AMCG00009519 (wdr33,LOC107695163,LOC107737411)


Basic Information

Item Value
gene id AMCG00009519
gene name wdr33,LOC107695163,LOC107737411
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40030523 ~ 40042216 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009519
CACGGTGCTGATGTCAAGTGTGTGGACTGGCATCCAACCAAAGGCCTGGTTGTGTCAGGGAGCAAGGACAGTCAACAGCCAATCAAATTTTGGGATCCAAAGACGGGACAGAGCCTGGCCACGCTTCACGCCCACAAAAACACAGTGATGGAAGTGAAGTGGAACCTGAATGGCAATTGGCTGCTCACGGCGTCACGTGACCACCTGTGCAAGCTGTTTGACGTGCGGAACCTGAAAGAGGAACTTCAGGTCTTCAGGGGTCACAAGAAAGAGGCCACAGCTGTTGCCTGGCACCCCATCCATGAAGGCCTGTTTGCCAGCGGGGGCTCTGATGGATCTCTGCTCTTCTGGCATGTTGGAGTGGAAAAGGAGGTGGGAGGCATGGAGATGGCCCACGAGGGCATGATCTGGAGCCTCGCCTGGCATCCATTGGGCCACATCCTCTGTTCTGGCTCCAACGACCACACAAGTAAATTCTGGACCAGGAACCGCCCTGGAGACAAGATGAGGGATCGTTACAATCTGAACCTTCTACCTGGCATGTCAGAAGACGGTGTGGAATACGATGATATTGAGCCCAACAGCATGGCAAACATCCCAGGAATGGGTATCCCTGAGCAGCTGAAGATGGCGATGGAGCAGGAGCAGAGTGGGAAAGAGGATGTCGGTGAGGCGGAGATGACAATCCCAGGCTTGGACTGGGGTATGGAAGAAGTGATGCAGAAAGACCTAAAGAAGGTCCCACAGAAGAAAGTTCCCTACGCCAAACCCATCCCAGCACAGTTCCAGCAGGCCTGGGCAGAGAACAAGGTGCCTGCTCTTGCCCCTGGGGAGCTCCCGAAGGAGAGGAAGGATGAGAAGAAGGTCGATGGCAAGAAGAAGACTCAGGCGGAGATTGAGCGGGAGATGGCAGCCCTGCAGTACACCAATCCGCTGCTGCTGGAGCAACTCAAGATTGAACGTCTTGCTCAGAAACAGTCAGACCAGGGTGCTCCTCCTCCAGGCCCCCAGCAGGGGGCGATGCAGCCTTTCCCTGGACAGGGGCCCATGCCCCCACCTCCTCAGGGATTCCAGCAATCTATTCCACAGCAGATGCCCCCCAACATGCCTCCTATGGGTCCAGGAGGCCCACAAGGACCATTTATTCCCCAGGGCCAGATGGGCCCCCCTGGACCTCAGCTGCACCAGGGGCCTCCTGGACCTCAGGGCTTCATGGGGCCTCAGGATATGCATGGGCCACAGGGCATGCCGAGGCACCCAGGCCCTCATGGACCAATGGGGCCTCAGGGGCCTCCTGGTATGCAGGGCAACAAGGGCATGCATGGACCTCCAGGAATGCCTCCAGGATCCAGAGTTATGCAGGGCCCACCCCCAGGGGGAATGCAGGGTCCTCCAGGGCCACCAGGGGGCATGATGGGGCCCCCACCTCGTGGAATGGGGCCTAGAGACAATCAGGGACCTCCTCAGGGAGGCATGATGGGTCCCCAAGACATGAGGGGGCCCATGCCCCAGGGAAACATGATGGGACACCAAGGGCCACCCATGCAAGGGGGGATGATGGGACCCCCAATGCATGGCCCCCAGAGCCAGCAAAACCAGCCTAGAGGTCATGGAAATATGCAGGGAATTGGGAACATGCATGGAATAGGAAACATGCCAGGTCCTCCGGGGGGTATGCATGGACATCCTGGAAATATGCAGGGACATCCTGGAAATATGCATGGACCTGGCAATATGCAGGGTCCTCCGGGCAACATGCAGGGACCTGGAAACATGCATGGACCTCCAGACGGGACAGAACCAAGGGCCACCTCCACTGATGTCCGGGATGGTGACGGGCTGCTGGGTCCTTGCCCTGGCCCGGTGGTTAGGGTGCCCAGCCCCGGCCATGGTGGTATGATGCTCCAGCCACACCAAGGAATGGGCGATTGCTGGCATCCAGGGCCCGGTAACATGCCTGGCACTGCAGGACAGCCAGGGGACGCCCGTGGGCCGCCCAACCATCACATGGGTCCGCCACCTGACCGGCGAGGACCTGAGGCGGCTGTGGTACCGGAGCAAGGCTCTGAACGAGGCGGGCCTTTCTGGGGGGAGTCACGTGACGGACGCCGCGGCCCCACTGCGGAATTCGAGGGCCCAGATGACCGGTTCCGACCCCGGGGGGAGGAGAGCTGGaggcaacagcagcagcaccccacccccccgccgcGAAGCCAGAGCCAGGAGTTCCGCGAGGGGGACTCCCGCGGCCACAGCAGAGGAGGGCCCCACGGAAACTGGGAGGGCCGGCGGACCTCGGAGGAGAGGTTCCCTCGGGATGGGGAGGAGCCGCGGTTCAGGGGGCGCAGGGAAGAGAGGTTTGACAGTTACGAAGGCCCCGGGGAAGAGTTTGAACAGAGGCCGCGAGACCAGAGACGCCCCCCCCATGGCCGGCATGGACAAGATTTTGACCATGAGCAGTCGGACGAATCATTCCGGAGGGGCGGCCCTGCGCGGCACGACGCCCGGGGCGGACGCAGCTTCTCCGAGGAGTTCTCCGGAGAGGAGGGTTACGAGCCGCAGGATGACAAAGCGAGAAGCTGGGATgctggagggagggggaggagtcGTGGGACACCCAGAGGAGGCGGACGGAAGGGGCTGCTCCCAACTCCCGATGAGTACCCCCCACATTACGAAGGCGGACGCAAGCCAGACAACTGGGAGGCCGGGCGAGACCCAggTCATGAACACTTCAGGGATGGACCACGGCCCGACCACACACCCCGCGACAGCCCCTCCCCGGCCAGCAGGGAACGCTCCTCCTCCCTCCAGGGGATGGACATGGCATCGCTACCCCCCCGCAAGAGGCCCTGGCATGACGGGCCGGGCACAGGCGACAGAGACTCCCCCGGGGGCGGCCCTGATGACCGAGCCCCTGGCCGTGGCTCTTCTCAGCGCGGGATGAAGCTGGGCAGGTCCGGCTCTCAGGACGGAGACTCGCACAGAGAAGAGGCCGGCTTCGGGGGCACGTCCCGAGGAGCAAGGGGGACCTGGGGTCGAGGTTCaggcggaggaggaggcagTGGAGACGGCGGACGTGGCGGAACAGGAGGGGCAGCCGTGAACATGAACAGCTCCGGGCCGGCGCGGCGCGGCTCCACTCGCGGGTCTTCACGGGGAAGCCGGGGCCGATAGGGCTGACAGAACTACGGTGGGGGTAGAGGGACAATGTTTCACTCTTGACATGCTGTGAAGACTTGAGCGGGACAATCCTAAGGCCTCGGGGACAGGTTCAAAGCAGGGGGGATGGGGTGGGATTGTGGGGAAGAGCAGCAGCACCTTCCAGAGGTGGGACGCTAGCAGAGAAGGgcagcagcacagcactgctCCTCACAGGACTCGCGCTCTTTACTGGGATCAACGGGGCCACATCCTGCTGGATTAATTGACTCGAAACAGAAactccctgtgtgtgtgaatctgtgtgtttattgctCCTCTGTCCACTCATTAACCCCCAAGCTCCTGTCCAAGGCAGTTTACCCTATATGTCACAGGAACAGGTCCAATTAGTGGTTAGGTATGTCTTCACACACAGCCTGTCCACTGTCTGTCCTGTTGGCACCGAACTGTCATGCAATCGGTGTTCTCCCATTCTAATTCTTTGTACGGCATTTCATCTCCCACCTTTTCCACTTGTTCTAACTCTTCCCTCACTAATCCATTCATCACACACTTCCAGGATGAGCGCCGGTACCGATGTCTCTGGCATCGATGACAAAGGAGACCTCCACACGTAGAGATCTCGAATGAGTTGATGGAAACGAGCTCAGATGGTTGATTTTTTGGTTATGTTTCACAGTCTCGGTTGTACGATTTTCACACAGGTTGATTCAGTGCTCTCCCTTCCTGTCTCACTGTCACAGACCTCAGGCCAACACCCATTGACAGTATTCTTGGACTGTCCTTCCTGACAGCCACCCCAATTATAAAACCCAAGGACAGAGTATTGATCGACAGGATGAGTTTGTCAGCTCACCGTGGATGAGGTGGCAGTTACAGCTGCAGCTGTTTTCCATGTTGTATTTCCATCTCTTATTCCCCTGAGACACCCAGATGCCCCCTGGCACCCTTGAACAAACCGATCGGACATTTTCTGTCACTcacctttcttctttttatagAAGTGCCATTGGATTAAAAGatgtaaataaattgaataaatgcagaaagaaaTCAACAGCTGGATGCTCTAATTCTAGTTCTTGCCGCTGGTGTTCGCTGTGTTCTGAAATGGGGGGACGCGTCCATCCTGCACGAGGAAAGTGGCGCGAGAGCCACTGCGGCTCTGTTCTCACTGAGGAAATTCAGTAATTGATGTTTCCGATTCTACACATGTTTTTTCCGGGAGAGCACATTTTGCtacaaagaaaagaacagcGGGTTctcgtttgtttttctttacggAACTCCTAGTTTTCTTTGgttcctttttaaaacaagcaaaaaaaaaaaaaacaccacaaaaaaaaataaaagtatactgGACTCTGTAACATTGCCAGGCAACTTTCTGGGTGTGCAGAGACAGTGTGTTTCTTTGTAATTGTACAGTTTGTCAAGAGATTGTcatatcgttttttttttgttcattttttttgtatgaaactGCAATAGAATTTGTGCAaaatttaccaaaaaaaa

Function

symbol description
wdr33 Predicted to be involved in mRNA polyadenylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Orthologous to human WDR33 (WD repeat domain 33).

NR:

description
PREDICTED: pre-mRNA 3' end processing protein WDR33 isoform X4

GO: NA

KEGG:

id description
K15542 PFS2; polyadenylation factor subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009519 True 4686 mRNA 0.57 18 40030523 40042216

Neighbor

gene id symbol gene type direction distance location
AMCG00009523 NA coding downstream 3340 40026668 ~ 40027183 (-)
AMCG00009511 NA coding downstream 25879 40001063 ~ 40004644 (-)
AMCG00009513 ilkap coding downstream 34345 39986740 ~ 39996178 (-)
AMCG00009508 NA coding downstream 65400 39953417 ~ 39965123 (-)
AMCG00009507 NA coding downstream 78989 39941212 ~ 39951534 (-)
AMCG00009522 wdr33,LOC107705313,LOC107653512 coding upstream 9935 40052151 ~ 40068249 (-)
AMCG00009517 NA coding upstream 63907 40106123 ~ 40118728 (-)
AMCG00009518 LOC103034503,LOC107683000 coding upstream 118006 40160222 ~ 40167501 (-)
AMCG00009520 NA coding upstream 136270 40178486 ~ 40180235 (-)
AMCG00009528 NA coding upstream 415591 40457807 ~ 40472602 (-)
G57400 NA non-coding downstream 156294 39873971 ~ 39874229 (-)
G57379 NA non-coding downstream 223596 39806635 ~ 39806927 (-)
G57354 NA non-coding downstream 441612 39588686 ~ 39588911 (-)
G57351 NA non-coding downstream 442449 39580611 ~ 39588074 (-)
G57244 NA non-coding downstream 947099 39081421 ~ 39083424 (-)
G57524 NA non-coding upstream 117181 40159397 ~ 40159608 (-)
G57545 NA non-coding upstream 297131 40339347 ~ 40343479 (-)
G57596 NA non-coding upstream 679215 40721431 ~ 40777084 (-)
G57600 NA non-coding upstream 890749 40932965 ~ 40933210 (-)
G57858 LOC103374679,LOC100699862,LOC108250355,LOC107390564,LOC106535138,LOC106904453 non-coding upstream 2131042 42173258 ~ 42175707 (-)
AMCG00009472 NA other downstream 1192929 38827965 ~ 38837594 (-)
G57155 dner other downstream 1447703 38580285 ~ 38582820 (-)
AMCG00009437 NA other downstream 2121555 37889502 ~ 37908968 (-)
AMCG00009417 NA other downstream 2554488 37467254 ~ 37476035 (-)
AMCG00009408 NA other downstream 2635535 37285576 ~ 37394988 (-)
AMCG00009521 gigyf2,LOC107728389 other upstream 79247 40121463 ~ 40157471 (-)
AMCG00009571 LOC107087052,LOC105890629 other upstream 1772343 41814559 ~ 41826934 (-)
AMCG00009582 NA other upstream 1998983 42041199 ~ 42056128 (-)
G58025 NA other upstream 2606634 42648850 ~ 42673707 (-)
G58333 NA other upstream 3440205 43482421 ~ 43945297 (-)

Expression


Co-expression Network