AMCG00009507


Basic Information

Item Value
gene id AMCG00009507
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39941212 ~ 39951534 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009507
GTAGCATAGCGAGAAAGCGGGTATTAAAAGCCGGGGAAGAGAAGTGAATTACGTGATGCATTACGAATACCATTCTTGTTCGTATGTGTAATTTATTACAGTAGCGCAATAAACGATAAATGCATCCAGGCGGCCGGAGTTAGCAAAACTACCATTGGAGGCCGCAGCTGTATCCAGGCAAGCCGAAGAGGGACCAGCGCTCGAACGACGAGCTTAACCGGGCTGGGAGCTTGTAGGAAAACCCGCTGCTTTTTGGTTTCATTGTGCGTCTTGAGATAAACGCACCGTGTGGAGGCAGGTGCCCCATTTAGAGACATCGTCCGCACGggacagcagggcagggggacGGGGCGGCTGTTTCCGTagtacataatttaatttaaaaaaagacacgATGGACGGAGATGACGACGATTTCTTCTCCGGAAGCCACTCAGATGATGGTGGGGCCACTCCAGTTCAGGACGAGCACGGCCTGGCATCCGACGCAGAAGAGGGGGCTAAAGGTCACCAGTCCGACTCGGAGGCAGGCAGCGTGGAGCGGCACTCTGAGGATGAGCAGAGCGATGCAGAAGGTGACGGCCCCTCCGCTCAGAGGAACGGCCTAGCCAGCGATTCTGAAAACGAGGATGCACCCCAGGCAAGGGACAGCGACTCCGAAAAGGAGGACGATGCACCCCCACAGCACGACAGCGACTCGGACGGAGAGGAGGCTCCCAAACGTGCAGATAGCGACTCCGAGGCAGAGGACGCTCCCAAACCCACAGGCGGCCACTCGGACAACGAGGAGGAGCCGAGCAAGCAGGCCAGTGACTCTGAGAACGAGGAGGAGCCCAAACGCCGGGGCAGTGACTCTGAGAATGAGGAGCCGGCACCGCCTCGTCGGGATAGCCGATCGGATAACGATGAGGCACCCCGGGAGAGAGGCAGTGACTCTGAGAATGAGGCGCCCAAGCGCAGGAGGCGGATACAGTCCGATGACGAGGCGGACAGCGACAAGGAGAACGGAGTGGAGACCAAGGCAGCGGGGGCCTTGGACAGCGAAGACGAGGCCAAGGCGGCGGACAGCGACAACGAGGAAAACCAGAGCCACAAGCGACGCAAACTGGCCGACAGCGacgaggaggaagagcaggacAAACCAGtgaagagaaagaaagccaTCCTGTCAGACAGCGAGgatgaggagaaggaggaatcCACTCCTGTGAAGAAGAGTCGTGTGGTGTCGGACGGGGAGGATTCGGACAGCGACTCATCGCCCAAACCGGCTCCCCCAAAGGCCAAGGTCCTGGGGTCAGACAGCGAGGATGAAGAGGCGGAGGAGGGCGGGAAGGCTGAAGCGGAGAAGAAGGACGAGAAGGAGCTGTTCGGCAGTGACAGCGACTCCGACAACGAGGAGGAGAAAATGATTGCGGACATTTTTGGTGAATCTGgagacgaggaggaggaagagtttacaGGTTTTAACCAGGAGGATCTGGAGGGAGATCAAGGCCAAGGAGATGCTTCCCAGAAGAAGAAGCAATCTATCGCCGACTCCGATTCGGATGACGATGTCGACAGGGGTGGCAAAGACTCCAGCTTTGTCTCCGACTTCGACGTGATGTTGGCCAAGAAGAAGGCGGCAAGCGGCAAGCGCCGGCGAAACCGTGATGGCGGGACGACTCTGAACACCCTGAAGAAACCTGCCCTGAAGAAGCTGACTCTGCTGCCCACCGTCGTCATGCACCTCAAGAAACAAGATTTGAAGGAGACTTTCATCGACAGTGGAGTGATGTCAGCCATCAAAGAGTGGATCAGCCCTCTGCCCGACAAGAGCCTGCCAGCCCTGAAGATCAGAGAAGAGCTGCTGAAGATACTGCAGGAGCTGCCCAGCGTGAGCCAGGAGACGCTCAAGCACAGTGGGATCGGCCGGGCCGTCATGTATCTGTACAAGCACCCCAAAGAGTCGCGGCCCAACAAGGACCTGGCGCTGAAACTCATCAACGAGTGGTCTCGGCCCATTTTCGGCTTGACCTCCAACTATAAGGGCATGACCCGGGAGGAGAGGCAGCAGAGAGACCTGGATCAGCAGGTGCCCCCGCGCCGCCGCCTCAGGGCATTGAGGCCAGGAGACCCCGGGTTCTGTGCCCGAGCCAGGGTGCCAATGCCCTCCAACAAGGACTACGTTGTGCGGCCCAAGTGGAACGTCGACACCGAGACTAACAGGAGCGGCTCTTCACGGAAGGGGCTGAGCCGCCTGGAGAAACACAAGAGGCGCTTGGCAGAGCAGAAGAAGCTGCGCAAGCTGCAGGGCGCCATCAAGATCAGTGTGGAGGGCAACCACATGCCCCTGTGAGGGGCAAGGGGACGAGGTGGTCCCACCAAGAAAGGGATGTCACGGGTGGACAAGCAGATGCGCCGTTTCGCCGACATCAAGCGGCTGACCAAGCCGGCCCATGCGGTGAAGATCAGTGTTGAAGGGAATAGGATGcctttgtgatttttcttttttgttcagttattttgtaaaaactctttatttttatgttccCAGTCAAAGCCACATTTTGCTCCGCCTCTTTCTGGACCAGATCCTCAGTGCTCGGTGGCAGCCTTGCAGTCGTGCAGCGCTGCCTGTGTCTCTTTGCTCCGGACGTTCCACGCTGTCCACCTTCACCGCTTTGCTGCCCTCTGGGAGCACAGGCCCAAAGTACTGCTGCGAAGTCCTGTCTGTGAAGTCAGACAGATCTTTCATCTTTCTGATCTACTGGAGACCCCTGGACAGAAAgacttgcttttattttgtttcctctgtcaatatatatatattttttttttaaccacatgATAGGTATCCATTAAACAGAGCTGGGGTTGCATTGCGAACGCAGCATTGCAACACTGTTAACTTCTGACTTCAGGACAACCAGTGACGTCACCTGCGTCGGTTCTTTTCAACCGACGAGACGTGATTTCTACAACATTCTGAGGTTTCAAACAGTCAATATCGAAATGTGTATCTCCATgcttgtattacatttttattataagttccattaaaaaaataattgcgTGAGAATAGGACtcattttgtgttgattttatgAAAGTTAGTCACTTACAGCTTCACCTTGAATGGTCAGTTAGACCTCTTGGAATCCCTCCGTTTGTTTTAGATGCATAGAAAGTACTTACAGACGACACTATATTTTAGTGCTTATATATCCTTAATGCCGAAAAGCTACATATAATGTTTACAAAACAGTCTCAGGAACCCAAtgataattgtgtttgtttaaagacATGCCGAGGTCCTCGTGCATAATTATGCTTTGATCAATACAGAATGAATTAGGAGCCTGGGCTTATAAACTTCTTCTGGAATAGTGATCTATGTTTGAAGATTTCTGCATTAATGGGACTGACACTTTGTGCATTTCCCCCCCTATAATTACATCCAACCTGCTAAATGGTTACCAGTCATTTGCCTTGTTTATCCtggttttaaacatgtttttttttaagtcaaataaATTAACTCAAGTGGAATGGAAAGGTGGAGGCATTTGCAACCCCTTTCTGTAGGTTCTTAGTCCTGCATCAAAAATATGACCTGGATGTGATCTAAGTGAGACGTACCAGTTCTTGATACGGGAGGGAGGCCTTGTACAGCATTTTAACAGCACGATAAGCGGtttctttattaatgtttatgaGCGTAAACCCTTATTCCCCACACACTGCATTGAGAGATCTGGTGTGGACCTTAAACTACAGATAGGTGGACCTCTGCAGACcatatgacattatttttcctGGTGTACCCCAGAGTAGGTATTTCCACATTTCCTGACCAGTGGGTTTCCAAAAGCCAGTGAATGGGAGGCCAATGACCACTAGCTTTACTGGCTGTGCCCTGTCTGTGGTTTCTGTTGAACAATGcacatcatttttcttttctaaaaataCCTCATTTATTGGTAGTATATTTGTAAATGGATGACGTatgcattgtataaatgttGACTATcgtatcaaataaaaatactgcaatTTCCAAAA

Function

GO: NA

KEGG:

id description
K17498 SPN1, IWS1; transcription factor SPN1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009507 True 4047 mRNA 0.51 15 39941212 39951534

Neighbor

gene id symbol gene type direction distance location
AMCG00009500 NA coding downstream 58977 39876059 ~ 39882235 (-)
AMCG00009501 NA coding downstream 113842 39819733 ~ 39827370 (-)
AMCG00009502 mb21d2,LOC106612350 coding downstream 172293 39767660 ~ 39768919 (-)
AMCG00009493 fgf12,fgf12a,LOC104939444,LOC102791340,LOC107384013,LOC100711708 coding downstream 248663 39679918 ~ 39692549 (-)
AMCG00009492 fgf12a,fgf12,LOC107572463,LOC107704679 coding downstream 286892 39646826 ~ 39654320 (-)
AMCG00009508 NA coding upstream 1883 39953417 ~ 39965123 (-)
AMCG00009513 ilkap coding upstream 35206 39986740 ~ 39996178 (-)
AMCG00009511 NA coding upstream 49529 40001063 ~ 40004644 (-)
AMCG00009523 NA coding upstream 75134 40026668 ~ 40027183 (-)
AMCG00009519 wdr33,LOC107695163,LOC107737411 coding upstream 78989 40030523 ~ 40042216 (-)
G57400 NA non-coding downstream 66983 39873971 ~ 39874229 (-)
G57379 NA non-coding downstream 134285 39806635 ~ 39806927 (-)
G57354 NA non-coding downstream 352301 39588686 ~ 39588911 (-)
G57351 NA non-coding downstream 353138 39580611 ~ 39588074 (-)
G57244 NA non-coding downstream 857788 39081421 ~ 39083424 (-)
G57524 NA non-coding upstream 207863 40159397 ~ 40159608 (-)
G57545 NA non-coding upstream 387813 40339347 ~ 40343479 (-)
G57596 NA non-coding upstream 769897 40721431 ~ 40777084 (-)
G57600 NA non-coding upstream 981431 40932965 ~ 40933210 (-)
G57858 LOC103374679,LOC100699862,LOC108250355,LOC107390564,LOC106535138,LOC106904453 non-coding upstream 2221724 42173258 ~ 42175707 (-)
AMCG00009472 NA other downstream 1103618 38827965 ~ 38837594 (-)
G57155 dner other downstream 1358392 38580285 ~ 38582820 (-)
AMCG00009437 NA other downstream 2032244 37889502 ~ 37908968 (-)
AMCG00009417 NA other downstream 2465177 37467254 ~ 37476035 (-)
AMCG00009408 NA other downstream 2546224 37285576 ~ 37394988 (-)
AMCG00009521 gigyf2,LOC107728389 other upstream 169929 40121463 ~ 40157471 (-)
AMCG00009571 LOC107087052,LOC105890629 other upstream 1863025 41814559 ~ 41826934 (-)
AMCG00009582 NA other upstream 2089665 42041199 ~ 42056128 (-)
G58025 NA other upstream 2697316 42648850 ~ 42673707 (-)
G58333 NA other upstream 3530887 43482421 ~ 43945297 (-)

Expression


Co-expression Network