AMCG00009546


Basic Information

Item Value
gene id AMCG00009546
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41134314 ~ 41137031 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009546
ATGCTGGGCATGCGGTCAGATCTGCTGATGTCATTTCAGGGGATGTCGGCCGTGACGGCCCAGCCGGTTCCCTTCAggctgctggagagagagaggcacatcGAGTCTCTGTTCAGGGCCTTCCGTGGAGGACAGCCCCGGCACAGTGGTATCAGTCGCTCCCTGGGGCATGGGGTCTCTCCCAGGCTCACGGGCTCCGAAGACCATGGCCGGGGACAGGAACGTGACAGGAAAGCCAGTCGGGCAGGGGCGGGAGGGGTGGCTGCTCTGGAGCTACGGTACCTGAAGGAGACGGAGCTGCAGGCTGGCCTCTCTGCGGCATCAGAACCAGAGGGTGCTGGAGGTCCCAGTGGACAAGGCCTGGAGCTGCTGGAGAGAGTGAGCCAGCTCTGCATCACTGCCAGGCCGGAGCTGCAAGGTCCACAGTGTGAGCCCGGGAGGTCCTACAGCATCTCCTCAAGATCCCTGAGTCAGTTGTATGTAGCTGTTGAAGAGAGCACATGCCTCTGTCTCCAGTGCTGCGGTCCCGCCCGGTCATGCTCTCTCCGGGGCTACAACAGACAGGCCCAGGAGGTCTTCCTGTTCGAGAGGCCCCTGAGAGTGGATGCCTGCTGTCTAGGCTGCTGTCTGATGGAAATGAGGGCCTTCACGGCGGACCAGCAGCTGATTGGCACCGTGTGCCAAAGATGGAGCATGTTCACCCCTCTCCTGGAAATCCGTGACTCTGATGGGACTTCCCCCATCCGAATCCAGGGCCCCTGCTGTCCCTGCCGCTGCTATTCCAACCAGGAGTTTCAGGTGGTGTCCAAAATTGGAGACAAGCTGGGCAAGATATGGAAAAAATGGCCTGGTTTCAATGAAGACTACAACATGGACCATGAATACTTTGGGATAGATGTGCCTCTGGAAATGAGTCCCAAAACTAAAGTGCTGGTGCTGGCTGCTGCTTTCTTGTTG

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009546 True 957 mRNA 0.59 6 41134314 41137031

Neighbor

gene id symbol gene type direction distance location
AMCG00009540 NA coding downstream 139777 40992447 ~ 40994537 (-)
AMCG00009538 NA coding downstream 282748 40833364 ~ 40851566 (-)
AMCG00009537 NA coding downstream 301047 40759895 ~ 40833267 (-)
AMCG00009532 NA coding downstream 638427 40495199 ~ 40495887 (-)
AMCG00009531 NA coding downstream 641062 40481676 ~ 40493252 (-)
AMCG00009547 NA coding upstream 3409 41140440 ~ 41155910 (-)
AMCG00009548 NA coding upstream 22868 41159899 ~ 41167236 (-)
AMCG00009545 NA coding upstream 34283 41171314 ~ 41175326 (-)
AMCG00009549 sox14,LOC107679857,LOC103365676,LOC107756185,LOC107713406,LOC100695210,LOC107593189 coding upstream 116791 41253822 ~ 41254538 (-)
AMCG00009553 NA coding upstream 280720 41417751 ~ 41425073 (-)
G57600 NA non-coding downstream 201104 40932965 ~ 40933210 (-)
G57596 NA non-coding downstream 357230 40721431 ~ 40777084 (-)
G57545 NA non-coding downstream 790835 40339347 ~ 40343479 (-)
G57524 NA non-coding downstream 974706 40159397 ~ 40159608 (-)
G57400 NA non-coding downstream 1260085 39873971 ~ 39874229 (-)
G57858 LOC103374679,LOC100699862,LOC108250355,LOC107390564,LOC106535138,LOC106904453 non-coding upstream 1036227 42173258 ~ 42175707 (-)
G57873 NA non-coding upstream 1068239 42205270 ~ 42205559 (-)
G57982 NA non-coding upstream 1331154 42468185 ~ 42468759 (-)
G57988 NA non-coding upstream 1340690 42477721 ~ 42478112 (-)
G57998 NA non-coding upstream 1402408 42539439 ~ 42540113 (-)
AMCG00009521 gigyf2,LOC107728389 other downstream 976843 40121463 ~ 40157471 (-)
AMCG00009472 NA other downstream 2296720 38827965 ~ 38837594 (-)
G57155 dner other downstream 2551494 38580285 ~ 38582820 (-)
AMCG00009437 NA other downstream 3225346 37889502 ~ 37908968 (-)
AMCG00009417 NA other downstream 3658279 37467254 ~ 37476035 (-)
AMCG00009571 LOC107087052,LOC105890629 other upstream 677528 41814559 ~ 41826934 (-)
AMCG00009582 NA other upstream 904168 42041199 ~ 42056128 (-)
G58025 NA other upstream 1511819 42648850 ~ 42673707 (-)
G58333 NA other upstream 2345390 43482421 ~ 43945297 (-)
AMCG00009672 NA other upstream 2852480 43989511 ~ 43995654 (-)

Expression


Co-expression Network