AMCG00009582


Basic Information

Item Value
gene id AMCG00009582
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42041199 ~ 42056128 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009582
ATGTCTAAAAGCAGTGAGACCATAGAGACAGCCGCTCTGGGCCGACCCTTCCAACTGGGCATGCTGTACGACTGCCGCAGGGACGCTCTTATCCCAGACCTACAGAAGAATGCAGCTGAACGCTCACAGTGCAAGACAGAGTTCAGTGTCTCTGCCTCGGACTCTATTGAGGACAAAGCTTCTGCTCTGAGGGTGAATGCTTCACTCAAGGCAAGTCTTCTTGGGGGGATGGTACAAGTTGAAGGAGCTGCCAAGTACTTCAATGACAGAATGAAATCCAACAGCCAGGCCAGGGTCACTCTACAGTACTACACCACTACTAAATATAAGCAGCTATCCATGGATCACTTGGccaaagaaaatataacacaCAAAAAGGTGTTTGAGGAAGACACGGCGACCCATGTGGTCACTGCCGTGCTGTACGGGGCGGAGGCTTACTTTGTGTTTGACAGAGAGGTGTCTGCAGACGagaacaaacaggaagtagaaGGAGAACTCAAACTCACAGTAGACCAGATGAAGACCATCACAATGGACACCCAAGGCtttgtgaaaatgaatgaaaacgaGACAACAGCTGTCAATAATTTCAACTGCACATTTTATGGGGATTTTCAGCTGAAGTCCAACCCCTGCACCTTCAACGATGCCATCCAAGTCTACAGCACCCTCCCACAACTCCTGGGGGTTAATGGAGAAAATGCCGTGCCTGTCAAGGTCTGGCTGTACCCACTCATCAAACTGGACTCCATGGCTGCTAAGATTGTCAGAGATATAAGTGATGAATCAGCTACACTATCACAGGAATTACTGGAGGATCTTCAAAGAATTGAAATGCAGTGCAATGACTTGACAAACCACACCGTAGCCAAAATGTTTCCTGAAGTGAACGAAAAGATAAACAAGCTGAGAAAAATGAACCAGCAATACAAGATATATTTAATGGCCAAACTTGCAAACTTGTTGCCTGCAATCCGTGGGGGTAAGCAACATGAATCAGCATTAAGAGAGGTGTTCAACCACAATGAAGAGTCTCCTTTTAACATTCAGAAACTCAACCTGTTCCTGAAAACcaaagagaaagagatgaaTGCAGTGAAAGGGATTCTCAACAAATTACAGAACGGTGGTCTACAAGTCCTGTCATTAGAAAGGGAGCTAGATAAAACGGTATATGATCCAGATGTTGAGAATGTGGTTTGCTTTACATTTACTTCACTACACCAGACTGAGCCATATCTGGCAGAGCTGTCTGATTACCTCAAAGCTCCAGAGAATCACAGAACTAACAGATTACAGCATGGTGATCAAATAGACTGCAAAGAATGGGTAAACAATCATTCCTTCCAAAAGATGAGAACATATCTTAGACTATTCCTCGAGCTAGTAGACCTCAACAAGGGAAACAAAGAAACTAAATTCTTTGTGACTTCTAAAAAAGATGAGCAGTGTCCAGCAGCCTCCATTCTCCTGTATGAGAGTGGGTCTTGTGCGGAAAGGGAGCTAGATAAAACGGTATATGATCCAGATGTTGAGAATGTGGTTTGCTTTACATTTACTTCACTACACCAGACAGAGCTGTCCGATTACCTCAAAGCTCCAGGGAATCACAGAACTAACAGATTACAGCATGGTGATCAAGTAGACTGCAAAGAATGGGTAAACAATCATTCCTTCCAAAAGATGAGAACATGTCTTAGACTATTCCTCGAGCTAGTAGACCTCAACAAGGGAAACAAAGAAACTAAATTCTTTGTGATCTCTAAACAAGATGAGCAGTGTCCAGCAGCCTGCATTCTCCTGTATGAGAGTGGTGATGGTGATGGGGATTATTTTGAGCCTCCAGCAAAGCCTGCCTCCCCTGCAGGTTGCTCAGTGACACATGACAGTGTCACAGTACCAATGGCTCCTCCATGCTCTGCCACAGTGCAGCGCAGACTGCAGTACAAAGCCAAGGGTCAAGATGAATGGACGTCTCACACTGTCATGGGCACTGAGGACACAGTCACTGTGTCAGGGCTGCAGCCAAACACTGAGTATGAGCTCAGGTTCACAGCACTGGGCAAGCTGGGCTACACCGTGAGCAGTGACATCTCCGGCATGAAGACTCTTCCAGCAAGTCCACCAGGAAAACCATCAGCTCTCCAGGTGACTCCATCTTCTATCACAGTAACCTGGGCAGGTCCTGCTTCTGTAGGAGAGGGGGCGACTGTACAGGGCTACAGGGTTGAATACATACAGGAAGAGCAACTGGATATTAAGGAAAAGTGTGTTCAGTGgctgaagaaaacaacaaagagaaacaattCAGTGATCTTGAaagaactgaataaaaaaacTTCCTACAGAATCAGAGTGTTCTGTGATTGTGGAGATCCTGGAGCCAGTGCAGCCAGTGATGAAGTGGTGATCACAACACCAGAAACGGGAGGTTGTGAGAGATTTCAACTTGACCCACAATACTATACTTTGTTACAAGAAGGGAAGCCCTCTATCtacaaacttaatttaaaagaagAGTCCAAAGATGAGAGAGGATATTGTCAGATTTATAGCTTTGGAGAAAAGGCAGTGCATCTTCAAAACAGAACAATCTTGGTCCTTGGAGCGACTGGTTCAGGGAAGACCACCCTAATCAATGGAATGATCAACCACATCCTGGGAGTGGAATGGGAGGATGAGTTCAGGTTTAAACTGATACATGAAGAGACCAACAAGTCCCAAGCTCAGAGTCAGACATCTGAGATCACAGCCTATCACATTTATCACCGTGAGGGATTCAAGATTCCTTACTCCCTCACCATCATAGACACTCCCGGGTTTGAAGACATGAAAGGTATCAAACAAGACAAACTCCTCACCAAGAAGATCAGGGAATTATTTTCTGACCCAAATGGCATTGTCAGTGTCGATGCAGTATGCTTTGTAGTCCAGTCTTTTTTAGTTCGCCTCACACCAACACAGAAATACATCTTTGATTCAATCCTCTCCATTTTTGGAAAAGACATTGCAGAGAACATACTGTTATTCCTTACCTTTTCTGATGGAAAGTTATGCCCTGTTTTAGATGCTGTAAAAGAAGCCAAATTGCCCTGTGCCAAAGCCAAGGACAACACACCTCTTCATTTCAAGTtcaataattatgttttgtatttaccGAACACATCTGATTGTGGGGGTGCAGGTGTGGAGGACTTTGAAAAATGGTTGTGGAAAATGGGGTCATATAGCACACACAAATTCCTTTTCAACTTAAACAAAATGGAGGCAAAACCAATACTGCTCATACAGAAGTTTTAG
>TU72308
CTTCACAAGACTTGCAATTGCTCCTGCTTAAAGTGTCATGATGTCTAAAAGCAGTGAGACCATAGAGACAGCCGCTCTGGGCCGACCCTTCCAACTGGGCATGCTGTACGACTGCCGCAGGGACGCTCTTATCCCAGGCATCACTTTGTGGGACTTAAAAGACCTACAGAAGAATGCAGCTGAACGCTCACAGTGCAAGACAGAGTTCAGTGTCTCTGCCTCGGACTCTATTGAGGACAAAGCTTCTGCTCTGAGGGTGAATGCTTCACTCAAGGTTGTCAGAAGTTGCTGGATATTGGTGGGAACTTGAACACACTGTCGTAGTCATCGAGACAGAGCATCCCAAACATGCTCAGTGTCTGGGGAGTATGCAGGCCATGGAAGAACTGGGACGTCGTGTACAGATCCTTGCAACATGGGGCCGTGCATTATCATGGTAATtcgtggacattcctgcagtcagcagccaatcacacgctccctcaaaactcgagacatctgtggcattgcgttgtcaaaactgcacattttagagtggccttttattgtccccagcacaaggtgcacctgtgtaataaTCATGcggtttaatcagcttcttgatgtGCCACACCTGTCAGATGAATTATCtgggcaaaggagaaatgctcactaacagggatgtcaacacatttgtgcacaaaattatTGAGAAATAAACTTTGTGTGCTTATAGACAATTTCTAGGGTgttttatttcagctcatgaaacatttatatttttgttcaatgTATATGGTACTCCCTTACCATCTCTTACCTAAAATGATGCTAAATTCTCAAAGTGTTGTCTGTCTTTTCCTCTTCAAAACATATACTGCATGCCTTAGATGCCAGAGAGATTTGTTCTCCATAATCTCAGGCAGGTTTTCCAGCTCTGTAGACATTTCAGTTTGTCATTCCTTTCAACTTGATTAAGATCAACCTAAAATCGTGTGCAAAAGTGTAATTACTGAATGTGAGATATGCTTACATAAGAAACCACCAACCTTTtgtataacaatttaaattacacatttcagtaGAAATAAAACTTCCTTTTGTCCCGAGACCACATTCTTGCATCTTGTATTCATAACCTCGAGTACTCATCAAATGCAGCTCATGACAAACTGTACAGTTTATTTGTGATAAAAATCTAAGTAGAGGAGTCAAACAATTTACAACAATTTCAAGGCAAGAGAAATGACTGCCAAGTGTGAAATACATAAGCAAATGGAAGACATTTCCTTTTGGagtgagaaatacattttctccctTAAGGTACAACTGTGCCATAACCCTAATCTGCAAAGGATTCTAAAACCAAATATTGATGTACAGGACATctagatagagacagagagagactgcagTGCAGGAAAATAGTTGTGTGGTTAAAAACAGTACTGATCTCATAAAGAACATCTGAATAATACTGAGAGCTGATGCATGAAGAACATATCCCAGTGAAGTTTCCACCATCTCAGTATAACCCATTGGCTGTCAACGATCAGTCCGAGTGCAGCAGACTCCTCCTCCCAGGCAAGGGCTtctccaaatgtattctgtcCACCGCATAGTTTTACTGCCGATACACAGCCAAAAACTCTCTGTACTTTCTCTTCAGCTCTGCCACTTTTGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009582 True 3303 mRNA 0.44 3 42043496 42055041
TU72308 False 1665 lncRNA 0.42 4 42041199 42056128

Neighbor

gene id symbol gene type direction distance location
AMCG00009576 NA coding downstream 145956 41883426 ~ 41895243 (-)
AMCG00009574 NA coding downstream 166609 41867541 ~ 41874590 (-)
AMCG00009573 NA coding downstream 177870 41850138 ~ 41863329 (-)
AMCG00009570 NA coding downstream 191562 41845020 ~ 41849637 (-)
AMCG00009572 NA coding downstream 252200 41787613 ~ 41788999 (-)
AMCG00009583 NA coding upstream 17782 42073910 ~ 42082769 (-)
AMCG00009585 NA coding upstream 29153 42085281 ~ 42102235 (-)
AMCG00009584 NA coding upstream 87464 42143592 ~ 42162603 (-)
AMCG00009590 NA coding upstream 170767 42226895 ~ 42229779 (-)
AMCG00009589 NA coding upstream 187260 42243388 ~ 42254102 (-)
G57600 NA non-coding downstream 1107989 40932965 ~ 40933210 (-)
G57596 NA non-coding downstream 1264115 40721431 ~ 40777084 (-)
G57545 NA non-coding downstream 1697720 40339347 ~ 40343479 (-)
G57524 NA non-coding downstream 1881591 40159397 ~ 40159608 (-)
G57400 NA non-coding downstream 2166970 39873971 ~ 39874229 (-)
G57858 LOC103374679,LOC100699862,LOC108250355,LOC107390564,LOC106535138,LOC106904453 non-coding upstream 117130 42173258 ~ 42175707 (-)
G57873 NA non-coding upstream 149142 42205270 ~ 42205559 (-)
G57982 NA non-coding upstream 412057 42468185 ~ 42468759 (-)
G57988 NA non-coding upstream 421593 42477721 ~ 42478112 (-)
G57998 NA non-coding upstream 483311 42539439 ~ 42540113 (-)
AMCG00009571 LOC107087052,LOC105890629 other downstream 214265 41814559 ~ 41826934 (-)
AMCG00009521 gigyf2,LOC107728389 other downstream 1883728 40121463 ~ 40157471 (-)
AMCG00009472 NA other downstream 3203605 38827965 ~ 38837594 (-)
G57155 dner other downstream 3458379 38580285 ~ 38582820 (-)
AMCG00009437 NA other downstream 4132231 37889502 ~ 37908968 (-)
G58025 NA other upstream 592722 42648850 ~ 42673707 (-)
G58333 NA other upstream 1426293 43482421 ~ 43945297 (-)
AMCG00009672 NA other upstream 1933383 43989511 ~ 43995654 (-)
AMCG00009697 NA other upstream 2445659 44501787 ~ 44512249 (-)
G58584 NA other upstream 2485766 44541894 ~ 44542809 (-)

Expression


Co-expression Network