AMCG00009557


Basic Information

Item Value
gene id AMCG00009557
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41498111 ~ 41501769 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009557
CATGCATGTTGAGccttatttcattttctgtctgcATTTGGCGGCCATAAGCGCAGTTCCACAGCAGGACATGGATGACTACAATGCGGATTTGGAAAGTGACTCCTATGAGGATTATGAGGACGCTGAAGGAAGTCGGATCGTTGGGGGGGTGCGGATCAGCAACGTACCATATCAAGCCTCCATCATGAGCAAAACTTTCCATTACTGTGGTGGGGCCCTGATCAGCCCCTCTTGGGTTCTCTCTGCCGCCCATTGCTACATACGACCTTCGGAGATGGTTGTGGACCTTGGAAGTTCAGCAGTCTGGATTCAAGGACAGAAGACCCAGCGAATAAGAGCCGATAAGATCTGTTTGCCCCCCTTTTACAACAGGAGTGAAATGATCCATCATGACATCATGCTCATCAAGCTCTTCAGGCCGGCGGTGTTGGGGAGCACCATCCAGGTGGTTGAGCTCCCAGGGCCCCACGACAGCGTTGCCACGGGTCAGAGGTGCCTCATCTCGGGCTTTGGGAAGACCAGCGATGAGGGGAGAATGCTAGGCTTACTGCGGGCTGCCAACGTTACTGTAATGTCCACTGATCTCTGCAACCAGTCTTATGAGGGATTGGTCACCGCGAACATGATGTGCGCAGGAGACCGACTTGGCCGCAAAGACGCCTGCTATGGGGATTCTGGTGGACCTCTCATCTGTGACCGCAAGCTCTTTGGGGTGATTTCCTGGGGAAGAAGGTGTGGGAGTACGACTTATCCTGGAGTCTACACCTATGTCATTAAGTACCTGGACTGGATACACCAGTGCATCACTTCAGACTGTGTGTGTAGATGAGAACCCTAACCCTTCCCCTACCTCCTCCAGTCTAAATGTGGACCGATCCACCTAAACTTCAGATCAGCTCTCCCATCCCTCTACATTTAGGAATGAAGAGGTTTAATACTTCTGCCACAACTTCTGGTCAATGTCGGTCCATACTAATGCCTTATTGAGTATGCAGCAGGGGCagtgatattaataatactgatgACTGCCTTTATGAGCGACTTGCGAAACATGAGCCACGGTAGAATTACAGTGCATTTTAGATGATTGTAGTCCTTGACTAGGGCTGCAATGCTTTaacaaaagtttttaatttgccAAAGATTTAATCTGTGATTTGGAGTAATTGGAGCAGCAAAGCCTCTTTCTGAAGAGGTGTCCGTATATCAACAGTACATACTGCGTTTTCATAGAgcatttgatttttaaacaattaaaggtTTGTAAAGCGTGAACATGACTTTTAATGTGTTGGTCTCCAAGTCTAGTCTTATTTTGATGCAATAAATATTTGTCAGTGGTgtattgacatttgttttggGGCCGAGTCCTTTATAGAGGCATGTAGAGTAAGTTGAATTACTATGGAGTCCTGCTTCAATTTTGCTTTTAGTCTCACCCCAAtcttaaaggaaaaacacaattttattaAACCTTTATTACATAAGTACTTTGGTCTTTCACAGCACACCTGGTCCTGCCTGGTCACAAGTAAGACTTGTACATACTTTTGATTTAAAGTACAAGGTACATAAACACATAGCATACAAATCAATCTTGGTAGCCttcccaaaacaaaactggGGTGCTCACTCTGAAAGTCCTTCAGCTTGTCTTTTGGTATGAAGTACCGAACGCATCATAAACAATAGTTTTTAAGGCAGTATGGTCACTGACACTCAGTTATATTTGACTATACAGGTTTCCTGCCATAGAGCAGCATGAACACATGGCCATTAATCTCAGTGCAGATGGTGTAATATGTTACACCAGTAATTGTGGTTAAATGGAAGAATGGGGATCAATGGCAGTCTCTTTCTGTGCTCAGACGGAGATCGCTCCGGGCACAATCCTGCGGATGTGTGTGTAGGACTTGCGCAGGGTGACGCTGCTGTGGTGCGAGACCCCCCGGGGTAGCACACACTCCTCCGTGAGCTTCTGCGACTCGGGGTCCCAGCACAGCACCGTGGCGATGACCTCATTCTTCTCGTCTCGGCCCCCCGTGATGAAGATCTTGTTGCTGCAGGCCGCGATGCCGCAGCTTGCTCTCTCGTGGCTGAACCGCGTGACCAGACTCCAGG

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009557 True 2124 mRNA 0.47 5 41498111 41501769

Neighbor

gene id symbol gene type direction distance location
AMCG00009553 NA coding downstream 73038 41417751 ~ 41425073 (-)
AMCG00009549 sox14,LOC107679857,LOC103365676,LOC107756185,LOC107713406,LOC100695210,LOC107593189 coding downstream 243573 41253822 ~ 41254538 (-)
AMCG00009545 NA coding downstream 322785 41171314 ~ 41175326 (-)
AMCG00009548 NA coding downstream 330875 41159899 ~ 41167236 (-)
AMCG00009547 NA coding downstream 342201 41140440 ~ 41155910 (-)
AMCG00009561 yeats2,LOC107578903 coding upstream 13719 41515488 ~ 41542000 (-)
AMCG00009558 LOC107590230,LOC107721905,LOC107663692,LOC107671351,LOC107586738,LOC103026629,LOC108443641 coding upstream 43136 41544905 ~ 41562147 (-)
AMCG00009559 NA coding upstream 68844 41570613 ~ 41572167 (-)
AMCG00009560 NA coding upstream 72371 41574140 ~ 41584461 (-)
AMCG00009565 NA coding upstream 105028 41606797 ~ 41609389 (-)
G57600 NA non-coding downstream 564901 40932965 ~ 40933210 (-)
G57596 NA non-coding downstream 721027 40721431 ~ 40777084 (-)
G57545 NA non-coding downstream 1154632 40339347 ~ 40343479 (-)
G57524 NA non-coding downstream 1338503 40159397 ~ 40159608 (-)
G57400 NA non-coding downstream 1623882 39873971 ~ 39874229 (-)
G57858 LOC103374679,LOC100699862,LOC108250355,LOC107390564,LOC106535138,LOC106904453 non-coding upstream 671489 42173258 ~ 42175707 (-)
G57873 NA non-coding upstream 703501 42205270 ~ 42205559 (-)
G57982 NA non-coding upstream 966416 42468185 ~ 42468759 (-)
G57988 NA non-coding upstream 975952 42477721 ~ 42478112 (-)
G57998 NA non-coding upstream 1037670 42539439 ~ 42540113 (-)
AMCG00009521 gigyf2,LOC107728389 other downstream 1340640 40121463 ~ 40157471 (-)
AMCG00009472 NA other downstream 2660517 38827965 ~ 38837594 (-)
G57155 dner other downstream 2915291 38580285 ~ 38582820 (-)
AMCG00009437 NA other downstream 3589143 37889502 ~ 37908968 (-)
AMCG00009417 NA other downstream 4022076 37467254 ~ 37476035 (-)
AMCG00009571 LOC107087052,LOC105890629 other upstream 312790 41814559 ~ 41826934 (-)
AMCG00009582 NA other upstream 539430 42041199 ~ 42056128 (-)
G58025 NA other upstream 1147081 42648850 ~ 42673707 (-)
G58333 NA other upstream 1980652 43482421 ~ 43945297 (-)
AMCG00009672 NA other upstream 2487742 43989511 ~ 43995654 (-)

Expression


Co-expression Network