AMCG00009560


Basic Information

Item Value
gene id AMCG00009560
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41574140 ~ 41584461 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009560
CGCAGTCCGAAACGGAGCACGGTTTGCAAACATTGCTtttataaaatcacaataacCAGGAGTAGTCCAATGCGAATTAATGTAAGAACATGACGATATGACGCGATAGCTGTGCACCGATGCTGGCATTTTTTATcgtaacattattttacagtgagTGTCTTTATATCCTGAACTGTAATAATTACGGGTTGCACTGGGTTCTCGGCAGCTTTGAACAGTAAAGTACTGGAGTTATTCTGGCTGGTGAAGTGCTGGCGTGTTGGTCCTGCAGgtgaagatgttttttaaaGCTTCCAGCTGTTCCTCAGAGCAGCTCAGCTCCCCACCCAAGGGGACCTCTTTTTGCGGAGTCCCCTCTCAGATGGCGTCCTCCCTGCCCCTCGATGACAGCTTTGACCTCAACAAGTCCTACCCTTGTGCCAGCAAGCCGTACCGTTACCGGTGCCCAGCGCCAAAGCTGTGCCACATCACCGGATCCATCTCAGAAGATGACATCAACTCTTTCTGCTTCCACTCCGTGGCTGCACGAAATCTGCAGCTGTCTGACCTGTCCCGCTCCAGGACCCCCCCGGGCTCTCTGTCCTTGTCCAACTCCAGCGGCTCTCTCCTCCGGCAGCTGACCAAGGGAGCCCTCAACCATTCAGTCACTCCCGCTGTTCACAACCCCAAAAAAGCCATCCTCACTGTGGACACTAAGACCACAGAGATACTTGTTGCCAATGAAGTGGCTTGTAAGTTATTTGAATACAGAAGCCAGGAGCTGATTGGATTAAAGTTGACCTGTCTCTTAAGGAAGACCAATCAGACCCTCGAGGAAGCTCTGGGGGAAGAGCATTTGCAGACCAATGGGAATTTAATCATGGTGTCAGGAAAAGTgGTCGATGCAGTGAGTAGTTCTGGCATTAAGGTCCCGGTGTCTGTGTGGGCCCACAGACTGACCCTGGAGGGAAACCGCTGTTTGGTGGTGATGGAGCCAGTAGAGAGAATATCGGCTTGTGTCTCCTTCACACACAATGGCGAAATTCTGTCTTGTGATTCTGTGTTTGCCAAACTCCATGGCTACCTGAGATCTGACGAGGTGATCGGGCTTCCCATTGCCGACTTCATTCCTTCTCTGCACATCCCAGCTAACGTCAGGGAGATTCCCAAGACCCTGAGGATCCAGAGACTGACAGGCAGGTCTAGGGATGGCACCACTTTTCCCCTCAGTATAAAGCTCCAGGATGTGGTGGACTGTGGGAAAACAGATCATCTAACAGAGCAGTCCAGCAGCGCAGACTCCAGGGGAGCTGGAAAAGGTCAGTACATGACTAAAGGGACTGGTTGGTCCAGGACGCCTGATGCTGAGATGTCCAAAGATGGTGTAGAGCATCGCACACCCAACGAAGCACCACAACAGCACTCCCTGCCCCCCCGCAACGCACAGGTGTCTGCACAAGAAGAAAACTGTGGACAGCCTTCAGCAGGTTTGGGGCTGGCGTTCAGCGCAAACCTGTGGGTGTTCACAGCGATGAGCGGACTGGTGACTCTGCTTCCTGACGGCTCGATCCACAGCGTCAACAACAACTTTGCCTTGATGCTGTTTGGTTACAAGAAGACCGAACTGCAGGGGAAGAGCATCACTTTTTTGATGCCAGGTTTCTATGAGAGTCTGTGTGCCTTGGAGGAGAGCTCTCTGCCCCCCGTGGAGGACGGGCTTGGCGATCCAGTGGACTTGTGCGCAAGCATTGCAGTCGAGACAAATACTGAGGGAAACGAGTGTGGTCCGCTGCTGGCTGGAGACATGGCCATGGTGCCGCGAGAGGAGCAGGGCACCGTTCCGGGCGGGATGGGCGAGATGTTCACCGACACCAGTGCCAAGCAAAATAGCACGACGGATTTGGTGAGCGAACCTACCCGGGTCACGCCTGGGTTCAGTGAGCATGAGGGAGACACCACCAGTGCCCTCCTGCGAACCCCCTGCTTGGATGAGTCGTCTCGGGGATCCCACACGGGCGACCCACAGCCTACAGCCACAGAGGACTGTAGATCTGTGTCTCGGGCCTCCAGGCACTCAAGAGAGCTTCACTCCAAGACCGCAGGGACTCTCCCAGTTTCAAACTTGGGTAAAAATGATCTGTTGGACTCGAAGACCACAGAGAACTCCAGCTTTGAAGTAATCTCTCTGGGCAGTCAGTCCTCCTCTGGCTTTTGTGAGCAGTGGCTCGGGATCTCTGGACCAGATCTCCATGAGGTCACTGGGCCAACTTCTGGACCTCTAGATTCGGGGAAATGCCCAGACATGAAGTCCAGTGAAGGTCTATCTCGGGCCCTGCACAACCTAGACTTGAGTGGCAGCTTGGAGCTCCTACAGGCCGATCTGTCTCAGACCTCCTGCGCCACTTCCGAGCTCCTCAGAACCCCCTCGCCCTATGTGCTGGAGTCCGAGACCGAGGACACTAAAGTCGGGACCAACGTGGAGGGCCCGGCCCGGCATGGGGGAGGCAAAGGCGATCTCTTGGACATGGACCAGAGGCAGTGGGGCCCGTGTTCCGATCAAGGGCGTCTTTTAAACATGGATGACTTGAATGATGGAGGTCTGCTGAATAAAAAGCCACTCCTGCAGCCCCTCATGAATGACGATACTCCCACGACCTCCACTCCCAAAAAACAGCCCAGTGGGGCGCCGAAGGAGATCCAGGAGGGTCAATACGAGGGCAACTGCTATCACAGAGACGGATCCAGATTGAGTGTGCAGTTTGAAATCCACCGCACGGCACTTCCCAGCGGACAGCCGGTGTTCTGTGTCTGGCTGGTGAGGAACCATCACCGGATTCGGCAGGAGAAACTGAAGAGGTCGGGGCTCCTGCGCTCGAGTCGGGACAGCCCCTGCGGTTCCTTCCACGACGCCTCCGCACTCAGCCTCGGGGAGGTGATACAAGGCAGTGCGGCGCGTGGCGAGGGGCTGCGGTGCCCCCAGGACCTGGAGGAGTCTCGGGCCTGTGAGGGGCAGTTCGAAGAGGACTACCTCCCGCTCAGCGCCCTCGGCAAGGGGGCCTTCGGGTTTGTGTGGAAAGCCCAGCGGCGGAGCGATGGAGAAGAGGTGGTGGTGAAGTTCATAAGGAAGAACAAGATCGTGAGTGACTGCTGGGTGGATGATCCTGACATGGGCCGGGTCAGCCAGGAGATCGCTATACTGACCAGACTTCAGCACCCCAACATCATCAAGGTGCTGGAGGTGTTCGAGAATGAGAGCTTCTTCCAGATGGTGATGGAGAAGCACGGAGAGGGGGTGGACCTGTTCGAGTTCATCGAAAAGCAGCCCTGCCTGGACGAGCCCCTGGCCAGTTACATCTTCAGACAGCTGGTGGCCGCGGTATATTATCTGCGCCAGAGGGACATCCTACACCGAGACATCAAGGACGAGAACGTCGTCATCAACACGGACTTCCACGTCAAGCTGATCGACTTCGGGTCGGCCGCTGTGCTGAAGCCGGGGAGGCTCTTCCACACGTTCTGTGGCACCCTGGAGTACTGCTCGCCCGAGGTGCTGCTGGGAAACCCGTACGAGGGCCCGGAGCTGGAGATGTGGTCCCTTGGGGTGGCCCTGTACACCCTGCTGTTCGGGGAAAACCCTTTCTGTGAGGTAGAGGAGACCCTGGAGGCCCAGCTCAACCCCCCGTTCTGGATTTCACCAGAGCTGCACACTCTGTTGTTGGGGCTATTGCACCCCGAGCCCCGGGAGAGGACCACGCTGGAGGCGCTGCTGAGCTGCCCCTGGGTCGGCCAGCCCATCAACCTGGCGCACTACAGCTGGGAGTCGGTGTGTCTGGGCAGCGAAGGTGAGCGGGGCATCGTGGAAGCTCCCCTTTGCCGCAGTGAGATTGGTCAGGAACAGGGAGACGAGTCACTGTTGACTAACGGAGATGCTGGCTGCCCGGGGCTTTCGGATGCCAACTGGCAGCCCacgggagaggaggaggaggaggaggaagagaatgAGAATGAGGAAGGAGCGTCACTGGCTGCCCTGGAGTCTGAACTCTTCAAGTACCTAATGAGTGAGGACTGAAAAAGGCTGGAATGATGGCCTGATAGAATTAAACTGAATCCTGAAACTGGAAGACAGGTGTGTAGCTCAGGATCTGCACACGGCCTGAGGTGAATCTTGAAACTGACATATAATCTTCTTGAAACTGACTTAATTGCCACGTCCTGGGATTGCACTCAGCCCTCACCCTCTCTGGGGCAGTTTTAATGGCAGATAGGAAGTGGCGGTCGCTCATGTGAATGAAATTGATTTACATCAAACACGGTTTCATGAATCGGAGATTAGCGGACTTCCTCTTCCTCTAGTGGCCGAATGCTAAACCCTGCCTGGATGCAGACCCTGTACAGTAGAGGCTCTGACGATCACGTTGAGGACACAGGAGGTTGAAGGCTTCTGCccacttttatatttatagtcCCCACACAAAGttcacatatatttttaaatttaactatttatttgttgcatttCTTCTATAATGCCTTCCATAAAATTCTCGTTTATTTTGTGGGAATATATCCCTGGCTGAAGGAACTCTGGTGTTCTAGTTTGGCAGTAATGTTTTACTCTGTATGCAAAGTTAATTAACTACTATATAACATTCTCCGATTAACCTGAAGTACAGAATCATGCGGAGTACATAACAGGGCGTGTGAAAGGAGAAGCATTGAAGGAAAAGGCAAACTATAACAAGACACTAAATGTGGAGTACACACACTATGGAATATTATAAATCACCAAAACGGttctaattaatatttaaaatatggtatTGTAGCGCAGTGTTGAGGTGAACACTTCTACAGAGAATGTTTATATCCAgaatttcaaatgaaggatctgtatacttttttcattgcttAATTAAATGTGCATATGTCTGTAATATGCACAAGTTTCTTAAAGGAACTAAAAATATTGCACACCTGAAGTTATTTTTCTcccttaattatatttataattgtattcatatttttatgtacTATCATTTAAACTTCCTGACGCAAGTGCCTCGtcctatttttatgtttaactCCATGAAATCAGCGAAtcattaaagttattttatgaaatgttttgttgttttattgattaGACAACAGGACTGTTCATGTGACAC

Function

GO: NA

KEGG:

id description
K08801 PASK; PAS domain containing serine/threonine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009560 True 5153 mRNA 0.52 20 41574140 41584461

Neighbor

gene id symbol gene type direction distance location
AMCG00009559 NA coding downstream 1973 41570613 ~ 41572167 (-)
AMCG00009558 LOC107590230,LOC107721905,LOC107663692,LOC107671351,LOC107586738,LOC103026629,LOC108443641 coding downstream 11993 41544905 ~ 41562147 (-)
AMCG00009561 yeats2,LOC107578903 coding downstream 32140 41515488 ~ 41542000 (-)
AMCG00009557 NA coding downstream 72371 41498111 ~ 41501769 (-)
AMCG00009553 NA coding downstream 149067 41417751 ~ 41425073 (-)
AMCG00009565 NA coding upstream 22336 41606797 ~ 41609389 (-)
AMCG00009566 NA coding upstream 64821 41649282 ~ 41652922 (-)
AMCG00009567 NA coding upstream 100051 41684512 ~ 41700757 (-)
AMCG00009572 NA coding upstream 203152 41787613 ~ 41788999 (-)
AMCG00009570 NA coding upstream 260559 41845020 ~ 41849637 (-)
G57600 NA non-coding downstream 640930 40932965 ~ 40933210 (-)
G57596 NA non-coding downstream 797056 40721431 ~ 40777084 (-)
G57545 NA non-coding downstream 1230661 40339347 ~ 40343479 (-)
G57524 NA non-coding downstream 1414532 40159397 ~ 40159608 (-)
G57400 NA non-coding downstream 1699911 39873971 ~ 39874229 (-)
G57858 LOC103374679,LOC100699862,LOC108250355,LOC107390564,LOC106535138,LOC106904453 non-coding upstream 588797 42173258 ~ 42175707 (-)
G57873 NA non-coding upstream 620809 42205270 ~ 42205559 (-)
G57982 NA non-coding upstream 883724 42468185 ~ 42468759 (-)
G57988 NA non-coding upstream 893260 42477721 ~ 42478112 (-)
G57998 NA non-coding upstream 954978 42539439 ~ 42540113 (-)
AMCG00009521 gigyf2,LOC107728389 other downstream 1416669 40121463 ~ 40157471 (-)
AMCG00009472 NA other downstream 2736546 38827965 ~ 38837594 (-)
G57155 dner other downstream 2991320 38580285 ~ 38582820 (-)
AMCG00009437 NA other downstream 3665172 37889502 ~ 37908968 (-)
AMCG00009417 NA other downstream 4098105 37467254 ~ 37476035 (-)
AMCG00009571 LOC107087052,LOC105890629 other upstream 230098 41814559 ~ 41826934 (-)
AMCG00009582 NA other upstream 456738 42041199 ~ 42056128 (-)
G58025 NA other upstream 1064389 42648850 ~ 42673707 (-)
G58333 NA other upstream 1897960 43482421 ~ 43945297 (-)
AMCG00009672 NA other upstream 2405050 43989511 ~ 43995654 (-)

Expression


Co-expression Network