AMCG00009578


Basic Information

Item Value
gene id AMCG00009578
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42036018 ~ 42042211 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009578
GCGGAAGGCGGGCCTTGTCAGTCACTGCTAACGAAGATGGCGGGTGGTTTGAAAGAGAAACAACTTTCTCAGAGAGTTTACGAGTCTTTGCAGCGGCTCAGATGCCCGCTGCTCGAAGGCCTGTTCCTGAGGGAAGCGGAGAGCATGCAGGAGCTGCTCTGCACCCCCTCTTTACACCGCATGGATATTCTCAAGTGGATCTGCATGAGTGTATGTCCGTCACTGAGTAAAAAAATCCTGGTTCTTGCTTCGACACAGACAGACGCTCTAATCCAAGAAATGGCAAAGCTGGGGTTTGAGATGATGCTGTGTCGACCAGATGACACCGATTTGATCAAGGGCTCGGCCACGCCCCTCCGCCAGCTTGTTTTCTTGGACCAGCTCCTCACTTTAGTCCCTGGTCCGCAGGCCGAGAAGGCCTCTGGgaactcctcctcctcctcatcttctGTGGGAGATCTGTCCCTCTCTGAAGAGGTGACCAGGACCGAGGAGCTGCTGGGGGAGCTACTGTCCAGCCCACACCTCCCCGATCTCATCCACCCCAGCTGCAGCCCCTGGCCGGCAGACATCCGTGAGCTGCTTCTCAAGAGAGAGCCGGCTGGCAAAACGCATCGAACTGCGTCAGGCAAAGCAAAGGAGCATTCCCTGAAGGAGGCCTCTGCccttttggaaaaaacaaactctgTCCTCAGTGAAATTTACTCAGAGtgTGAGTTCCTGAAGGCTGGCCCTCACTCCAGCGGTAGCGGAGGCCCCAGTGTGTCGGCACAGTCCCTCAGAATCGCCCTCTCCGATCTCGCCCAGCTCATGTCGGCATTCGGCCAAGTGTACGCTACAGATTTCCGAGACTACTGCAACAGAGAGCCGCCGCAGCTCAGCGTCAACGCGCAGGTGTTTCAGACCACGCACCAGCTACTGCACGCCTGCAGCCAGGAATTGCAGGCTTTGCAGCACGTCTCGGAAACGTCAAGAACGGTGATCAAAACCGTGGAACAGCGACAGCAGGCCAGGCAGTTCTGGAGCAAAGGGGAGATGCGCTCCTTACCGACAAAAGTGGCAGAGCTGAAGAGAAAGTACAGAGAGTTTTTGGCTGTGTATCGGCAGTAAAACTATGCGGTGgacagaatacatttggagaAGCCCTTGCCTGGGAGGAGGAGTCTGCTGCACTCGGACTGATCGTTGACAGCCAATGGGTTATACTGAGATGGTGGAAACTTCACTGGGATATGTTCTTCATGCATCAGCTCTCAGTATTATTCAGATGTTCTTTATGAGATCAGTACTGTTTTTAACCACACAACTATTTTCCTGCActgcagtctctctctgtctctatctagATGTCCTGTACATCAATATTTGGTTTTAGAATCCTTTGCAGATTAGGGTTATGGCACAGTTGTACCTTAagggagaaaatgtatttctcactCCAAAAGGAAATGTCTTCCATTTGCTTATGTATTTCACACTTGGCAGTCATTTCTCTTGCCTTGAAATTGTTGTAAATTGTTTGACTCCTCTACTTAGATTTTTATCACAAATAAACTGTACAGTTTGTCATGAGCTGCATTTGATGAGTACTCGAGGTTATGAATACAAGATGCAAGAATGTGGTCTCGGGACAAAAGGAAGTTTTATTTCtactgaaatgtgtaatttaaattgttatacaAAAGGTTGGTGGTTTCTTATGTAAGCATATCTCACATTCAGTAATTACACTTTTGCACACGATTTTAGGTTGATCTTAATCAAGTTGAAAGGAATGACAAACTGAAATGTCTACAGAGCTGGAAAACCTGCCTGAGATTATGGAGAACAAATCTCTCTGGCATCTAAGGCATGCAGTATATGTTTTGAAGAGGAAAAGACAGACAACACTTTGAGAATTTAGCATCATTTTAGGTAAGAGATGGTAAGGGAGTACCATATAcattgaacaaaaatataaatgtttcatgagctgaaataaaacACCCTAGAAATTGTCTATAAGCACACAAAGTTTATTTCTCAataattttgtgcacaaatgtgttgacatccctgtta

Function

GO: NA

KEGG:

id description
K16590 HAUS7, UIP1; HAUS augmin-like complex subunit 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009578 True 2061 mRNA 0.47 10 42036018 42042211

Neighbor

gene id symbol gene type direction distance location
AMCG00009579 LOC107712727,LOC103384719 coding upstream 6054 41979537 ~ 42029964 (+)
AMCG00009577 NA coding upstream 75109 41951667 ~ 41960909 (+)
AMCG00009575 NA coding upstream 125900 41901833 ~ 41910118 (+)
AMCG00009569 NA coding upstream 191561 41832871 ~ 41844457 (+)
AMCG00009568 NA coding upstream 251481 41775209 ~ 41784537 (+)
AMCG00009581 NA coding downstream 33267 42075478 ~ 42078291 (+)
AMCG00009580 LOC103374679,LOC100699862,LOC108250355,LOC107390564,LOC104941073,LOC106535138,LOC103468062 coding downstream 128135 42170346 ~ 42175700 (+)
AMCG00009588 NA coding downstream 151083 42193294 ~ 42211548 (+)
AMCG00009587 LOC107712663 coding downstream 171393 42213604 ~ 42224519 (+)
AMCG00009586 NA coding downstream 224611 42266822 ~ 42271197 (+)
G57792 NA non-coding upstream 196552 41839165 ~ 41839466 (+)
G57775 NA non-coding upstream 218223 41815921 ~ 41817795 (+)
G57770 NA non-coding upstream 285874 41749555 ~ 41750144 (+)
G57690 NA non-coding upstream 535800 41499964 ~ 41500218 (+)
G57599 NA non-coding upstream 1102808 40932967 ~ 40933210 (+)
G57843 NA non-coding downstream 43068 42085279 ~ 42088145 (+)
G57940 NA non-coding downstream 360024 42402235 ~ 42402452 (+)
G57945 NA non-coding downstream 373379 42415590 ~ 42418109 (+)
G57946 NA non-coding downstream 375930 42418141 ~ 42418505 (+)
G57947 NA non-coding downstream 376379 42418590 ~ 42420823 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 436894 41596229 ~ 41599124 (+)
G57604 NA other upstream 1041359 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 1930966 40086474 ~ 40105052 (+)
G57430 NA other upstream 2086818 39948006 ~ 39949200 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other upstream 2599001 39434900 ~ 39437017 (+)
AMCG00009647 NA other downstream 1394779 43436990 ~ 43444420 (+)
G58324 NA other downstream 1890741 43932952 ~ 43935762 (+)
G58522 NA other downstream 2344286 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 2519566 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 2542351 44584562 ~ 44603609 (+)

Expression


Co-expression Network