AMCG00009513 (ilkap)


Basic Information

Item Value
gene id AMCG00009513
gene name ilkap
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39986740 ~ 39996178 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009513
ATGGCGTGTAAATACTCGACTCTCGGCACCCCAGTGCGATCTCGGCAATGGCCAACGCTAAAGCGATTCCCCCAGCCTCGGTGCTTCTCCGGCTCCCTGCTCTTCAGCAACGCAGGCACTGTAAACACTGGGCTGTCAGCTCGTGGCTTTCTCGTGTTTAATGAACACTTCAGCACGCCCGCTGCCCGGGAGCTTAGTCTGAGggaCGGGCGTGTCCTGGGAGTGCTGGAAGTGTCTCGCTCTCTGGGAGACGGGCAGTACAAGCGCTGTGGGGTGATCTCCACACCTGACCTCCGCCGCTGCCAGCTCTCACCCAGCGACAGGTTCGTGATCCTGGCCTGCGACGGCCTCTTCAAGGTCTTCTCTGCAGAGGAAGCGGTGAAGTTTGTGCTGGGGGTACTGCAGGACGACACCCTGCAGGAGAAGGAAGGGAAGACCCCGCAGGATGTGCGGTTCGAAACGGCGTGCCATCGCCTGGCCAACGAGGCGGTGCGGCGAGGCTGCGCAGACAACGTCACCGTCATACTTGTGGCCATCGAGTTCTGA

Function

symbol description
ilkap Predicted to enable metal ion binding activity and protein serine/threonine phosphatase activity. Predicted to be involved in protein dephosphorylation. Predicted to be active in cytosol and nucleus. Orthologous to human ILKAP (ILK associated serine/threonine phosphatase).

NR:

description
PREDICTED: integrin-linked kinase-associated serine/threonine phosphatase 2C isoform X2

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0046872 metal ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009513 True 546 mRNA 0.61 5 39986740 39996178

Neighbor

gene id symbol gene type direction distance location
AMCG00009508 NA coding downstream 21617 39953417 ~ 39965123 (-)
AMCG00009507 NA coding downstream 35206 39941212 ~ 39951534 (-)
AMCG00009500 NA coding downstream 104505 39876059 ~ 39882235 (-)
AMCG00009501 NA coding downstream 159370 39819733 ~ 39827370 (-)
AMCG00009502 mb21d2,LOC106612350 coding downstream 217821 39767660 ~ 39768919 (-)
AMCG00009511 NA coding upstream 4885 40001063 ~ 40004644 (-)
AMCG00009523 NA coding upstream 30490 40026668 ~ 40027183 (-)
AMCG00009519 wdr33,LOC107695163,LOC107737411 coding upstream 34345 40030523 ~ 40042216 (-)
AMCG00009522 wdr33,LOC107705313,LOC107653512 coding upstream 55973 40052151 ~ 40068249 (-)
AMCG00009517 NA coding upstream 109945 40106123 ~ 40118728 (-)
G57400 NA non-coding downstream 112511 39873971 ~ 39874229 (-)
G57379 NA non-coding downstream 179813 39806635 ~ 39806927 (-)
G57354 NA non-coding downstream 397829 39588686 ~ 39588911 (-)
G57351 NA non-coding downstream 398666 39580611 ~ 39588074 (-)
G57244 NA non-coding downstream 903316 39081421 ~ 39083424 (-)
G57524 NA non-coding upstream 163219 40159397 ~ 40159608 (-)
G57545 NA non-coding upstream 343169 40339347 ~ 40343479 (-)
G57596 NA non-coding upstream 725253 40721431 ~ 40777084 (-)
G57600 NA non-coding upstream 936787 40932965 ~ 40933210 (-)
G57858 LOC103374679,LOC100699862,LOC108250355,LOC107390564,LOC106535138,LOC106904453 non-coding upstream 2177080 42173258 ~ 42175707 (-)
AMCG00009472 NA other downstream 1149146 38827965 ~ 38837594 (-)
G57155 dner other downstream 1403920 38580285 ~ 38582820 (-)
AMCG00009437 NA other downstream 2077772 37889502 ~ 37908968 (-)
AMCG00009417 NA other downstream 2510705 37467254 ~ 37476035 (-)
AMCG00009408 NA other downstream 2591752 37285576 ~ 37394988 (-)
AMCG00009521 gigyf2,LOC107728389 other upstream 125285 40121463 ~ 40157471 (-)
AMCG00009571 LOC107087052,LOC105890629 other upstream 1818381 41814559 ~ 41826934 (-)
AMCG00009582 NA other upstream 2045021 42041199 ~ 42056128 (-)
G58025 NA other upstream 2652672 42648850 ~ 42673707 (-)
G58333 NA other upstream 3486243 43482421 ~ 43945297 (-)

Expression


Co-expression Network