AMCG00009548


Basic Information

Item Value
gene id AMCG00009548
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41159899 ~ 41167236 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009548
ATGTTGCTGCTCGCTCTGCTGCTGATTTTGGACTGCACTTCTGCTGCACCTACAGGCAGGGAGGTCTACAGACTGCCCCAAAGCGCTCTGCAAGGCCTATCGGAGCGTGGCACTGTGGTGCTGGAGGCGGCCCTGACCAGCGCCCTGTCCGCCCTGGAGCTGGCCGTGTCGGAGCACAGCCGGGCTGAGCTGGGCTGTGGGGGCTGTACTCCGTGTCTCTTTCAGGACTGTGGACAGCGCAGTGGCCCCTGTGCCCATGTGGATGTGCCTTCGGAGCCCAGCTGCGAGGTGATTGCCCAAGCCCAGAGGCAGCCGGATGAGAGGGATCGCAACTGGGCGCTGAGCCAGGCCTGTGGGTACTACCAGCGACGGTGCCATGCTGAAGAGGTGGGCAAAGAGAGCTGTGTCCGGATCATGGGCGAGAGCTGCAGTGCCCGCGTCCTCCAGTGCAGTTTGCTGAACACCATGCAAAACTTGGAGCCGGTGGCAGAGAGCAAGAGTCAAGGTAAATCAGTCTTATATACAGTCTGTAACCAGCGATGGCGCTACACGTTCTGCCTCCTGTCTCTTCTGAACATTAACCGGGCTGGTTCTCGTCTCTTGGCAGTGTGTGGCCGGAAGTCGGTGGCCATGCAGAATGTCACCCAGCCTCGCTCCAGGATTGTGGGGGGCTCTCAGGCCTCCCCCGGCAGTTGGCCCTGGTTAGTCAATCTGCGGCTGGATGGCGAGCTCATGTGCGGGGCAGTGCTGGTGGACAGCTCTTGGGTGTTGACGGCTGCGCACTGCTTTACGGGgAGCCGCAGTGAGAATTATTGGACCGCAGTGGTGGGGGAGTTTGACATCACAAAGACGGACCCTGAGGAGCAAGTCATGAAGGTCAACCGCATCGTCACTCACCCCAAGTTCAACCAGAAGACCTTCAACAACGACATCGCCCTGGTAGAGCTGACGTCTCCTGTTGCGCTCTCTGATCAAGTGACCCCAATTTGCCTGCCCTCAGGTGAAGAGCCCGCTGTGGGGACGCCTTGCTCTGTGGCTGGCTGGGGCTCACTGTATGAGGACGGCCCCTCTGCCGATGTGGTGATGGAAGCCAAGGTGCCCATTCTGTCTCAGGGCACCTGTAAAAGTGCCCTGGGCAAGGAGCTGGTCACCAACACCATGTTCTGTGCCGGCTACCTGTCTGGCGGCATCGACTCCTGCCAGGGGGACTCGGGGGGCCCGTTGACCTGCCAGGACCGCGTCTCTGGGCGTTTCCAGTTGTACGGTATCACATCCTGGGGGGACGGCTGCGGGGAGAAGGGGAAACCCGGGGTGTACACCCGAGTCACGGCCTTCTCTGACTGGATCCACAGTGAGATACAGAAGTCCACTGGCAGCCGGGAGCCCACCTGCCCAGAGCTGCTGCAGACGTCCGAGCTCTCCGAGGAGCAGCAGAGGTCGGAGTTCAGTACCTTGTGCCGCTTTTACACCCACTCCTGCCCGCCCTCACTGGGCACGGCCGCCTGCACCCGCCTGGCTGAGGACAAGTGCCGCACCCGCTACAAGAAGTGTCAGCTGCGGTCGTTCCTGCAGACCCTGCTGGACCTCCTGCAGCGCGCGGAGGAGTATATCCGAGACAAGGTGGACCTGACCTTCTTCACGCAGACGTTGCCTCGGCTGGTCGAGCACATCTACAGCACCGCCTTCCCCTCCCGGCAGCGCAGACGGGCCTCGCTCGAGACAGGTACAGAACTGGACGTGGGACCCCTTGTTGAGGACTGGGCCACATATCTGAGAAGAATCGCAGAGGATCTGGACAACCAGCCCGCTTTGCAGGGCCTGAAATCTCTGCAGCAGGAGAAGAGCCTCTTTCTACAGGCTGAGGCCCCCGCTCTTCCCACGCTGGAGGGACAATACCGCTCCCTGATCAAGATGCTCCACGCCAAGCTCGGCTCTGGGGTCCCCAGTTCGATCACAGACCAGAGCACGGGTCCTACACGAGACACTACAGTGGCAGAGCAGACCACCATTCCCGCCAGGACTCCCCCGCTCACCGCATCCCCCAAGATCAAGGGATCCGTCCTCACAACTTCACCACGAGGACTCCCAGCTGGAGAGCGAGCCAGAGCCGCGTCTCGGGGATCTGGCCTGGCGCGCGCGACGTCTCCGTCTGAAATCTACCGACGCGGTGTGACCAGAGAGTCCACCTTGGAATACAGACCCACTTCATCTGCCTCTTCATCGTCGTCTTCCTCTGACCCTGATATTCCTGTTGGAAGAGGATCGACCGTTTTCTCCTCTGTCCCTGCCTGGCCTAGTCCCGCTCTGCCACAGCAGGCCACGGACCCCACTTCCACAAAACCATCAGAGACAGTCTACCAGCGGCGCCGAGGCCTGCGAAAGAGACGGGCGTCCGGAACAAACCACGAAGTGTGCCCTGGAGTGAGCGAGACCTCGCAGCAGGTCAGTATGGTCAAGGAGATGTACCACTGGATCCTGGGCATCCCTATCAAGAACCTCTGCATGACTTTCCAAGAGGTACTGGTGGACCTCGCGTCCAAGAACGAGAGAGGTCTGTACGAGGCGCGGGTCCGGGCCACGGTGGGAGGACAGCCCCTCACCTTCTATAGCCTAGTGGGCCTGGAGAGTGAGTCGTTCTACCGCAGCATGCCGCGGGTCATCGCCCTGGCGCTGGAGGCCCTCAAGACGTAA

Function

GO: NA

KEGG:

id description
K23440 PRSS56; serine protease 56

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009548 True 2691 mRNA 0.61 15 41159899 41167236

Neighbor

gene id symbol gene type direction distance location
AMCG00009547 NA coding downstream 3989 41140440 ~ 41155910 (-)
AMCG00009546 NA coding downstream 22868 41134314 ~ 41137031 (-)
AMCG00009540 NA coding downstream 165362 40992447 ~ 40994537 (-)
AMCG00009538 NA coding downstream 308333 40833364 ~ 40851566 (-)
AMCG00009537 NA coding downstream 326632 40759895 ~ 40833267 (-)
AMCG00009545 NA coding upstream 4078 41171314 ~ 41175326 (-)
AMCG00009549 sox14,LOC107679857,LOC103365676,LOC107756185,LOC107713406,LOC100695210,LOC107593189 coding upstream 86586 41253822 ~ 41254538 (-)
AMCG00009553 NA coding upstream 250515 41417751 ~ 41425073 (-)
AMCG00009557 NA coding upstream 330875 41498111 ~ 41501769 (-)
AMCG00009561 yeats2,LOC107578903 coding upstream 348252 41515488 ~ 41542000 (-)
G57600 NA non-coding downstream 226689 40932965 ~ 40933210 (-)
G57596 NA non-coding downstream 382815 40721431 ~ 40777084 (-)
G57545 NA non-coding downstream 816420 40339347 ~ 40343479 (-)
G57524 NA non-coding downstream 1000291 40159397 ~ 40159608 (-)
G57400 NA non-coding downstream 1285670 39873971 ~ 39874229 (-)
G57858 LOC103374679,LOC100699862,LOC108250355,LOC107390564,LOC106535138,LOC106904453 non-coding upstream 1006022 42173258 ~ 42175707 (-)
G57873 NA non-coding upstream 1038034 42205270 ~ 42205559 (-)
G57982 NA non-coding upstream 1300949 42468185 ~ 42468759 (-)
G57988 NA non-coding upstream 1310485 42477721 ~ 42478112 (-)
G57998 NA non-coding upstream 1372203 42539439 ~ 42540113 (-)
AMCG00009521 gigyf2,LOC107728389 other downstream 1002428 40121463 ~ 40157471 (-)
AMCG00009472 NA other downstream 2322305 38827965 ~ 38837594 (-)
G57155 dner other downstream 2577079 38580285 ~ 38582820 (-)
AMCG00009437 NA other downstream 3250931 37889502 ~ 37908968 (-)
AMCG00009417 NA other downstream 3683864 37467254 ~ 37476035 (-)
AMCG00009571 LOC107087052,LOC105890629 other upstream 647323 41814559 ~ 41826934 (-)
AMCG00009582 NA other upstream 873963 42041199 ~ 42056128 (-)
G58025 NA other upstream 1481614 42648850 ~ 42673707 (-)
G58333 NA other upstream 2315185 43482421 ~ 43945297 (-)
AMCG00009672 NA other upstream 2822275 43989511 ~ 43995654 (-)

Expression


Co-expression Network