AMCG00009514 (rpp21,LOC107653575,LOC107588084)


Basic Information

Item Value
gene id AMCG00009514
gene name rpp21,LOC107653575,LOC107588084
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40172966 ~ 40179050 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009514
CCTGGATGTAGGGGCTTATAGATCATTTAGGGAAACTACACGGGTATCAAGCGCCGTACTTTGTATGACGAAATGTAATCGaagcttttaaatcaaaataagcaAACTCTAAATACAAACGGGACACATGTTTCCTCTAGAAACTCATGTCCTCGCTTGTGAGAAATATCATGGAAATAcaccatttccatttttttagaCTCAGTctaagtatttgtttttgtttgttgtgcacTCGGATACAGATTGATTCCCGGCATAAGTAATCATTAGCTGCTGGTGATACACAACGGAACGACGGCCGCTGAATTGTCTTATAACTTCTCTTTATGCTTTAGGAGAATAAACCAATAACAACAGtattaaatgtcatttaattaaagaagaaGCACCCGGAAGCTACTGAGTCGTGACGTCAGCACTGTGGGTTAACATGATCATTTCGGATTACTTTGTCCTCCTCTAGGTATATCAACTTGTGTAACTCTTATTGCACAACCTAATGGCCGGCAACGTTAAAGATAAAGAAGCCTTTCAGAGACTCAACTTTCTCTACCAGGCGGCCCACTGTGTCCTGGCCCAGAACCCCCAGAATGTGGAGCTCTCTCGGTTCTACTGCTTCACACAGAAGACCATCTCCAAACGCCTGGTCCTGCGACAGGATCCTTCGGTCAAAAGGACAATGTGTAAGAAATGTTACTCTCTGCTGGTGCCCGGAGTAACAGCGACAGTGAGGCAGAGAAGGTGCGGTAAACGACAGAGGACCACAGTGGTGCGATGTCTCAGCTGTGCACAAACAAAGCGATTCCTCAACAACTCCGAGTATAAGCTGTGGGTGGAACAGCATGAAGCCCAGCTAGAGAACCAAGCCCAGCCTGATCAAGGTCCTGCACAGAAACCTCAGCAGAAGCCCAAGCAGAAAGGGAAACCAGCCAGTGGAAGTGCACAGGATGCTACTGTCAAAGCAGAGTAGCGCAGAGATGGATCTAGACCGCGAGTGCAGGAACTGTGAGGCTGACTTCAACGGCCGGAGCAGTGAGAGAATTTCAGATCGTCAGTTACCATGCAGAGGTTTATTCAACGTTTAAAGTTGATGGTATGATCACAGAAAGCTTACACGTGCAAAATGCTGCTGTTTCTTTTAGActtcatacatttgtttaaaataaaatgtaaatgcaaagtacttactttatttttgatgttATAATTGGAGTTCTTGacgattatttttaaattccatttaCAGCATAATGCTGACATGATATACAACATATACCATGATATGTACAGTACTTTCACTGTAAACAACGTAAGTATAAACATagattgtcattttaaatgaagattAATTAGATTAACTAGATTCATGTCCAGAAAGGCAGGCAGTATTTTTTCTCAAGTATTCAAAAAAACTCAAACTGTTAACTTCAACTTCTACACTGCTTGGTTTCCTTAAGTCCACAGTTGTCACATTTGTTACAACATCCGTTGCATTGTGAAGTAGTTGCATTGAATAATTACGCTTATTTTGCTTAATGCTtgaacctaaaaaaaaaacatatataaaagttAGCGTTTGGAGTCAGTCCATCACTATTGAATTGTGCTTTTGTTGCTCCAGGGTTGACAGATGTGTACTGATGGGAGGTGATCAGACAGATTGCTCTCTGATAGCCCACAGCTTCTCTCCTGGTTGTGATTTCAGTCGCCCTTTTTGCCCCCCTGCTTAGTACCAGTCCTCCCCATCTGGTCCGGAGAGCTCTTCCCCACAGGGACTCTGTAGCGGCTTTTCTGGGAGTAGAGGAGGTTCCGTGCAAAAAGTCGAGGAATGTGACCAGTGTATAGAAACAGTGCCAAAGTCATTCCTGCAAACGACACATGTCTCAAATGAAAACTGGTTCTGGCCCCAAACAGTctgacatttcacatttttagttaatttttaatctttttgatGTACAACCGATATTTTGAGATTTGATGCCCTGGACTTAGATGGTTTCCAGAAGACGATCCAGCAGACAAAATAATTCTCATCTCCTGGACTAAAactgcaatcaatcaatctttctctctctctctactggaGTGATTATGATTCTGTACATTCTgaatatggttttaatattttattaaagttgtgcatattttgtttgctgttatAAATTTCAAATTGGGATTCctattgaaaatattgttcagaaatatgacatgctgttttattaatatatatttttaatccccACCTGCATTCCTGCACTTCTAA

Function

symbol description
rpp21 Predicted to enable ribonuclease P activity. Predicted to be involved in tRNA processing. Predicted to act upstream of or within tRNA 5'-leader removal. Predicted to be part of nucleolar ribonuclease P complex. Orthologous to human RPP21 (ribonuclease P/MRP subunit p21).

NR:

description
ribonuclease P protein subunit p21

GO:

id name namespace
GO:0001682 tRNA 5'-leader removal biological_process
GO:0004526 ribonuclease P activity molecular_function

KEGG:

id description
K03540 RPR2, RPP21; ribonuclease P protein subunit RPR2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009514 True 2269 mRNA 0.41 5 40172966 40179050

Neighbor

gene id symbol gene type direction distance location
AMCG00009515 NA coding upstream 30686 40140469 ~ 40142280 (+)
AMCG00009509 NA coding upstream 100679 40071239 ~ 40072287 (+)
AMCG00009512 NA coding upstream 143506 40028792 ~ 40029460 (+)
AMCG00009510 polr2d,rpb4,LOC106612892,LOC107671669 coding upstream 147527 40022081 ~ 40025439 (+)
AMCG00009503 NA coding upstream 190919 39967297 ~ 39982047 (+)
AMCG00009525 LOC106584350,LOC105907042,LOC106599532 coding downstream 10091 40189141 ~ 40203113 (+)
AMCG00009524 NA coding downstream 33598 40212648 ~ 40220369 (+)
AMCG00009530 NA coding downstream 233163 40412213 ~ 40420872 (+)
AMCG00009529 NA coding downstream 257277 40436327 ~ 40441597 (+)
AMCG00009526 NA coding downstream 269769 40448819 ~ 40462899 (+)
G57523 NA non-coding upstream 13340 40159409 ~ 40159626 (+)
G57457 NA non-coding upstream 139633 40030546 ~ 40033333 (+)
G57428 NA non-coding upstream 229930 39941222 ~ 39943036 (+)
G57401 NA non-coding upstream 297796 39874881 ~ 39875170 (+)
G57378 NA non-coding upstream 366038 39806583 ~ 39806928 (+)
G57544 NA non-coding downstream 160332 40339382 ~ 40343381 (+)
G57597 NA non-coding downstream 650022 40829072 ~ 40829677 (+)
G57599 NA non-coding downstream 753917 40932967 ~ 40933210 (+)
G57690 NA non-coding downstream 1320914 41499964 ~ 41500218 (+)
G57770 NA non-coding downstream 1570505 41749555 ~ 41750144 (+)
AMCG00009516 NA other upstream 67914 40086474 ~ 40105052 (+)
G57430 NA other upstream 223766 39948006 ~ 39949200 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other upstream 735949 39434900 ~ 39437017 (+)
G57105 NA other upstream 1715374 38442255 ~ 38457592 (+)
AMCG00009428 NA other upstream 2556270 37608305 ~ 37616696 (+)
G57604 NA other downstream 811752 40990802 ~ 40994659 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other downstream 1417179 41596229 ~ 41599124 (+)
G57830 NA other downstream 1856968 42036018 ~ 42078241 (+)
AMCG00009647 NA other downstream 3257940 43436990 ~ 43444420 (+)
G58324 NA other downstream 3753902 43932952 ~ 43935762 (+)

Expression


Co-expression Network