AMCG00009547


Basic Information

Item Value
gene id AMCG00009547
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41140440 ~ 41155910 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009547
TCCTGGGCTCGAAATCAAGAGGAGCGCCTCATCAACCACTTGTTCAAGGAGCGTGCTTACAACAAGGAGCTGCGGCCGGTCAAAAACAAAGACGATGTTGTGGATGTCTACCTGGCTCTCACGctctccaacctcatctctctcGGTTGGTATGATCACAGGCTGTCGTGGAACGCCAGTCTGTTTGACGACATCGAAgtcctgcacctgccttcccagctCGTGTGGCTCCCAGAGATTGTCTTGGAGAATAAGCAAGTATTCCCTGTACATAATGAAGGAAGATGTTATATGGAGGCCCTTCTCAATGACGCCCAGTTTCAGGTGGCCTACTACTGTAACGTCCTGGTCTATCCTGATGGATTCGTGTACTGGCTTCCCCCCGCAATCTATCGCAGTTCCTGTGCCATCAATGTGAACTTTTTCCCCTTCGACTGGCAGAACTGCACTCTGAAGTTCAGGTCCCTGACTTACAATGCCAAGGAGATTAGTATGCACCTGAAAGTGGATACAGACCTGGAAACAAACAGGAATTTCCCAGTCGAGTGGATTATCATTGACCCTGCTGGGTTTACAGAAAATGGTGAGTGGGAGATCATCCACAAACCCGCCAGGAAGAACATTCACAAGGAGGTTCCCCTGGACAGCAACAAACACCAAGACATCACCTTCTACCTCATCATCAAGCGCAAGCCTCTCTTCtacatcatcaacatcatcattcCTTGCATCCTCATCTCCTTCATGGCTTCCCTCGTCTACTACCTCCCAGCAGACAGTGGGGAGAAGATGACCCTGTCTATCTCCGTGCTCCTCGCTCAGTCTGTCTTTCTGCTTCTGGTGTCTCAGCGTCTACCCGAGACATCCCTCGCCATCCCCCTCATTGTTAGGTATCTCATGTTCATCATGGTGCTGGTCACGGTGGTGGTGCTGAACTGTGTGGTCGTGCTCAATCTGCACTTCCGGACGCCCAGCACTCATGTCATGTCTAAATGGACCAAAAAGTTCTTCCTGGAGAGGCTGCCGCGGATCCTGCACATGTCACAGCCGGCGGAGAGTGAGGCAAGCTGGGAGGGGGCCCTGCAGCGGCGCTCCAGCTCCGTCGGGTACATCGCCAAGGCGGACGAGTACTACAGCGTCAAGTCCCGCAGCGAACTGATGTTCGAGAAGCAGTCCGAGAGGCACGGGATGACCGCCAGGGCCACTCCGGCCGCAGTTTACAAATCGAACACAGAGGGCGAAGTCGCCGATCAGCTGTACGCCGAAATCAAACCCGCGGTGACCGGTGCCAATTACATCGTCAAGCACATGCGGGAGAAAAACGACTACAATGAGGAGAAGGACAACTGGAGTGGCATTGCCCGGACGGTGGACCGGCTGTGTTTCTTCGTCGTGACCCCCATCATGACCCTCGGGACCATGTTCATATTCCTGTCTGGGATTTACAACCACCCGCCTCCTCTGCCCTTCGAGGATGATGCGCCTACTGAAGAGAGGCTGCTGAAGGACATGATGACAGGCTACAACAAGAACATCCGCCCCGTGGAGAAGGACGGGGACGTCACCCAGGTCACACTGAAACTGACCCTCACTAACCTCGTCTCACTGAATGAACGAGAAGAGGCTCTCATGACCAACGTCTGGATCGAAATGCAATGGTGTGACTATCGGCTGAAATGGAACACCTCTCTGTACGACGGCATCGACATCATCAGAGTCCCCTCCAAAAGCATCTGGCTGCCCGACATCGTGCTGGAGAACAACGTTGATGGCAAATTTGAGATCACTCTTTACACCAACGCCCTCATTGACTCCTCCGGTTGCATCTACTGGCTTCCGCCTGCCATCTACCGCAGTGCCTGCTCCATCAAAGTCACTTACTTCCCCTTTGACTGGCAGAACTGTTCCATGGTTTTTCGCTCGCAAACGTACAGCGCCAATGAGATTGACCTTGTCTTGACAAACGAAGAAGGTCGGACCGTTGAATGGATCGTGATCGACCCAGAAGCCTTCACAGAGAACGGGGAATGGGCGATCAAGCACAGACCAGCCAAGAAGCTCATCAACAGCCACTACAGCAAGGACGACCTCGAGTACCAGGAGGTGATCTTCTTCCTCATCATCCAGAGGAAGCCACTCTTCTACATCATCAACATGATCGTGCCTTGTGTGCTCATCTCTTCCCTGGGGCTTCTGGTCTACTTCCTGCCTGCTAAAGCGGGCGGGCAGAAGTGTACGATGTCTATCTCCATCCTCCTTGCACAGACTGTATTCCTCTTCCTCATCGCCCAGAAGGTACCTGAGACCTCCCAGGCTGTGCCCCTCATTGGGAAGTTTCTGATGTTTGCAATGACAGTGACCACCATCGTGGTGATGAACTGCGTCATTGTGCTCAATGTGTCTCTCCGGACACCCAGCACCCACATCATGACCAATGATGTCAGACAGATCCTCCTGAATTTCGTGCCACGTCTCCTGAGAATGCAGATGAGTCTCTGGTCCCCAAAGGATGCCCAGCCATGCCCGACCTCTCGGCGCCGGAGCTCCCTGGGCTTGATCGCCAAGGCGGACGAGTACGTGCTGAAGACGGCGCGCACCGAGCTCATGTTCAGACAGCAGATCGCAAGAGAGGGGCTCATGAAGTCTGTGCTGCAGAAGATCCAAAATGGTCTGGAGGGGGGCACAGTTCAAGACCTAAGCAACAGCCTGGCACAAGCCAGCCCGGAGGTGCGCCAGTGTGTGGCATCCTGTAACCATATTGCCACCAGTATCCAGAAGCAAAATGACTTCCAGAACGAGAATGAAGAATGGTTCCTCGTGGGCAGAGTGGTTGACAGGGTGTGTTTCTTGGTGATGGCATTGCTTTTTGCCCTCTCTACTGTCGGCATATTCCTCATGGGACACTTTAACCAAGCGCCTTCCACACCCTTCCCTGGAGATCCCAATAGATACCTGCCT

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0007271 synaptic transmission, cholinergic biological_process
GO:0006812 cation transport biological_process
GO:0007165 signal transduction biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0030054 cell junction cellular_component
GO:0015464 acetylcholine receptor activity molecular_function

KEGG:

id description
K04818 CHRNG; nicotinic acetylcholine receptor gamma

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009547 True 2958 mRNA 0.53 22 41140440 41155910

Neighbor

gene id symbol gene type direction distance location
AMCG00009546 NA coding downstream 3409 41134314 ~ 41137031 (-)
AMCG00009540 NA coding downstream 145903 40992447 ~ 40994537 (-)
AMCG00009538 NA coding downstream 288874 40833364 ~ 40851566 (-)
AMCG00009537 NA coding downstream 307173 40759895 ~ 40833267 (-)
AMCG00009532 NA coding downstream 644553 40495199 ~ 40495887 (-)
AMCG00009548 NA coding upstream 3989 41159899 ~ 41167236 (-)
AMCG00009545 NA coding upstream 15404 41171314 ~ 41175326 (-)
AMCG00009549 sox14,LOC107679857,LOC103365676,LOC107756185,LOC107713406,LOC100695210,LOC107593189 coding upstream 97912 41253822 ~ 41254538 (-)
AMCG00009553 NA coding upstream 261841 41417751 ~ 41425073 (-)
AMCG00009557 NA coding upstream 342201 41498111 ~ 41501769 (-)
G57600 NA non-coding downstream 207230 40932965 ~ 40933210 (-)
G57596 NA non-coding downstream 363356 40721431 ~ 40777084 (-)
G57545 NA non-coding downstream 796961 40339347 ~ 40343479 (-)
G57524 NA non-coding downstream 980832 40159397 ~ 40159608 (-)
G57400 NA non-coding downstream 1266211 39873971 ~ 39874229 (-)
G57858 LOC103374679,LOC100699862,LOC108250355,LOC107390564,LOC106535138,LOC106904453 non-coding upstream 1017348 42173258 ~ 42175707 (-)
G57873 NA non-coding upstream 1049360 42205270 ~ 42205559 (-)
G57982 NA non-coding upstream 1312275 42468185 ~ 42468759 (-)
G57988 NA non-coding upstream 1321811 42477721 ~ 42478112 (-)
G57998 NA non-coding upstream 1383529 42539439 ~ 42540113 (-)
AMCG00009521 gigyf2,LOC107728389 other downstream 982969 40121463 ~ 40157471 (-)
AMCG00009472 NA other downstream 2302846 38827965 ~ 38837594 (-)
G57155 dner other downstream 2557620 38580285 ~ 38582820 (-)
AMCG00009437 NA other downstream 3231472 37889502 ~ 37908968 (-)
AMCG00009417 NA other downstream 3664405 37467254 ~ 37476035 (-)
AMCG00009571 LOC107087052,LOC105890629 other upstream 658649 41814559 ~ 41826934 (-)
AMCG00009582 NA other upstream 885289 42041199 ~ 42056128 (-)
G58025 NA other upstream 1492940 42648850 ~ 42673707 (-)
G58333 NA other upstream 2326511 43482421 ~ 43945297 (-)
AMCG00009672 NA other upstream 2833601 43989511 ~ 43995654 (-)

Expression


Co-expression Network