AMCG00009535 (LOC106599529,LOC106568848,LOC103359190,LOC108430182)


Basic Information

Item Value
gene id AMCG00009535
gene name LOC106599529,LOC106568848,LOC103359190,LOC108430182
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40677853 ~ 40694380 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009535
GACCACACAGAGTTTAACTCGTCCATGGTGAAGAGCCAGACCAACACCGCTCGCATCGATGGCCTGAGGCCCGGGACCGTGTATGTGGTTCAGGTCCGTGCCAGGACGGTTGCCGGCTTTGGAAAATACAGCGGGAAAATGTGCTTCCAGACTCTGACAGATGACGACTACAAGTCAGAGCTGAGGGAGCAGCTGCCTTTGATCGCCGGCTCCGCGGCAGCTGGGGTCGTGTTCATCGTCTCTCTGGTGGCCATTTCTATCGTGTGCAGCAGGAAGAGAGCCTACACCAAGGAGGCAGTATACAGCGACAAACTCCAGCACTACAGCACTGGCCGAGGCTCTCCAGGGATGAAGATTTACATTGACCCCTTCACCTATGAGGACCCCAACGAGGCTGTCCGTGAGTTTGCCAAGGAAATCGATGTGTCCTGTGTGAAGATCGAGGAAGTAATCGGCGCAGGCGAGTTTGGAGAGGTTTATAAGGGCCGTCTGAAGCTGCCAGGGAAGAGGGAGATCTACGTGGCCATCAAGACGCTGAAAGCGGGCTACTCCGAGAAGCAGAGGCGGGATTTCCTGAGTGAAGCGAGCATCATGGGACAGTTCGACCACCCCAACATCATCCGTCTGGAGGGCGTGGTCACCAAGAGCCGGCCCGTCATGATCATCACAGAGTTCATGGAGAACGGGGCCCTGGACTCCTTCCTCAGGCAAAACGACGGGCAATTCACCGTGATCCAACTGGTGGGGATGATGCGTGGCATTGCGGCCGGGATGAAGTACCTGGCGGAGATGAACTATGTCCACAGGGACCTGGCCGCCCGCAACATCCTGGTCAACAGCAACCTGGTGTGCAAGGTGTCCGACTTCGGCCTTTCACGCTACCTGCAGGACGACACCTCCGACCCCACATACACCAGCTCCCTG

Function

NR:

description
PREDICTED: ephrin type-B receptor 1 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009535 True 924 mRNA 0.57 6 40677853 40694380

Neighbor

gene id symbol gene type direction distance location
AMCG00009534 LOC106599529,LOC105018039 coding upstream 25035 40644394 ~ 40652818 (+)
AMCG00009533 LOC107384019,LOC106568850 coding upstream 69740 40607136 ~ 40608113 (+)
AMCG00009526 NA coding upstream 214954 40448819 ~ 40462899 (+)
AMCG00009529 NA coding upstream 236256 40436327 ~ 40441597 (+)
AMCG00009530 NA coding upstream 256981 40412213 ~ 40420872 (+)
AMCG00009536 LOC104966469,LOC106907045,LOC107600086,LOC103359190 coding downstream 11146 40705526 ~ 40711491 (+)
AMCG00009539 NA coding downstream 360198 41054578 ~ 41067629 (+)
AMCG00009543 NA coding downstream 396669 41091049 ~ 41091910 (+)
AMCG00009541 NA coding downstream 412333 41106713 ~ 41116745 (+)
AMCG00009544 NA coding downstream 422441 41116821 ~ 41117376 (+)
G57544 NA non-coding upstream 334472 40339382 ~ 40343381 (+)
G57523 NA non-coding upstream 518227 40159409 ~ 40159626 (+)
G57457 NA non-coding upstream 644520 40030546 ~ 40033333 (+)
G57428 NA non-coding upstream 734817 39941222 ~ 39943036 (+)
G57401 NA non-coding upstream 802683 39874881 ~ 39875170 (+)
G57597 NA non-coding downstream 134692 40829072 ~ 40829677 (+)
G57599 NA non-coding downstream 238587 40932967 ~ 40933210 (+)
G57690 NA non-coding downstream 805584 41499964 ~ 41500218 (+)
G57770 NA non-coding downstream 1055175 41749555 ~ 41750144 (+)
G57775 NA non-coding downstream 1121541 41815921 ~ 41817795 (+)
AMCG00009516 NA other upstream 572801 40086474 ~ 40105052 (+)
G57430 NA other upstream 728653 39948006 ~ 39949200 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other upstream 1240836 39434900 ~ 39437017 (+)
G57105 NA other upstream 2220261 38442255 ~ 38457592 (+)
AMCG00009428 NA other upstream 3061157 37608305 ~ 37616696 (+)
G57604 NA other downstream 296422 40990802 ~ 40994659 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other downstream 901849 41596229 ~ 41599124 (+)
G57830 NA other downstream 1341638 42036018 ~ 42078241 (+)
AMCG00009647 NA other downstream 2742610 43436990 ~ 43444420 (+)
G58324 NA other downstream 3238572 43932952 ~ 43935762 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015867 ephb1 coding NC_007113.7 CM002886.2 46589798 ~ 46728027 (+)