AMCG00009525 (LOC106584350,LOC105907042,LOC106599532)


Basic Information

Item Value
gene id AMCG00009525
gene name LOC106584350,LOC105907042,LOC106599532
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40189141 ~ 40203113 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009525
ATGGTGGTCGCGCTCGCGCTGCTGGCGCGGGGGTCCGGCGCGAGAGCCCCCAGCTGCCACGAAGTGAAGACGGCCTTCCAGCTGCGCCAGATCGGGCCCCTCAAATGGGTCCCTGAGAGCCCGGGAGCAGACTTGGATCTGCAGATCTGCAAACACAAAGGGCCCACCTGCTGCACGCGCAAGATGGAGGAGAGCTACCAGGTGGCCGTGCGCCGAGAGACCCTGCAGAACGTCCGCTCCTACAGCTTCGAGCTCAAGTACCTCATCGTGGGCCACGCCACGGCCTTCCAAGGGCACGGGGCCATCAGCTACAGCCCGTGCCTGCCCACCCCCCATTGCCCAGCCCCCTGCCACTCTGCCACTCTGCCACtgcacagccatccaggagaggAAGGGTGGACAGGGTCCTAG

Function

NR:

description
PREDICTED: glypican-5-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009525 True 411 mRNA 0.66 3 40189141 40203113

Neighbor

gene id symbol gene type direction distance location
AMCG00009514 rpp21,LOC107653575,LOC107588084 coding upstream 10091 40172966 ~ 40179050 (+)
AMCG00009515 NA coding upstream 46861 40140469 ~ 40142280 (+)
AMCG00009509 NA coding upstream 116854 40071239 ~ 40072287 (+)
AMCG00009512 NA coding upstream 159681 40028792 ~ 40029460 (+)
AMCG00009510 polr2d,rpb4,LOC106612892,LOC107671669 coding upstream 163702 40022081 ~ 40025439 (+)
AMCG00009524 NA coding downstream 9535 40212648 ~ 40220369 (+)
AMCG00009530 NA coding downstream 209100 40412213 ~ 40420872 (+)
AMCG00009529 NA coding downstream 233214 40436327 ~ 40441597 (+)
AMCG00009526 NA coding downstream 245706 40448819 ~ 40462899 (+)
AMCG00009533 LOC107384019,LOC106568850 coding downstream 404023 40607136 ~ 40608113 (+)
G57523 NA non-coding upstream 29515 40159409 ~ 40159626 (+)
G57457 NA non-coding upstream 155808 40030546 ~ 40033333 (+)
G57428 NA non-coding upstream 246105 39941222 ~ 39943036 (+)
G57401 NA non-coding upstream 313971 39874881 ~ 39875170 (+)
G57378 NA non-coding upstream 382213 39806583 ~ 39806928 (+)
G57544 NA non-coding downstream 136269 40339382 ~ 40343381 (+)
G57597 NA non-coding downstream 625959 40829072 ~ 40829677 (+)
G57599 NA non-coding downstream 729854 40932967 ~ 40933210 (+)
G57690 NA non-coding downstream 1296851 41499964 ~ 41500218 (+)
G57770 NA non-coding downstream 1546442 41749555 ~ 41750144 (+)
AMCG00009516 NA other upstream 84089 40086474 ~ 40105052 (+)
G57430 NA other upstream 239941 39948006 ~ 39949200 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other upstream 752124 39434900 ~ 39437017 (+)
G57105 NA other upstream 1731549 38442255 ~ 38457592 (+)
AMCG00009428 NA other upstream 2572445 37608305 ~ 37616696 (+)
G57604 NA other downstream 787689 40990802 ~ 40994659 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other downstream 1393116 41596229 ~ 41599124 (+)
G57830 NA other downstream 1832905 42036018 ~ 42078241 (+)
AMCG00009647 NA other downstream 3233877 43436990 ~ 43444420 (+)
G58324 NA other downstream 3729839 43932952 ~ 43935762 (+)

Expression


Co-expression Network