AMCG00009530


Basic Information

Item Value
gene id AMCG00009530
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40412213 ~ 40420872 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009530
ATGTTCGCCCGGCACCTCGTACGGCACGACGCCGAATCATGCGGCAGAACAGATTTGAAGCTCTGGGTTAAGAAATATAAGTCAATGCAGAGATTAAAAGCTCAGATGTGTGAGCACCTGCGGATCTGCCCCCAGGGATACACGTGCTGCACCAGCGATATGGAGGAGCGCCTGTCCAATCTGAGCCGGCACGAGTTCGAGGCACTGGTGCAAGAGGCCGGGCGGTCGCTGCAGCTCTCCCTCAGCACCCAGCACACCAACTTCAATGTCTTTGCTAGTTTTAAGGACCGCGGGGACCGTGAAATCGGCTTACCAGCCCCCTCAGGCAGGGTGCAGTGCCGTGGAAATGAGCGTTTGACCTGCCGCGACCCCGCAGGAACTTGGGGGGGCGATCGGCAGGCGTCCCACGTCACTGAGGACAGGTTGGCTTCGCAGTGCTTTCCTCACGGCGTTTCACGACACGTCGCCTCACAGGTCATCGAGTGCAGAAATAAACGGAACAGAAACCGTGCTTGA

Function

GO:

id name namespace
GO:0035622 intrahepatic bile duct development biological_process
GO:0061009 common bile duct development biological_process
GO:0031225 anchored component of membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0043395 heparan sulfate proteoglycan binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009530 True 516 mRNA 0.58 5 40412213 40420872

Neighbor

gene id symbol gene type direction distance location
AMCG00009524 NA coding upstream 191844 40212648 ~ 40220369 (+)
AMCG00009525 LOC106584350,LOC105907042,LOC106599532 coding upstream 209100 40189141 ~ 40203113 (+)
AMCG00009514 rpp21,LOC107653575,LOC107588084 coding upstream 233163 40172966 ~ 40179050 (+)
AMCG00009515 NA coding upstream 269933 40140469 ~ 40142280 (+)
AMCG00009509 NA coding upstream 339926 40071239 ~ 40072287 (+)
AMCG00009529 NA coding downstream 15455 40436327 ~ 40441597 (+)
AMCG00009526 NA coding downstream 27947 40448819 ~ 40462899 (+)
AMCG00009533 LOC107384019,LOC106568850 coding downstream 186264 40607136 ~ 40608113 (+)
AMCG00009534 LOC106599529,LOC105018039 coding downstream 223522 40644394 ~ 40652818 (+)
AMCG00009535 LOC106599529,LOC106568848,LOC103359190,LOC108430182 coding downstream 256981 40677853 ~ 40694380 (+)
G57544 NA non-coding upstream 68832 40339382 ~ 40343381 (+)
G57523 NA non-coding upstream 252587 40159409 ~ 40159626 (+)
G57457 NA non-coding upstream 378880 40030546 ~ 40033333 (+)
G57428 NA non-coding upstream 469177 39941222 ~ 39943036 (+)
G57401 NA non-coding upstream 537043 39874881 ~ 39875170 (+)
G57597 NA non-coding downstream 408200 40829072 ~ 40829677 (+)
G57599 NA non-coding downstream 512095 40932967 ~ 40933210 (+)
G57690 NA non-coding downstream 1079092 41499964 ~ 41500218 (+)
G57770 NA non-coding downstream 1328683 41749555 ~ 41750144 (+)
G57775 NA non-coding downstream 1395049 41815921 ~ 41817795 (+)
AMCG00009516 NA other upstream 307161 40086474 ~ 40105052 (+)
G57430 NA other upstream 463013 39948006 ~ 39949200 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other upstream 975196 39434900 ~ 39437017 (+)
G57105 NA other upstream 1954621 38442255 ~ 38457592 (+)
AMCG00009428 NA other upstream 2795517 37608305 ~ 37616696 (+)
G57604 NA other downstream 569930 40990802 ~ 40994659 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other downstream 1175357 41596229 ~ 41599124 (+)
G57830 NA other downstream 1615146 42036018 ~ 42078241 (+)
AMCG00009647 NA other downstream 3016118 43436990 ~ 43444420 (+)
G58324 NA other downstream 3512080 43932952 ~ 43935762 (+)

Expression


Co-expression Network