AMCG00009517


Basic Information

Item Value
gene id AMCG00009517
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40106123 ~ 40118728 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009517
GAGGGTTATAGGAGGCAGGCAGACTGTCTGGCTTGCCTGCTCCTGCGAGGGCagtttgtgtgcgtgtctgaGGGTTTTAAGGACAGCCTCCCTTTAACCTCTGCAGGCAGAGCTGTTGAGAGTCCCCTCAGGCTTCACGGAGGAAAGATGGCTTCAAGCAAACCCCAGAGATTCTTCCTGCTCACCCTGCTGGGCCTGTGGATGGCAACGGCCAGGACAGAGACGGTGGCTGAACCCTCCCCCACTCCACACAGCGAGAACCTGGAGACGACGTCAGGGGCAGGAGCTTATGACATCACCACGAGGTACCCCTTGCGTGACCACACAGATTACGTCATAGAGTACGTGGATACCACCCACTCGATGGACCAGCCGATGGACCACGAGGAAAGTGTGTTGGGCCCCGGCGCCATCGCAGCAATAGTGATCGCCGTGATCCTGGGGGCGTCTGTGCTCATAGCCCTGATCGTCATCACGCTCAAGAAGTTCACCACCGCTTAGAGACCGCAACCAGCCCCCTGCCCTGCCCACCCGACCACCCCACTCCTGACCCAGCCTGCTGGTGCACCGTCCCGCCCCCTCGCACACCCCCGCCCCGCCTCTCAACCCTCTGAAGTCTTTTTCCCCTCAGACCAACTCTCTTGCAGCGGACTACAGTAGAGCCTCGAGGATAACAGAAGCAAGCTAGCGGTTTTCAGAACCCAGCCTCCATATTTAATTTCCGATCTCCGCGGTACTCGGAGGAACAAGAAAGCCTAGATGTGGCTCGGGGGGAAGCTTGAGAAGAAAGTGCTTGGGGTAATGTGAGTTCCAAGCATTTGATATGGTCGCTTGCTTGCATATCCCATCGTTTCGTCACAGTTTTAATTCCTTGCGTTTAGATCAGCCTCCAGCGAGCTGTCTCCAGTTGTCGTTGTAGGAGATTCCATGCTTCATCCCAGCTTGTCTTTCACCTGATTGTGAATGTAGATTGCATTAAACTGGATTCTGGGAGATCATTATCTTTTACTGTCATATAAGCACAAATGGTTAGTCTGTGTACAtccgagcgagagagagcggtTTTTGGAGATGGCAGGTTTGGTTTTATAAGCTCAGGAGAAATCCTGGAAACAACAGCTCAGCAATGACTAGAATCTGTATCCAGGGTGTGTCAACAAAGAGCAAGGTTTACGAACTGAGGCTCTACTGAAATACCATATATATcattacccccccaccccaccctttATAGAGAAACCTTGTTTTACCTTTTaatgagaagagagaaaaatgcaGGCATTTCATATAAACTCCTCATAAGATAACAGGGGAactctgtgtaaatattttaacattttaaaatgagtctGGAATAcgttttttgttaattttgaagCCTAGttggaaaatataaacatacaaacagtGCCAGTTTACATGCCAGACAGAAGACAGTTGTTTTATGTAGTAATCATTAATGTAAAGGGGTTTTAAAGTGAGACTAACCAGAAGTATATTTGCTTGTCCttagttattgatttataatgtgTTGTGGTGAAgttatagatttttaaaatacaacttaCACAAGGAGCTGGCTGTGCGGGGACACTTTCTACCACTGTAGGGTAGAAGTGACTCCAACATGCCACCCTTGAATCACTGACTCCTCAAAAGTGATGTAAACTCCACTGCCATTGTGGTTTCCTTCGTTTTCCAATTGATCATAAAAACACCCTCTGAACTGACTCCCGCCCAGCTGTGTGAAAGTGCATTGTGTTCACAGGGACAATATACTTGTAGAGCACGCTGTGAAGAGACAATCTCGGGCCTGGTTACGTATTTCTTCCGAGTCAGGACAAGGGCATAGAGATCCGTGTCCTCTGAGGAAGGACATGTTACCCGTGTAGCGTTATTCAGTCTCCCAATCCTTTGGTAGGGATCGACAGTCCTTCTATTTGAACCGGGGGGACTGGATTTGATCCAATGAGCTCTGAGTATTCACTTGGAGCATACAACTGAAACCTGAGCTGTATGCTGCTACGTTGCCAAGTGCTCTCTGTgctttcccagcatgcaccacCTCACAGTGCACATACAGGTAAATAAGTAATCCAGACTTTCCTGGTATCTGCATTTTTGAATTCTCAGACACTTTCAGAGAGTCAGATTCACTCTTAATGTGCTATTGATGGCTCCACAGGGCCTGGGGTTTATGACCTCTGATCTTTGCCATCCAGTTGTTAacagaatgtgtttgtttatgcacAACCATTTGTTCATGCAGCcgttaaaatgtaataatattgacCAATTTGGCCAGCTGCTTCCTTATAGAGTGGGATTTAATGTAGggtgaaataataatttgaaaagcCTTTTCCAAGGGTTTCAATGTGAAAGTTTGACACTTTATGCAATTAGTTTTCtttccaataaatatttaacctaGCCTGTaggaattgttttaattttaattttgatggagcctgtttgttttgtggtgaccggttttaaaataaagttgtcTGTTTATGGATTGTGTAGTCGCATATGTAATGCACTGCGCAGAGCGATATACACAACGAGGAAAGTCAGCACAGAGATGTGTGGTTTGGTGAGAAGCAGAGAATGAAACCGTAAAACATGGGTTACCAGCGATCACAAGCATAATCTTCCTTTCTTCAAGGAGTTGCAGGCGGATTCAGTAAAAAGAGCCTTTATACCCAGGCTGTTTATAGATCCCCCTTAGGTGTGTGTGCGAGAGCTGATGATAAACGCTCTTGTGCCTTATACAGAAATAGGAGGATGTCAAATAAGAAAAGcttctgaaataaaattattgGCCTTGTATTTAATCCTTCTGTAGGGGCTCCTGAGTTTGAGTACTTATGGCGACACGTCAGCTTTTGTGAGGTGACAGCATCCGAAAACGCACCGTTCAGATTATATACACAGGGCCAATTTGCCAGTTATTAAGTGCATCAGAAGCGAtcctttgatttgattttatgttattaatcCCAGATGGAAGGCGAAATGCAGCTGTTTTCTGGGGTAACAAAAGAGACCATTGAAAAGATGTAACACACGAGTTACTCAAAGTCTTGTGATAAGGCGCAAATGTCACCGTCCGTCCACTTCTGTCACTGTCAGAGGTGAGCGTCTCTCTCTCGCTATACATTTCAATCTATATCTtgataaaacactgaaacacacaactACGCATCCATCTCCGCACACACTTGCataaacgcacacacaaaacctttatatgtttatataccaAAGGCAGAATGCTAAGATTAGAAGAcatggaaatgtgtgtgtgtgtgtatgtgtgtatatatatatatatatata

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009517 True 3345 mRNA 0.45 4 40106123 40118728

Neighbor

gene id symbol gene type direction distance location
AMCG00009522 wdr33,LOC107705313,LOC107653512 coding downstream 37874 40052151 ~ 40068249 (-)
AMCG00009519 wdr33,LOC107695163,LOC107737411 coding downstream 63907 40030523 ~ 40042216 (-)
AMCG00009523 NA coding downstream 78940 40026668 ~ 40027183 (-)
AMCG00009511 NA coding downstream 101479 40001063 ~ 40004644 (-)
AMCG00009513 ilkap coding downstream 109945 39986740 ~ 39996178 (-)
AMCG00009518 LOC103034503,LOC107683000 coding upstream 41494 40160222 ~ 40167501 (-)
AMCG00009520 NA coding upstream 59758 40178486 ~ 40180235 (-)
AMCG00009528 NA coding upstream 339079 40457807 ~ 40472602 (-)
AMCG00009527 NA coding upstream 353908 40472636 ~ 40480067 (-)
AMCG00009531 NA coding upstream 362948 40481676 ~ 40493252 (-)
G57400 NA non-coding downstream 231894 39873971 ~ 39874229 (-)
G57379 NA non-coding downstream 299196 39806635 ~ 39806927 (-)
G57354 NA non-coding downstream 517212 39588686 ~ 39588911 (-)
G57351 NA non-coding downstream 518049 39580611 ~ 39588074 (-)
G57244 NA non-coding downstream 1022699 39081421 ~ 39083424 (-)
G57524 NA non-coding upstream 40669 40159397 ~ 40159608 (-)
G57545 NA non-coding upstream 220619 40339347 ~ 40343479 (-)
G57596 NA non-coding upstream 602703 40721431 ~ 40777084 (-)
G57600 NA non-coding upstream 814237 40932965 ~ 40933210 (-)
G57858 LOC103374679,LOC100699862,LOC108250355,LOC107390564,LOC106535138,LOC106904453 non-coding upstream 2054530 42173258 ~ 42175707 (-)
AMCG00009472 NA other downstream 1268529 38827965 ~ 38837594 (-)
G57155 dner other downstream 1523303 38580285 ~ 38582820 (-)
AMCG00009437 NA other downstream 2197155 37889502 ~ 37908968 (-)
AMCG00009417 NA other downstream 2630088 37467254 ~ 37476035 (-)
AMCG00009408 NA other downstream 2711135 37285576 ~ 37394988 (-)
AMCG00009521 gigyf2,LOC107728389 other upstream 2735 40121463 ~ 40157471 (-)
AMCG00009571 LOC107087052,LOC105890629 other upstream 1695831 41814559 ~ 41826934 (-)
AMCG00009582 NA other upstream 1922471 42041199 ~ 42056128 (-)
G58025 NA other upstream 2530122 42648850 ~ 42673707 (-)
G58333 NA other upstream 3363693 43482421 ~ 43945297 (-)

Expression


Co-expression Network