AMCG00009552


Basic Information

Item Value
gene id AMCG00009552
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41476537 ~ 41479996 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009552
GCGCATAAAGGGAGTTCTATGCAGTCATCTGCGTTTCATGTGGATGGCTCTCATGGGCCTAACCGTGCTCTGTGTAACTATTCAGATACTGGGGGTGGCCCGACAATCCAGaaatgaCAAGGTTCTGAAGCAGTTTGCCAACAAGAAGTTTTTGAACATGAGGTTCAAGTTTGAATTCCAAAAGACGATGACAACCACACAGCAGGGGATCGAAGTGCCTCCTGACAAGTTTCCGTTTATAAAACACACCCAGCATCGGAGCAGGGAAACCACTCTGAACGAGGGACAAACCAAAAGAACTGAAAAACTCAGACATGGCAATAACACCACTAAGGAAGCGGAGAGCTTGATGGATTCACCTCCTCCTGTAACGCAAGATGATTCCCGACCTATCATATCGGTGCAGATTTTCAGTCCAACGCAACAGGCCATTCGTCCAATCAAAAAAAGCACGACAGCTATGACCCCGGAGAAGCCAAAAGAACTCAAAAAGGAAACAACTGCAGCTCGTGGTGAAGGCATCGTCAAGACAAGCCTTAGGTCAAGTTTAGGAAGTAATGGCATGAAGTATACAGGACCTCTAAAATCCACTGACCCCAATACCAGTGAGTTACCCTTTCAACCAGGATCATTGGTCAGACCACTTGAGCGGAAAGTGACCCTAAGACAGGTTGTTAGCCATTCagccaagaaaaacaagacGGTGTCTTCAAGGGTGCCAACAAAAACATTGTCCTCCATATCAGTGCAGGCCTCAGATGACCATTTCCCAGCATCTTTAGTCATAAATCcaaagaaagataaaatgttGCAAACAAAGGTCCTACACTCACAAGCATCTGTCTTTTCTGCAGCTACTTCTGTTCAACAAAACCTGCTTTCAAAAAACAGTTCCACAATGATAAAATCCACTGCTTTAAAACCAGACAGGGGAGTGGTATCCACTTGCCAGGCAAAGACACACATCGTGTTcctcaaaacacacaagacagcCAGCAGTACCATCCTTAACATTTTGTACCGGTTTGGAGACAGCAGAAACCTCACATTCGCTCTCCCCCTGAGCAGACACAATCAGCTGTTTTACCCGCTGTATTTTGCGGCTCCCTTTGTTGAAGGATTCAGGTCAAAGACCGTGAAGGGATATGACATTATGTGCAACCACATGAGGTTCCTGGCATCGGAGGTGAAGAAGGTCATGCCTCAAGATTCCTTCTACTTCTCCATTCTTCGCAACCCAATCACCATGATGGAGTCCATTTTCTCATATTACAAGAGCATTCCTTCATTCAACAAGGTACAAAACCTGGACGAATTCCTTACGAGCCCATGGCAGCACTACAACGCCAGCTTGACCAACAACCATTATGCCAAAAACCTGTTGACGTTCGATTTTGGCTTCAATAACAATGGCAACGATAGCCAGAGATACACTAACATGACCATCGTCATGATAGAGCAGAAATTCCACCTGATCTTGATCTCCGAGTACTTTGATGAGTCCATGATCCTACTGAAGAATGCTCTCTGCTGGACACTGGATGATGTGGTCTCCTTCAAGCTCAACAGCAGGAGCAACAAGACCAGGAAGGAACTGTCCCCTCAGGCCATGGAAAAGATAAAGCAGTGGAACTCCCTGGACTGGAAGATCTACATGCATTTCAACGCCACCTTCTGGAGGAGAATCGACGAGACGATGGGACGGGATGAAATGAAGCAAGAAGTGGCACGCCTTcaggagaggaggaggcagCTGATGAAGACATGTTTGCAGGAAGGAGGGGCTGTGGACCCTTCACAGATCAAAGACACCTCCCTGAAGCCCTTTCAGTACGGTGCCTCAGTCATTCAGGGATACAACCTCAACCCCCACCTGGACCCAGTGACCAGAAAATGGTGTCAGAGCCTCATCACACCTGAGCTGCAGTACACAGTCGTATTATATGACAAACAGTTTCCAGATTTAGCAGCCAAGCTGACTGCCACTGAAAATCGGTCAAGTAGAGACCAGGCCAGGACCAACCACTCAAGGAACTGGGAATCCAAAAAGGCCTTGACTAGTCAGAGACGGAATAATCAGTACGGGCCAAGAAATCATGTCCGTGTTCTTTACCAGAAAGACTTGACCAACTGGACTACACCAAGCAGCTTACAAAATGTGCCT

Function

GO: NA

KEGG:

id description
K09675 GAL3ST2; galactose-3-O-sulfotransferase 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009552 True 2164 mRNA 0.47 3 41476537 41479996

Neighbor

gene id symbol gene type direction distance location
AMCG00009550 NA coding upstream 41338 41433263 ~ 41435199 (+)
AMCG00009551 NA coding upstream 62462 41405896 ~ 41414075 (+)
AMCG00009542 eif4e2,LOC107730458,LOC107692895 coding upstream 344423 41123722 ~ 41132114 (+)
AMCG00009544 NA coding upstream 359161 41116821 ~ 41117376 (+)
AMCG00009541 NA coding upstream 359792 41106713 ~ 41116745 (+)
AMCG00009555 NA coding downstream 5234 41485230 ~ 41498805 (+)
AMCG00009554 NA coding downstream 24998 41504994 ~ 41509847 (+)
AMCG00009562 NA coding downstream 80392 41560388 ~ 41568832 (+)
AMCG00009556 NA coding downstream 106670 41586666 ~ 41588754 (+)
AMCG00009564 NA coding downstream 198556 41678552 ~ 41683695 (+)
G57599 NA non-coding upstream 543327 40932967 ~ 40933210 (+)
G57597 NA non-coding upstream 646860 40829072 ~ 40829677 (+)
G57544 NA non-coding upstream 1133156 40339382 ~ 40343381 (+)
G57523 NA non-coding upstream 1316911 40159409 ~ 40159626 (+)
G57457 NA non-coding upstream 1443204 40030546 ~ 40033333 (+)
G57690 NA non-coding downstream 19968 41499964 ~ 41500218 (+)
G57770 NA non-coding downstream 269559 41749555 ~ 41750144 (+)
G57775 NA non-coding downstream 335925 41815921 ~ 41817795 (+)
G57792 NA non-coding downstream 359169 41839165 ~ 41839466 (+)
G57843 NA non-coding downstream 605283 42085279 ~ 42088145 (+)
G57604 NA other upstream 481878 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 1371485 40086474 ~ 40105052 (+)
G57430 NA other upstream 1527337 39948006 ~ 39949200 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other upstream 2039520 39434900 ~ 39437017 (+)
G57105 NA other upstream 3018945 38442255 ~ 38457592 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other downstream 116233 41596229 ~ 41599124 (+)
G57830 NA other downstream 556022 42036018 ~ 42078241 (+)
AMCG00009647 NA other downstream 1956994 43436990 ~ 43444420 (+)
G58324 NA other downstream 2452956 43932952 ~ 43935762 (+)
G58522 NA other downstream 2906501 44386497 ~ 44407568 (+)

Expression


Co-expression Network