AMCG00009573


Basic Information

Item Value
gene id AMCG00009573
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41850138 ~ 41863329 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009573
CCCGCCCTTACTCCACACAGCCACGCCATTCAGGCAACAAtcatgaaattacatttatttcatttccaaAGCAGCATCGACCAATCAAATCAGGTTTCGGAGAGCGAAAGTGAAAGTGCAGGCTGTGCTGTGCGGCGGGGCGCTGGTGTCGGTACTGGGGTGCTGGTTCATTATCCTTACAGACTTACAGACCCTGAGGTCCAGCGTGCGTGTTCACAGGCGTGTTCACAGGCCATggagatgaagatgaagactttgttgtttcttgtttgcatCGCGACCGTTTCTTCACaggATGTCCACCTCTCCACAGAGCCTGAAATCCGGGGCACTCTGTCTGAGAAGGTATCAATTTCGTGCCAAATCTCGGGCAAACACAGTGCTGAAAGAATGACAGTGAGATGGTTGAAAGGCAAACAAGAGGTGTACACTTACCAGGGTGCCTCCGGTACAGGCAAGGCAGGTGCAGCGTACCTAGAACGAGCAAACCTTGTTGAGAAAGCCCTAAGCACAGGCGATGTATCCCTGCTTCTCTCCAACACCACCATCACCGATGAAGGAGAATATACTTGCAGCGTGGGAAGCTCTGCCCTGGCCACGACACAGCTTAAACTAGGCAGCCTGGGCACCCGACCTATCCTGGTCATGGACAAGTTTGGTTCGGTAcgctccctgtctctgtcctgcAAGTCCGAAGGCTGGCATCCCATCCCCGAGGTGGTCTGGACCGCCGGTGATGGTCAGACGCTTTCTGGGCAACCCGTAAAGACATCCCCGGGCTCTACTGGGTTGCTCAATGTACTCAGCTCAATTACTCTGACAGTAGAGGACGGCTCCAAAGTCACCTGCGCTATCATCAACCCCGTACTCGCCACCAAAACTCAGGAGACCCTCAAGATATCCGagaaagaaagacaggcCAAGGAAGCTGagaGGGAACCCCTTCTTGGCGCGCACGaaaataaagacaagAAAGAGACCAAAGAAGAATACGTCAAGTTGAAGAAGGAGCTTTctGAAGCTAGGGTGGTCAACAATTCAGAGTGGAAACGCATTCTAAGCAAGAAACATGTTGGCATCTCCCTGACTAAGGGCTCAGAGGGCCCAGCCTTGGCAGAGGGGAATCACTACTGGGAGGTAGAGGTGGGTGAAAAGAAGGAGTGGATAGTGGGAGTGAAGAAGGATGGTGTGACCGTTACTGAAAAGTCCTCCACGAGCGAAGGGGTCTGGGCTCTGTCCTGCAGCGAGACGACAGGCTATCGCGCCCTGCTCCCCAACCCTTTCCCCATCACCCCGGCCTCGCCTCCGAGGAAACTGGGCTGCCTGCTGGACTACCCGGAGGGGCAGCTCACCTTCTACGACGCGGATAATAGACACCGTCTGTACACCTTCGATACCAAGTTCGATGCACCACTAAAGTCGTTCTACCAATAAAACCAAATCGTTTCACTTTGTCCCACTCCTCCAATCAACAGCGCTGTGTCTTTTAAAGAGTCTTCCCAGTTGTCCCCCTCAAAGAGATAATGCTGTCAAGGAATGGCATCGACTCTCTCATTAGACTCCCGTTTCAAATGTCTTTATCTGGAAATTCCTTTAAAATACCACATGCTTCCAATTTTCCAGGTTTACCAACCACTACTACCCTGAACAACAGCCCAAATACTGTCATGGCAATGTGTATAAAGCATAATCGCATACTCTGTTTTCAGCTAGAAAACACTAACTGTAAACTGGAGCCCTCAGGGTATTAGTATTAATTCATGAATTGGGGAAAATAATTTGATTCCTCCCAAAACAAGAGCTCAAGTCACTCTTATCgagggcaacttacaatatataagcgcaatataaagtgcaaaaatacagttcagttcaaggcataaaacattacaaattccaatttacataatacaaagcaattcaaagcataatatatttgacaaattccaatttacccaagtgtatacaatatatgaggtcttgcATCTGGACTTAGTCATTTAGGTGGCATACCAGGGTGGATTACCAGGTGTCAGTGTTGTCATCAGATGTTCTGTGTGTGCAATTCACATAACAATGAAGCGAAAGAAATGGGACACTCAGATCTCCTTACAATGTGATGTCACTGCTTACATGGATGTATAACAGAAAGGATCGTCACAGAGAAGCTTTGCAGAGCTCTCAGCCTTACCTAAAGAACACGGCCTTTCTGTTAGCCTTGCCGTTTGACAGTCGTCAGCCTTCTAAGCCAAGTTACCTACTTATGGAAGTGTTGGTGTCTGCTCTCTTGTGTGCTTAGCGTTTTGCTGCAGTTCAGTGAAGCCAAAACTGCTTTTCTAAATCAAAAAAAGATTGCGGTGTTTGGCAGTGCAACCTGAATCTACTTGTTGATAACAGGAGAAagtgctgtatttttgtttcttctaaatactttacattttctgatCGTCATGAACAAtttgcagcattttattttctaatttacatttttttattttacagttattgATTTCATAGGTTTTGGATAGTGTTGCTGTGAATGTCTTAATTCATACTCCTGTTTAAATTCTGCCACTGCCCTGGTTTTTGGAGTCAAAGTTTAATAATTTACACATGGTTAAGCAAGATCAGAGTTAGATCAGAGTTGTCCCAGTTTAGTCCTTTAGTCCAAGGTCTTTGTGTACTGGCAAAAGATGAGATGTTTTTCTGTAAAAGTCCCATATATGTGTACCGACCCGCAGTGTGCAGGATTCAGACAGAGGAGACACTTAGAGGCATGCTGAAATAAGCAAACTGTGATCATGTCCTGTCGATTTGCTTCAGGGTCTTGTCATTTGAGAACTTTACATCTACATTTGTCTTCAATGCCAGCcacttcctttatttttttttgcgaAACCCACATAAAAGCTTGTCTTTGCTTTCAACGAGTTGTTCTATTATTTGGagcatttcttttcaaatctGAAGTGCTTTACAGAAGTTtgcgtatttttttttttccactataAAGAGCCTTTTTAAGGATGACCGAGATCATTTAGCATTTTTATgaaagctgtttgttttttgtgaaagcTTCTATCATTTATCAGGTGCCTTATTCTTTTAaccagttttattaatttgtttcctcacacacagtgttttcttgttttaactgtaattatttaccaagtttctttatttttcaagaaatgtgtacacaatggtaaaaaaaacacactgaagatTAATCAAACTTCATCACCCGTACatcttatatataattatgtgtgTGAATTGAATTGTAAGGGTTTATTACCTGTCAtagaacattgtgtgtttttctatcATAAGGAAATTAGatttatactattttatttccttgaGCATATTCACAATGTTAGAGGGTGGGGTTGTGGGGAGgttgtgttattttcaaatttaatttggGCCACTATGTCATAAACACACATCTGTGTTGTATCAATTGCAATTACCGTTTCCCAAGTTAATTAAGTGCTTTGGGGTCTTTGTTCCTTTTCTCAAGAAATTcaaatggatacattttaaagggaatCTGGTATGTCTGATAATGCTAAAAATATACAGaaggatagatagatagaaatgcatatgtaaatgtttctgGTTGTGTAagttcatttttacatttgtaatgtttttgttttttctgttagtCTTATAGGGTACTAACATTTGTGCACAGTATTTCTTTCTAaagatgaatgcattttttttagtaattgaagtatttaaataattgtcagGTAACAACTGTACAGCTAGCACAAATTGTGGAAGAATGCTTCAGTTTCATTTTGccataac

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04612 Antigen processing and presentation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009573 True 3834 mRNA 0.42 11 41850138 41863329

Neighbor

gene id symbol gene type direction distance location
AMCG00009570 NA coding downstream 501 41845020 ~ 41849637 (-)
AMCG00009572 NA coding downstream 61139 41787613 ~ 41788999 (-)
AMCG00009567 NA coding downstream 149381 41684512 ~ 41700757 (-)
AMCG00009566 NA coding downstream 197216 41649282 ~ 41652922 (-)
AMCG00009565 NA coding downstream 240749 41606797 ~ 41609389 (-)
AMCG00009574 NA coding upstream 4212 41867541 ~ 41874590 (-)
AMCG00009576 NA coding upstream 20097 41883426 ~ 41895243 (-)
AMCG00009583 NA coding upstream 210581 42073910 ~ 42082769 (-)
AMCG00009585 NA coding upstream 221952 42085281 ~ 42102235 (-)
AMCG00009584 NA coding upstream 280263 42143592 ~ 42162603 (-)
G57600 NA non-coding downstream 916928 40932965 ~ 40933210 (-)
G57596 NA non-coding downstream 1073054 40721431 ~ 40777084 (-)
G57545 NA non-coding downstream 1506659 40339347 ~ 40343479 (-)
G57524 NA non-coding downstream 1690530 40159397 ~ 40159608 (-)
G57400 NA non-coding downstream 1975909 39873971 ~ 39874229 (-)
G57858 LOC103374679,LOC100699862,LOC108250355,LOC107390564,LOC106535138,LOC106904453 non-coding upstream 309929 42173258 ~ 42175707 (-)
G57873 NA non-coding upstream 341941 42205270 ~ 42205559 (-)
G57982 NA non-coding upstream 604856 42468185 ~ 42468759 (-)
G57988 NA non-coding upstream 614392 42477721 ~ 42478112 (-)
G57998 NA non-coding upstream 676110 42539439 ~ 42540113 (-)
AMCG00009571 LOC107087052,LOC105890629 other downstream 23204 41814559 ~ 41826934 (-)
AMCG00009521 gigyf2,LOC107728389 other downstream 1692667 40121463 ~ 40157471 (-)
AMCG00009472 NA other downstream 3012544 38827965 ~ 38837594 (-)
G57155 dner other downstream 3267318 38580285 ~ 38582820 (-)
AMCG00009437 NA other downstream 3941170 37889502 ~ 37908968 (-)
AMCG00009582 NA other upstream 177870 42041199 ~ 42056128 (-)
G58025 NA other upstream 785521 42648850 ~ 42673707 (-)
G58333 NA other upstream 1619092 43482421 ~ 43945297 (-)
AMCG00009672 NA other upstream 2126182 43989511 ~ 43995654 (-)
AMCG00009697 NA other upstream 2638458 44501787 ~ 44512249 (-)

Expression


Co-expression Network