AMCG00009571 (LOC107087052,LOC105890629)


Basic Information

Item Value
gene id AMCG00009571
gene name LOC107087052,LOC105890629
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41814559 ~ 41826934 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009571
CTGACAGCAGACGCgatcgtgtagcgcagatgtccgcagctctgcgcggctGCACCAATGGCATCCGGGgattccgcagatctgcgcagaactgagGACATCTGCGCTGCAAGAACGCCAGCGGTTCTTTGGAGAAAGGGGGCGGGCCGGAAAGGCGTGTTAAAGCctcttcccctcctctctcccggCCTGGTCCGTCTCAGTCGCCGAGGACGTCCATCGCAGGGAGCAGAGGGCGAGTGAGGGCTTGGGTTTCCATTGCGACGACACACCTTGTGCACAGAGCTCCAGTCTGCCGAGTGAAGATGGCCAGTTATCACAAGCCAGACGAGAAGACCCTGCAGTGCCTGAGGGACACGGCCAACAAGCTGAGGATTCACTCCGTCAAGGCGACATGCGCCTCCAACTCCGGCCACCCATCCTCCTGTTGCAGTGCAGCGGACATCATGTCTGTCCTCTTCTTCCACACCATGAAGTACAAGGCAGCAGACCCCCGCAATGCCCATAATGACCGCTTCATCCTGTCCAAGGGTCACGCTGCCCCGATCCTGTACGGAGCCTGGGCCGAGGCGGGCTACATCAAGGAGGCCGACCTGCTGAACCTGAGGAAGATCGACAGCGATCTGGAGGGACATCCCACCCCAAAACTGGCCTTTGTGGACGTGGCGACTGGCTCCCTGGGACAGGGTCTGGGGGCAGCCTGTGGCATGGCATACACTGGGAAACACTTTGACAAGGCCAGTTACCGTGTCTATTGCATGATTGGAGATGGAGAATGCGCCGAAGGGTCTGTCTGGGAGGCGATGGCCTTTGCTTCCTTTTACAAATTGGACAACCTGGTGGCCATCTTTGACGTCAACCGCCTTGGGCAGAGTGAGCCAGCTCCGCTCCAGCACGACCTCGAGATGTACCGCAAGCGCTGCGAGGCCTTTGGCTGGAACACCTATGTGGTGGACGGTCACAATGTGGAGGAGCTGTGCAAAGCGCTCTGGCAAGCTCAGCAAGTCAAGGGCAAACCCACTGCTGTTGTGGCCAAGACCTACAAGGGCAAAGGACTCAAAGGAATTGAGGATGCTGACAACTGGCACGGGAAGCCCATCCCCAAGGACAAGGTGGAGGGTTTGTTGGCTGACCTGAAGAAGGCGATTGAGACCAATAAGCCATTGTCTCCTGAATGCCCAGTAGAGGATGCTCCCAATGTCAACATCACGAGTGTCGCCATGCCCTCACCTCCTGGCTACAAACTGGGGGAAAAGGTGTCAACTCGCCGGGCCTATGGCGATGCCCTGGCCAAGCTGGGAAAAGCCAGTGACCGTGTGGTGGCCCTGGATGGAGACACCAAGAACTCCACCTTTTCAGAGACCTTCAAGAAGGCCCACCCAGACCGCTACATCGAGTGCTTCATTGCTGAGCAGAACATGGTAAGCGTGGCCATCGGTTGTGCCACCCGCGATCGCACAATCGCGTTCGCCAGCACATTCGCCGCCTTCTTCTCCCGGGCCTATGACCAGATCCGCATGGGCGCCATCTCCCAGACCAACGTCAACCTCTGCGGCTCCCACTGTGGCGTCTCGATCGGTGAGGACGGGCCCTCTCAGATGGCCCTGGAAGACCTGGCCATGTTCCGTGCTATCCCCACCTGCACGGTCTTCTACCCCAGCGATGCTGTCTCAATGGAGAAAGCAGTGGAGATCTCTGCCAATACCAAGGGGATCTGTTTCATCCGCAGCAGTCGCCCTGACACAGCTGTCCTCTACTCCCCAGATGAGAAGTTCGAAGTGGGACAAGCCAAGGTGGTGCGGAAGAGTGATCATGACACAGTGACCGTCATCGGAGCTGGAGTGACTCTGCATGAAGCGCTGGCTGCTGCTGACCTGTTGGCTAAAGAGGGTAAGCACATCCGTGTGATCGACCCCTTCACCATCAAGCCCCTGGACGCCGAGACCATTCTTTCCAACGCTAAAGCTACCGGAGGCCGAATCATCACGGTGGAGGACCACTACAAAGAAGGTGGCCTTGGGGAGGCGGTGTGCAGCGCGGTGGCTGAGGAGCCTGATATTCTCGTGCAGATGCTGGCGGTGACACAAGTCCCCCGCAGCGGCAAGCCCACCGAGCTCCTCGACCTGTATGGCATCAGCGCCAAGTGCATTGTCGCGGCCGTCCGGTCGACCTTCGCTAACTGAGGAGCGGAAATTCCACCTATCCCCTTCAGTGCTGGTTTTCACGGCCCTctccaaatcaaaactttaggCATCTGTCccttgaaatgtaatgtgtacaGGAGTCTGTTCCCCTTCTGACCACACTTGTGTAAAGCACATTCCATTCATAATAAAGATTACATAGAGTCATTCCccccccctcttctctctccaaaCCCTGTACAGTGTGAGGAAGCTTTTCTGTAAAGTCAACCACTTcattgatctctctgcagcttCTTGATCAGAGTAAATCCCTTTATTGGCAAAGGGCAGAGATTTGTGCAAAATGAGAAGTGGGACTAATGAATTTGGATGCCCAGATTCGGGTTTCTCGCTTATCTCGCACATTTCGGTTGTCCCATTCCAAAACAAGGCAGCTAGACTTGGTAATGCATTCCTTGCAGTGGTTGCAGTTGTCTCTCTCTTCTATAATCTTTAGCCCATTGCTTCTGGTTGCGCTTGGATTAATCTTGTTTCTTCATCCATTTCAAAGCTCTAGTGTACTTTGATTATTTTCCAGAGAAGTCTGTCCATACTTTCAGGTGTCTGCTGTGATTTATGCCTGTACAGAAGGGGACAGTGTCGAGTCTTAAAATCTTTGGATTTCTGTCTCCAGATTATTTAGCGGTCCTAGTGTGTGACCGTGGTTCTCGAGAAAGCTCGACTCATTTCCTCCTCTAGGGAAATGATGGTCTTAAATGATTGTTGCTAGACTGTTCGTGACCCGATCAGTTTAAAGGTGTTTTCATAAGTTCCAAGTAAAAAATGCTCACTGCTTGTAGTCGGGAATGGATTTGCTAGTTCAGAACATTGGGAACATTGCAGTAGTGTGATTTGTACTGCTTGGGTAGTGAGTGCACTTACATTATCACTGCTTCggttttggatttttttttgttctgcctTTTTGGCTGCTAGACAAATGAGTAAGCATTTGTTCCTTAAGCAAGCTGGGAGTATACCCTTCTACAGGAATGCATGATTATTAAACTGCTTGCATACAGGCAAATACCTATTCCTCTCCAGTAAACCTACACTACTGCTGTCCATCAGTTTTTCAGACTTGTGACAAAATCCTGCGAATTTCTCTCTGTAGTTTGGTGATCACAGACCGGTTTAGTCAAGCGTATGGATGGGTGCAGTTCATGTGTggagagtttttattttaatgttaactgTTCCAGTACATTTACTatgttattttgtgttgctAATTCAATGCTGTGTGAGAGATCCTTATCCTCCCATGTTATGCAAACCGGCTTTAGTTTGCACTGCCTCAGTATGGTTTACGGTccacaataaaatgttaaaaattgttttttctctggGTATTGCTTTTTGCACTGCCTTTCCTAGAAGAATATAGAGTATGGTTAATCCATATGGCTTACGTTGTAGGTGCGTGTTTCTATGGATTACTTCAAGGACTGGACCCGTGCACCCCTGTAATGTCCTCACGTTTACTTTTGAAggttctttttccttttcacttGCTGAACATTGTCGGTAAGACTTTCTTTTCCCGTTCTTTGAATACATTCAGTATTTATAGCAAACATGCACTTTGGGATGAATGTATGTAAAGAAAGGGTGTCCAATGCAGTACCTCTACTTCCTGCTGCAATGTTGaacaatgtaaataatataatagtcATGGCAATAGATATTTATCTCTTTAAATTCCTGAGAGGTGGCTACGGGACAAGTCCATTTTGTTGTGGTTTGCTTTATGGTAGGTGTGGCCCCTAGGAAGATGAAACTTAAAggctctgtttttattttgtttctttgccatacaaaatgtcaaaagcaAGGAACTGAAAGTTATCAACTGAGATCAGTGTTGACTAAAAGCCATACAAACTTGGAGAGAGAGTGGCTTATGCCCTACTACTGAAAATCTGTACAAGTCCACCATTTGTGCTAGAGGTTGATTTCCTaatatcattcatatttttctctctaCAACTCCAGCACTCATGTAAATATATTAGAAGTATCTGTGGGATTCTTAACTCAAAAGGAGGAATAACACCTACACAAGTCTAAGATACGCggtagaaaaataaagacactgcaAACATACACAGTGTGctccaaacaaaatgttattcaaCCCAAGATTTGATGAGATCCTAATCAAGCAATTGTATAGGAAACTTGCAAGGGGTTATGAGTGAATTCAGTGTTCGTACTGTTTAGCACTAACTTTGGAGTCAAGAACCCACTGTTTTATAATCCACTGTCCTCTCCATTAGAAAAGCATTCCAGCTGTATGATTTGACATTATAGCTGATGTTTTCAAACTGGTCTGTTGGCTCCGTCCACGCAAACTCCCAAAAAGATACAGAATAACTGTAGGAAAGCAGCTACAGAGTTTATAGATCTGATTACAACCCCAATTGTAAAAACTATCCATGAAAATGGGAATATATACAATTTTCCCTTTAGGTctaaatttatatttactgtatagaAAAATTTGCCTAGCTTCAGAATATTGGATATTGTGTGCAGAACTGTATAGACATGCATCAGTTTCTGCTTTGTTGTAAATTCCCATGTGGGATTGTGTGGGGATGGTCTTTAATTTGAGAAGAAAGTTGTTTTAAAAGGTCACTCATCACATTAAAGGGTTTGTATGAATATGTCCTGCATGTCAGGATCCCCAAATTA
>TU72239
CTGGACCCGTGCACCCCTGTAATGTCCTCACGTTTACTTTTGAAggttctttttccttttcacttGCTGAACATTGTCGGTAAGACTTTCTTTTCCCGTTCTTTGAATACATTCAGTATTTATAGCAAACATGCACTTTGGGATGAATGTATGTAAAGAAAGGGTGTCCAATGCAGTACCTCTACTTCCTGCTGCAATGTTGaacaatgtaaataatataatagtcATGGCAATAGATATTTATCTCTTTAAATTCCTGAGAGGTGGCTACGGGACAAGTCCATTTTGTTGTGGTTTGCTTTATGGTAGGTGTGGCCCCTAGGAAGATGAAACTTAAAggctctgtttttattttgtttctttgccatacaaaatgtcaaaagcaAGGAACTGAAAGTTATCAACTGAGATCAGTGTTGACTAAAAGCCATACAAACTTGGAGAGAGAGTGGCTTATGCCCTACTACTGAAAATCTGTACAAGTCCACCATTTGTGCTAGAGGTTGATTTCCTaatatcattcatatttttctctctaCAACTCCAGCACTCATGTAAATATATTAGAAGTATCTGTGGGATTCTTAACTCAAAAGGAGGAATAACACCTACACAAGTCTAAGATACGCggtagaaaaataaagacactgcaAACATACACAGTGTGctccaaacaaaatgttattcaaCCCAAGATTTGATGAGATCCTAATCAAGCAATTGTATAGGAAACTTGCAAGGGGTTATGAGTGAATTCAGTGTTCGTACTGTTTAGCACTAACTTTGGAGTCAAGAACCCACTGTTTTATAATCCACTGTCCTCTCCATTAGAAAAGCATTCCAGCTGTATGATTTGACATTATAGCTGATGTTTTCAAACTGGTCTGTTGGCTCCGTCCACGCAAACTCCCAAAAAGATACAGAATAACTGTAGGAAAGCAGCTACAGAGTTTATAGATCTGATTACAACCCCAATTGTAAAAACTATCCATGAAAATGGGAATATATACAATTTTCCCTTTAGGTctaaatttatatttactgtatagaAAAATTTGCCTAGCTTCAGAATATTGGATATTGTGTGCAGAACTGTATAGACATGCATCAGTTTCTGCTTTGTTGTAAATTCCCATGTGGGATTGTGTGGGGATGGTCTTTAATTTGAGAAGAAAGTTGTTTTAAAAGGTCACTCATCACATTAAAG

Function

NR:

description
PREDICTED: transketolase-like

GO: NA

KEGG:

id description
K00615 E2.2.1.1, tktA, tktB; transketolase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009571 True 4883 mRNA 0.48 14 41814559 41826934
TU72239 False 1207 lncRNA 0.37 1 41814601 41815807

Neighbor

gene id symbol gene type direction distance location
AMCG00009572 NA coding downstream 25560 41787613 ~ 41788999 (-)
AMCG00009567 NA coding downstream 113802 41684512 ~ 41700757 (-)
AMCG00009566 NA coding downstream 161637 41649282 ~ 41652922 (-)
AMCG00009565 NA coding downstream 205170 41606797 ~ 41609389 (-)
AMCG00009560 NA coding downstream 230098 41574140 ~ 41584461 (-)
AMCG00009570 NA coding upstream 18086 41845020 ~ 41849637 (-)
AMCG00009573 NA coding upstream 23204 41850138 ~ 41863329 (-)
AMCG00009574 NA coding upstream 40607 41867541 ~ 41874590 (-)
AMCG00009576 NA coding upstream 56492 41883426 ~ 41895243 (-)
AMCG00009583 NA coding upstream 246976 42073910 ~ 42082769 (-)
G57600 NA non-coding downstream 881349 40932965 ~ 40933210 (-)
G57596 NA non-coding downstream 1037475 40721431 ~ 40777084 (-)
G57545 NA non-coding downstream 1471080 40339347 ~ 40343479 (-)
G57524 NA non-coding downstream 1654951 40159397 ~ 40159608 (-)
G57400 NA non-coding downstream 1940330 39873971 ~ 39874229 (-)
G57858 LOC103374679,LOC100699862,LOC108250355,LOC107390564,LOC106535138,LOC106904453 non-coding upstream 346324 42173258 ~ 42175707 (-)
G57873 NA non-coding upstream 378336 42205270 ~ 42205559 (-)
G57982 NA non-coding upstream 641251 42468185 ~ 42468759 (-)
G57988 NA non-coding upstream 650787 42477721 ~ 42478112 (-)
G57998 NA non-coding upstream 712505 42539439 ~ 42540113 (-)
AMCG00009521 gigyf2,LOC107728389 other downstream 1657088 40121463 ~ 40157471 (-)
AMCG00009472 NA other downstream 2976965 38827965 ~ 38837594 (-)
G57155 dner other downstream 3231739 38580285 ~ 38582820 (-)
AMCG00009437 NA other downstream 3905591 37889502 ~ 37908968 (-)
AMCG00009417 NA other downstream 4338524 37467254 ~ 37476035 (-)
AMCG00009582 NA other upstream 214265 42041199 ~ 42056128 (-)
G58025 NA other upstream 821916 42648850 ~ 42673707 (-)
G58333 NA other upstream 1655487 43482421 ~ 43945297 (-)
AMCG00009672 NA other upstream 2162577 43989511 ~ 43995654 (-)
AMCG00009697 NA other upstream 2674853 44501787 ~ 44512249 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003619 tkta coding NC_007122.7 CM002895.2 36989696 ~ 37035835 (+)
grasscarp (Ctenopharyngodon idella) CI01000306_09475675_09494799 TKTA coding CI01000306 null 9475531 ~ 9495855 (+)