AMCG00009540


Basic Information

Item Value
gene id AMCG00009540
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40992447 ~ 40994537 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009540
ATGACATTACGATTGGAGACGGTGAAGAGGTGGCAGCTGGAGCTGCATTCTGCTCAGGACTGGTTGCAGTACGAAGTCGGCATCGATGGCTGCAATGTGGTCAAGATTCAGTGTGCCCTGTGCAACAAGCACAAAGCCAAGATCAAAGACCTGCGCAACTTCAGCCCGGCCTTTGTTAACGGCATCGAGGGCAACTCTTTAAAAAAGGACAACGTGAAGAAGCACTTTCAGAGCGAGATGCACCAAAAGGCCTTGGCCCTGGAGAAGCTGAGTGGCAATATCCCCAACCTGCCCTCGGCACTCGCTCAGTCCATCGAAGAGAGCCATCTCACTCGGCTCTTCGATCTCGCCTACACGGTGGCCAAGCTGGAGCTGCCGCTGGCGAAGTTCAAGCAGCTGGCTAAGCTGGAGTTGCGCCACGGGGTGGACTTGGGCCAGACGGCCATCACCGAGCAGAAGTGCAAGGAGTACATCGACTACATCGGCCGGTCCACCAGGACGGAACTCGTGCACGCCATCCAGGAGGCCCCGTACTTCTCGGTTGTGGTCGATGGCTCAGCTGATCCAGGGATGACCGAGAAAGGCATGGTCTATGTGCTGTACGTGGACCGCACCGGTCTGCCCTGCATGCGGTTCTTCGGTTTCCGGGAGGTGGAGCACGTGCATCCAGAGTGCCTGAAGCGGACTGTGCTCAACGCCTTCTTAGAGGAGGGCGTTGACATCGAGCGGAAGCTGGTGGGCTACATGGCAGATGGCAGCACTGTGAAGGCGGACATTACTGCTCTCCTGCAGAAGGATATGCCTTATCTCATCTCCCTCAGCTGCGTGAGTCATCGCCTGGAGATGGCCCTCAAGGAGATGTTCCACGGCACCAGTTTCGACAACGTCAATGAAATGCTCCTCCTCCTGGGCAAGCTGTACTGGACCTGCCCCAGTCGCATGCACGAGCTGAAGACCCTGGCGCAGGTAATGCTGGAAGCCGAGACCAAGCCCCATCAGGCTGAAGGAACCCGCTGGGTGCAACACAAGCAGCGCGCCACCAGGGCTCTGCTGCAGGCATACCCAGCAGTTGTCTGTAACCTGACCAACATGTCTGCCCAAACAGCCCTGCCCAAAGAGAAGACCATCTTCCAGGAGTACCTGAGGACCCTGCGGAGCCTCAACTTTGTCCTTCACTTGCTCCTCTTCTCTGAGATGCTGGAGCCCATCGCCAAGCTGTCCCGTTCGTTGCAAAATAGCAACGTGGACCTAGTGTACACCGCCTCTCTGCTGGAGAAGTTCTACAGCACCCTGGCACGCTTCAGCATGGGCATTCTCCACGGCTCCCTCCACGAGCTGTTGGACGACATGGCGAAGGACCCCCAGTCAGTTTACTTCAGCGGCACCCGATTGCAGTGTGAAGCAGAGGCAGCCCAGGCGTTCAAGGATAAGCTTCCAACGTACGTGGCTGCAGTGTCCGGCTGTATCCTCCAACGCTTCGGGGCCCTACATCAAATGGAGCCCATCCGCTGCCTGAAGATCTTGGAGGCTGACCTGTGGCCTGAAACCAAGGAAGACATGGAGAACTTCGGCAACGCAGAGCTTCAGATATTCTGCCGCCACTTTGCCAAGCTCCTGTCACTCAACCAGGTGGACATCACCAAATTGCTGGAGGAGTGGGAGCAGTTCAAGCAGCTCCGCTCCTCGTGCCTGGCTGAGCTCTCCAGTCAACAGATGTGGCAGAATATTTTGACCAGAGAGCGGGCACGCTTTCCCAACTTCTACCATGTCATCCACATCCTCCACTGCTTTCCCGTGTCCAGCGTGGTGCTGGAGTGGGGCTTCTCCGCTGTAGCCCGCCTGAAGGCCGAGAGCAGGGGCAAGATGTCCATCAGCACCCTGGAGTATCTGACCAGGATCTCGGTGGAGGGCCCTGAACCGGATGTCTATGATCCCCAGGCTGCTGTCAGCCTGTACTGTTTTGAGCAGATGGGCTTCATCTCTGAGCCTGCTGTCAAAAGATCATCCATGTGTGCGTTCCTGGGTGAAGAGCCTAGTTCTCCAAATAAAAAGGCCTGCTTAACTCCTGAGGAGTACAGCAGTGACGGATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009540 True 2091 mRNA 0.57 1 40992447 40994537

Neighbor

gene id symbol gene type direction distance location
AMCG00009538 NA coding downstream 140881 40833364 ~ 40851566 (-)
AMCG00009537 NA coding downstream 159180 40759895 ~ 40833267 (-)
AMCG00009532 NA coding downstream 496560 40495199 ~ 40495887 (-)
AMCG00009531 NA coding downstream 499195 40481676 ~ 40493252 (-)
AMCG00009527 NA coding downstream 512380 40472636 ~ 40480067 (-)
AMCG00009546 NA coding upstream 139777 41134314 ~ 41137031 (-)
AMCG00009547 NA coding upstream 145903 41140440 ~ 41155910 (-)
AMCG00009548 NA coding upstream 165362 41159899 ~ 41167236 (-)
AMCG00009545 NA coding upstream 176777 41171314 ~ 41175326 (-)
AMCG00009549 sox14,LOC107679857,LOC103365676,LOC107756185,LOC107713406,LOC100695210,LOC107593189 coding upstream 259285 41253822 ~ 41254538 (-)
G57600 NA non-coding downstream 59237 40932965 ~ 40933210 (-)
G57596 NA non-coding downstream 215363 40721431 ~ 40777084 (-)
G57545 NA non-coding downstream 648968 40339347 ~ 40343479 (-)
G57524 NA non-coding downstream 832839 40159397 ~ 40159608 (-)
G57400 NA non-coding downstream 1118218 39873971 ~ 39874229 (-)
G57858 LOC103374679,LOC100699862,LOC108250355,LOC107390564,LOC106535138,LOC106904453 non-coding upstream 1178721 42173258 ~ 42175707 (-)
G57873 NA non-coding upstream 1210733 42205270 ~ 42205559 (-)
G57982 NA non-coding upstream 1473648 42468185 ~ 42468759 (-)
G57988 NA non-coding upstream 1483184 42477721 ~ 42478112 (-)
G57998 NA non-coding upstream 1544902 42539439 ~ 42540113 (-)
AMCG00009521 gigyf2,LOC107728389 other downstream 834976 40121463 ~ 40157471 (-)
AMCG00009472 NA other downstream 2154853 38827965 ~ 38837594 (-)
G57155 dner other downstream 2409627 38580285 ~ 38582820 (-)
AMCG00009437 NA other downstream 3083479 37889502 ~ 37908968 (-)
AMCG00009417 NA other downstream 3516412 37467254 ~ 37476035 (-)
AMCG00009571 LOC107087052,LOC105890629 other upstream 820022 41814559 ~ 41826934 (-)
AMCG00009582 NA other upstream 1046662 42041199 ~ 42056128 (-)
G58025 NA other upstream 1654313 42648850 ~ 42673707 (-)
G58333 NA other upstream 2487884 43482421 ~ 43945297 (-)
AMCG00009672 NA other upstream 2994974 43989511 ~ 43995654 (-)

Expression


Co-expression Network