AMCG00009518 (LOC103034503,LOC107683000)


Basic Information

Item Value
gene id AMCG00009518
gene name LOC103034503,LOC107683000
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40160222 ~ 40167501 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009518
ATGATTGCGGGCCCTGTTTCTGGGTCCGGAGACGGGGCGGGGGGTGTCGTTGGCCACGCCCCCCGGGATCTTCTCCTCTCGGTGAAAGTGCAGCGCGCCGTGGCGGGGCAGCGGAGAGGCTGTGCGAGTTTGCGGGAGAAGCAGCCAGGAGTCGACGCTGAGATTTGGGAAACCCCTTGGACCACAATGGCAACTGAGGAGCTGGCGCGGAAGCTGCAGCGCAGGTTGACCGTGCAGCAATGCGTGCACCCTGACAGCCAGAGCAGTGCGGCTGCGGGTGATAACTGCGTGAAACCCGCCGGGGGTGACCGGGAGGAGAAAGCGGCAGCAGCCGCCGCCGCCACCGCCAATGCGAGCTCGGAGCTGAGTGCCAAGCTGAGCAGGAGACTGGACATCAACCAGGGCACCGCGCAGCCCAAGCAGACCAAGATCTTCAACCCGTACACCGAGTTTAAGGAGTTCACCAGAAAGCAAATCAAGGACATGGAGAAAATGTTCAAACGGTATGATGCTGGGAAGGATGGCTTCATTGACCTGATGGAGCTGAAACTCATGATGGAGAAGCTGGGAGCTCCGCAGACTCACCTGGGCCTGAAGAACATGATCAAGGAGGTGGACGAGGACTTTGATGGCAAACTGAGCTTCAGAGAGTTCTTGCTGATCTTCCAGAAGGCGGCGGCCGGTGAGCTGCAGGAGGAGAGCGGCCTCTTGGCCCTGGCCAGGCTCTCCGAGATTGACGTGTCCACGGAGGGCGTGCTGGGAGCAAGGGACTTCTTTGAGGCCAAGGTGCAGGCTCTGGCAGTGGGAAGCAAGTTTGAGGCCGAGAtcagggaggagaaggaggagaagaagcgGCAGGAGCAGGAGAGGAAGAGACGCCGCGCTGCCTTTAAAGAGCTGCAGTCAGCCTTCAATTCCTGAGCCCCTCGCTGTGGCCCACCGCATATCCAACTTTCAAACTCCAGACACCACCAACATGATGCAGCCCCGGGGGGGCGGGGAGGGGAGGGCTGGGGTCTCAGTCTCTGTGGAAGAGGTCCACCTTAGAAATATCTCACCTAGGTTGTGGTGGCATCCTGGAAGCTTGGGATGAGATCCAGATAAGAGCTTCTAATGTGCCGCTAACGTTGTGTATTGTAAGTATTCTACATCTTGTCCCCTTTGAGGAATTGAGGAGTGCCATGACAATTTagtagaacaaacaaacaaaccaaatttTAACAAACCACACTTTGGAGCATCGGGTCTCCTGCTTGCAGcccattttaaatgctttttttcagCTCACTCTTAACAGCTACAGTTACAAATGATCAAAtgaactatatatttaaaaaaacaaatgtccatTCCATACAAGGCaggattataattattaacattGGCTAATGTTTGCCCAGATCAATagacatttacagaaaataagcaCATAGTTTCACTTTAAGATTGCCAGTCGATAGTTAATTTAAgcgattttattttgtacaataaTAGGTAACCATTTATTGAGAGACCAGTTGTCTTGTAGTGAGGAAATTGGATTTGATGTCTAATGGATCATGTTGTCGACCAACAGCAGAAGTCAATATTTAAGTCACATGGCATCTCTTTGACAAGGAACTGCACTGGCTGACTGTGGGTTACATTcgaaaacatacattattctGGCCAAAATAATGCCTTTTTGGCTTAATCTACCAAAAAATGACCCACACTCACCGAAATCAACAGGTCATGGTGGTGTAAAGCctccaaaataattaaaaaatatgttaatgaaatgtaaaacgTCATTAGAGAAACATACAGAAGCCTCCCTGTTCAATATTTGCACTGCTCtgtctttaaatgttttcctttctgtgtttgtgagtgttttTTATGAATTTCAAAGGTGCAGCAACTATGTGATCGGAGGCATGGAGCCACTTAAAGAAATagtattaaaactaaaatatcctGCTGTCTTTTAAGATTTTATTGTGTTAGgtgtaatatttattgtatttaatatttgaattaattatacCCAATGTTAAACTAATTAGCAACTTACGG

Function

NR:

description
EF-hand domain-containing protein D2-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23922 EFHD2; EF-hand domain-containing family member D2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009518 True 2058 mRNA 0.48 4 40160222 40167501

Neighbor

gene id symbol gene type direction distance location
AMCG00009517 NA coding downstream 41494 40106123 ~ 40118728 (-)
AMCG00009522 wdr33,LOC107705313,LOC107653512 coding downstream 91973 40052151 ~ 40068249 (-)
AMCG00009519 wdr33,LOC107695163,LOC107737411 coding downstream 118006 40030523 ~ 40042216 (-)
AMCG00009523 NA coding downstream 133039 40026668 ~ 40027183 (-)
AMCG00009511 NA coding downstream 155578 40001063 ~ 40004644 (-)
AMCG00009520 NA coding upstream 10985 40178486 ~ 40180235 (-)
AMCG00009528 NA coding upstream 290306 40457807 ~ 40472602 (-)
AMCG00009527 NA coding upstream 305135 40472636 ~ 40480067 (-)
AMCG00009531 NA coding upstream 314175 40481676 ~ 40493252 (-)
AMCG00009532 NA coding upstream 327698 40495199 ~ 40495887 (-)
G57524 NA non-coding downstream 614 40159397 ~ 40159608 (-)
G57400 NA non-coding downstream 285993 39873971 ~ 39874229 (-)
G57379 NA non-coding downstream 353295 39806635 ~ 39806927 (-)
G57354 NA non-coding downstream 571311 39588686 ~ 39588911 (-)
G57351 NA non-coding downstream 572148 39580611 ~ 39588074 (-)
G57545 NA non-coding upstream 171846 40339347 ~ 40343479 (-)
G57596 NA non-coding upstream 553930 40721431 ~ 40777084 (-)
G57600 NA non-coding upstream 765464 40932965 ~ 40933210 (-)
G57858 LOC103374679,LOC100699862,LOC108250355,LOC107390564,LOC106535138,LOC106904453 non-coding upstream 2005757 42173258 ~ 42175707 (-)
G57873 NA non-coding upstream 2037769 42205270 ~ 42205559 (-)
AMCG00009521 gigyf2,LOC107728389 other downstream 2751 40121463 ~ 40157471 (-)
AMCG00009472 NA other downstream 1322628 38827965 ~ 38837594 (-)
G57155 dner other downstream 1577402 38580285 ~ 38582820 (-)
AMCG00009437 NA other downstream 2251254 37889502 ~ 37908968 (-)
AMCG00009417 NA other downstream 2684187 37467254 ~ 37476035 (-)
AMCG00009571 LOC107087052,LOC105890629 other upstream 1647058 41814559 ~ 41826934 (-)
AMCG00009582 NA other upstream 1873698 42041199 ~ 42056128 (-)
G58025 NA other upstream 2481349 42648850 ~ 42673707 (-)
G58333 NA other upstream 3314920 43482421 ~ 43945297 (-)
AMCG00009672 NA other upstream 3822010 43989511 ~ 43995654 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036477 efhd2 coding NC_007119.7 CM002892.2 25818622 ~ 25846188 (-)