AMCG00009498


Basic Information

Item Value
gene id AMCG00009498
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39865728 ~ 39872722 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009498
ATGAGCTCCTCTCGGCACGTCATTTTCAAGAAGCTGTCTCGCGACAAGTCGGTTGGCGTCTACATGGGCAAGAGAGATTTTGTGGACCACTGTGAATATGTAGACCCCGTTGATGGTGTTGTCCTGGTTGATCCTGAGTtgctgaaaggaaaaaaagTGTACATCATGCTGTCCTGCACTTTCCGCTATGGGAGAGATGACATGGACGTCTTAGGCGTGGCCTTCCGGCGAGACATCTACCTGTCCACTCGGCAGGTGTACCCCCCCCTGCAGGACAGGAACACGCACACCAAAATGCAGGAGCGACTGCTTCGCAAACTGGGGGTCAATGCGTACCCCTTCTTCTTCGAGttCCCAGACAATCTTCCCTGCTCTGTCGGCCTCCAGCCTGCTCCTTCAGATATTGGGAAGTACTGCGCTGTAGACTTTGAGGTAAAGGCCTTCTGTGCAGAAAACCAGGATGATAAGATCCACAGACGCGGCCCCCCACCCAAGGCTGAGACCACCCGTGAGTTCCTCATGTCAGACAAGCCCCTGCATGTGGAAGTCAGTCTGGAAAAGGAGACATACTACCATGGGGAGCCCATCAATGTCCATGTCAACATCAACAACCGCTCCAACAAAACTGTGAAGAGCATCGTGGTGTCAGTGGAGCAGATTGCAAATGTGGTGCTCTACTCTAACGACAAGTACGTCAAGTCCGTGGCCACAGAGGAGATCGATGACCATGTCCCTCCTGGAACCAGTCTCAAGAAGGTCTTCACTGTTTTGCCACTACTGGCCAACAACAGGGAGAGGCGGGGCCTGGTCCTCGATGGAAAACTGAAGCATGAAGACACCAACCTGGCCTCCTCCAGCATAGTGCGGGAGGGGGTCCTGAAGGAGATCCTGGGGATCCTGGTGGCCTACAGGGTTGTGGTGAAGATGCAGGCTGGAGGTGAACAAGAGGACGAGATGGTCTTCGAAGAGTTCAAACGCTCCTACCTGAAGGGGATGGTGGAAGATGAAGAAGATGCCAACCTGTCAGCCACTGAG

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009498 True 1035 mRNA 0.54 12 39865728 39872722

Neighbor

gene id symbol gene type direction distance location
AMCG00009495 atg16l1,LOC107689588,LOC107551872 coding upstream 2547 39845409 ~ 39863181 (+)
AMCG00009497 NA coding upstream 21864 39839181 ~ 39843864 (+)
AMCG00009499 NA coding upstream 28091 39827306 ~ 39837637 (+)
AMCG00009496 NA coding upstream 50950 39807424 ~ 39814778 (+)
AMCG00009488 NA coding upstream 299442 39560727 ~ 39566286 (+)
AMCG00009504 dgkd coding downstream 11280 39884002 ~ 39922108 (+)
AMCG00009506 NA coding downstream 50212 39922934 ~ 39930133 (+)
AMCG00009505 NA coding downstream 57424 39930146 ~ 39938281 (+)
AMCG00009503 NA coding downstream 94575 39967297 ~ 39982047 (+)
AMCG00009510 polr2d,rpb4,LOC106612892,LOC107671669 coding downstream 149359 40022081 ~ 40025439 (+)
G57378 NA non-coding upstream 58800 39806583 ~ 39806928 (+)
G57329 NA non-coding upstream 406052 39459398 ~ 39459676 (+)
G57287 NA non-coding upstream 558954 39306488 ~ 39306774 (+)
G57286 NA non-coding upstream 559498 39303337 ~ 39306230 (+)
G57175 NA non-coding upstream 1030783 38757380 ~ 38834945 (+)
G57401 NA non-coding downstream 2159 39874881 ~ 39875170 (+)
G57428 NA non-coding downstream 68500 39941222 ~ 39943036 (+)
G57457 NA non-coding downstream 157824 40030546 ~ 40033333 (+)
G57523 NA non-coding downstream 286687 40159409 ~ 40159626 (+)
G57544 NA non-coding downstream 466660 40339382 ~ 40343381 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other upstream 428711 39434900 ~ 39437017 (+)
G57105 NA other upstream 1408136 38442255 ~ 38457592 (+)
AMCG00009428 NA other upstream 2249032 37608305 ~ 37616696 (+)
AMCG00009429 NA other upstream 2260604 37530822 ~ 37605124 (+)
AMCG00009415 wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084 other upstream 2402223 37422017 ~ 37463505 (+)
G57430 NA other downstream 75284 39948006 ~ 39949200 (+)
AMCG00009516 NA other downstream 213752 40086474 ~ 40105052 (+)
G57604 NA other downstream 1118080 40990802 ~ 40994659 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other downstream 1723507 41596229 ~ 41599124 (+)
G57830 NA other downstream 2163296 42036018 ~ 42078241 (+)

Expression


Co-expression Network