTTCTCCCTCCGCTTGATCGgcttaaataacaaaaaaataagtatttgtggATCGTCCTGCCCATGCAAACCCCTGGATTGTGGGTGCGGAGATCTATTCCCTGCGGGGCTGAACCCTGCTCTAGTCCAGTTCTCTCCAAATCAAGAGTCCCCAGCCTTGGCCATTGAGGGGCCACATGGGcatctgcttttcattccagctAGTTTCACACTGTGCTGATCCAACTGTTGGTTTGGCATTTGACGTGATGTTTTAGCAGCCAACTCGCTGAAGAGGCCTATGAAACCATGAACAACTGGGGCCGTCCTGGCCCAGCACTGAAGACAACTCTCTGATGATCTGACTGTTGGACCAAATACGTTCTGTTCAGTAATCAAGAAGGAGATGGGGAAGACCCTGCCAGTGGTCCTTCAGAACAGCTTCCGTAGCGCTAGCTTCTCGTCATACCCACACAGTGATCTGTATCTCAATATATGGCTGACAATATGTACTCGACTGTCTGAATGCTGAGAAAAGTGTTGTtgcgttttcattttttccttccAGTAGATGACTCATGTAATCGACGAAAGCCCTTTCGGAGACTAAAGCCCGGTGTGGGAGTGAGGTGGGGCCCCGGGCCGCGCGGCAGCGGTTGTGATCTCGGCTCACTCTGATGAAGTCCAAATGTTCCTGGCTGTCTCGGTCAGAAGCGTTTTCCCTCTGTTTGGTTGCACTTTATTTGAACAGTTAATATAATTGTATCAAACTCGCTGGGGAACAGATCCTAGAAACCTGTATGCCCTGACTTGCTCCactgtaaataattatattaataaaacaaatgttgtgtatactcttaatttaaactgaag

Function

symbol description
atg16l1 Predicted to be involved in autophagosome assembly and negative stranded viral RNA replication. Predicted to be active in autophagosome membrane. Is expressed in intestine. Human ortholog(s) of this gene implicated in inflammatory bowel disease 10. Orthologous to human ATG16L1 (autophagy related 16 like 1).

NR:

description
PREDICTED: autophagy-related protein 16-1 isoform X2

GO: NA

KEGG:

id description
K17890 ATG16L1; autophagy-related protein 16-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009495 True 6217 mRNA 0.48 19 39845409 39863181

Neighbor

gene id symbol gene type direction distance location
AMCG00009497 NA coding upstream 1545 39839181 ~ 39843864 (+)
AMCG00009499 NA coding upstream 7772 39827306 ~ 39837637 (+)
AMCG00009496 NA coding upstream 30631 39807424 ~ 39814778 (+)
AMCG00009488 NA coding upstream 279123 39560727 ~ 39566286 (+)
AMCG00009490 NA coding upstream 336905 39505934 ~ 39508504 (+)
AMCG00009498 NA coding downstream 2547 39865728 ~ 39872722 (+)
AMCG00009504 dgkd coding downstream 20821 39884002 ~ 39922108 (+)
AMCG00009506 NA coding downstream 59753 39922934 ~ 39930133 (+)
AMCG00009505 NA coding downstream 66965 39930146 ~ 39938281 (+)
AMCG00009503 NA coding downstream 104116 39967297 ~ 39982047 (+)
G57378 NA non-coding upstream 38481 39806583 ~ 39806928 (+)
G57329 NA non-coding upstream 385733 39459398 ~ 39459676 (+)
G57287 NA non-coding upstream 538635 39306488 ~ 39306774 (+)
G57286 NA non-coding upstream 539179 39303337 ~ 39306230 (+)
G57175 NA non-coding upstream 1010464 38757380 ~ 38834945 (+)
G57401 NA non-coding downstream 11700 39874881 ~ 39875170 (+)
G57428 NA non-coding downstream 78041 39941222 ~ 39943036 (+)
G57457 NA non-coding downstream 167365 40030546 ~ 40033333 (+)
G57523 NA non-coding downstream 296228 40159409 ~ 40159626 (+)
G57544 NA non-coding downstream 476201 40339382 ~ 40343381 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other upstream 408392 39434900 ~ 39437017 (+)
G57105 NA other upstream 1387817 38442255 ~ 38457592 (+)
AMCG00009428 NA other upstream 2228713 37608305 ~ 37616696 (+)
AMCG00009429 NA other upstream 2240285 37530822 ~ 37605124 (+)
AMCG00009415 wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084 other upstream 2381904 37422017 ~ 37463505 (+)
G57430 NA other downstream 84825 39948006 ~ 39949200 (+)
AMCG00009516 NA other downstream 223293 40086474 ~ 40105052 (+)
G57604 NA other downstream 1127621 40990802 ~ 40994659 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other downstream 1733048 41596229 ~ 41599124 (+)
G57830 NA other downstream 2172837 42036018 ~ 42078241 (+)

Expression


Co-expression Network