AMCG00009585


Basic Information

Item Value
gene id AMCG00009585
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42085281 ~ 42102235 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009585
AAAGAGTAGACATTTCAATTCTTCTTTCCATTCTCCTCCCAGGTCTGTGTGGCACCCTCCCCCAGCCCCCATGGCACTCACACttttgctgctgtgtgtgctcCTGCCATCGGCCACCCTGGCACTGCCCTTTGAGCAGAGGGGTTTCATGGACTTCAGCCTGGATGAACTGGGTGGGCTGGGAATGTTAAACGATGAGGAGGGATCTGCGGACGTCCCCCCGGAGCTGCCCATCTGCCCGTTCGGGTGCCAGTGTCACCTGCGAGTGGTCCAGTGCTCGGATCTTGGGCTCACAGCTGTGCCACCGAACATCCCAAGTGACACATTGCTCCTGGACCTGCAGAACAACAGGATCACCGAGCTCAAAGAGAATGACTTCAAAGGACTGCACAACCTCTACGCTCTGGTCCTGCTCAACAACAAGATCTCCAAGGTCCATTCCAAGGCCTTTGCCCCCCTCAAACGCCTCCAGAAGCTCTACTTCTCCAAGAACATGCTGACAGATTTCCCTACCGGTCTGCCGTCCACACTGGTGGAGCTGAGGATCCACGACAATCAGATCAAGAAGATCTCTGAGGGAACCTTCAGCGGCCTCAACATGAACTGCATTGGCCTGAAACTCAGCTACCTTCGCATCTCTGAGGCCAAGCTTACTGGAATCCCTAAAGACCTGCCTGATAACCTGCACGAACTCCACCTTGACCACAATCAGATTCAAGCCATCGAACTGGAGGATCTCAGCCGTTACAAACACCTCTACAGGCTGGGGCTCGGATACAATCACATCCGCATGATCGAGAACGGCAGCCTGGCCTATGTGCCCAACCTCAGGGAGCTTCACTTGGACAACAACCGGCTGTCCCGCGTCCCCACCGGCCTGCCCGAAATGAAGTACCTGCAGGTGGTCTACCTGCACTCCAATAACATCACCCAGGTCGGTACAAACGATTTCTGCCCCGTGGGCTTCGGGATGAAGCGGGCTTACTACAACGGCATCAGTCTCTTCAGCAACCCTGTCAACTACTGGGAGGTGCAGCCAGCCACATTCCGCTGCGTGAACGACCGACTGGCCATACAATTCGGCAACTACAAGAAGTAAAAGCGAGAAAGAGACAgataaagagggagagagagagaaagagagagagaaggagaaggaaacCGAGAGAAAGACACAGGATAACAAGAAGCCTATACCCCCGAAACGTGCCTTCAAAAACCCCAAATCCCCCCAAATAATCCTATTTTTGTTTAGTGGcctgaaaaaatatacattccaTCTAATAACTTGGCAAAGGTGTATTTGCCAGTTTGCTTtttgtaattatgattattattattacttctcaGCGAGGATTAGACATAGATTCTGGTAAAATTTGTTCTTTCAAGCAAAATTGGATGCGGTGACATTTGTtaaacgtttttgttttgttagtttgtattcatattgttatgttattgttattattattatattattattcttattatttttgaagttttttttattattattattggtgagCTGTGTGGTGgggaacaagaaaaaaaaatccattgcCGTAAAAGTagatttttgatttgtttggggttttaaaATCCtattgaaaatagaaaaacagatttattgaTTATTCTCTGCGTTTTGGCTTTGTGCAGATTTTGGCTGGGGTCGGGTCGGGAGGGGAGGTGGGCGGTGTATTGCTCTAAAATACGCATTAATATACGTCTATGCTTGTGTTGAACTCTGTCACCTGTATCACCTGCccctgtttaaatgtatatgtgaaaATCACTTCAACTGGGTATACGAAGAAAGATGCTCACTTATCCTATATCTACGGGCTGCCTATTTCTATTCGTCTGTTGCTTGTCAAATGCAGTATCGGCTAGAATAAATGCTTTTTACTTTCATTACACTGGGGTTATAACAAGAGACAAGACCTGCTTTGTAAATCTTGGGTGGCGGAAGAAAGCTAAGCTGATTATCCAGTTGCCTCCTATTGGTTCTGAACTCTAGTGATCTGATCCCATTTAAAATCACTTGTAGGTACAGGCACTAAGACTGAGTAATGGTGGACATCCATTGAGATCATTAAAGCTTTCCCACAACGGACGGAGCCTGTCTGCCTTTTGTGAAATGGCTTTGGTAGGTCTGTGGTTCGGGTTCAGAACTGACTGTTAGCATCACTCTTCACACCTGACTGTGTCCCTAGATTTCCTAGCGTGGAGACATGTTGGTTCTAGTGTTTATTTCTTCTCAGTCTATCTgcctttgcaaaacaaaacattttatttccttttaattgcttttttcattCTGAAGGGACACAACTATATAAGGGCACCAGAAGCAACTAACTActccaaaagaaaagaaaagactgtCCAAATGGTTTGCTCTCTATTGTAACATTATTGTGATGTTCTTAAAGTGGTCCAGACATACTGGTAACTTAGTGGACATGCTGACAGTGCCACTAAGAATATGCTGAAGGGGTAGTTCAAACAGCACAATCCCCTATTGTGGTGCACCCTTAACGTAGCTCCCTAACTATGGCCAAAGCTGTAGTATCAATGGAAGTTTCCCCACATAGAAGCCATCAAGCACTGAACAGACCATCTAATGGCATCAAAACACAGACCTTAACATCGAGAAGCCATCCAACTGGAGTTATCATGCAAACTGGATTGAAGGAGCTGTGATCAGCCAATGGCTAGGAAAGCAAACTctaaaatcaaaaccaaattaTTGATAGAGTTCATAACCAGGTTAGTGTTAATTTCACTTAGGGTTAATATGTTACtgcactctttttaaaaatagcattgcctgtttgtttttcttttatgtttaaGTGCTATTTCTATACATTCTATAAAAAAGGCTTTAATCTCCACCATTCATTGTGTAGCTCAATTACATACCGACTTTAATGTCTTAACAGTCACATGAGTTTAGAATCATGCTCTTGTCTTGGCCGATTGTTTCAATTTTATCACGTTGTCCTGGGGTGTAGAGGACAACTACAGTCTTTCAGAGCACAATTGCTTGGACAAATCAAAGTAGGGGCATAAACCAGCTTTAGCCATTTTGTGATGCCATTTTGGTATTTTCAATGGTGTGAAAGGGCTCTGTTTAGTTCATCTGTAGGTGTTGTACTGGAGGCACAAAAGGTGTCCCAAAACCCTTAAGAGCAGGTTTGTGCTTCGCTTTGGATACTCCACATGTTTTACCTACATGTAATGACCTTGTAAATGTCTGACAGAGGACCAATAAAAACAGGGAGCATCTTCTGGAGAAGGCCACATAGCTTGTCACGGGCACCTTTGCTGGATCCTCCCCCTGTGTAGcagctttttacatttttcatatcaaACACTGACCTACCGAGTGTGAGAAAGGAACCACATGTCTCAGGATATTAATGGTAAGGAAACAGAGCACTTATTCATACCAGTATTATTTAGTGTTCAGTACCCCTTCAAGATCTGGGCAAATGGTTAAACACTGGTTCATTGAAACAGATATTCAGGCCAACTATTTTACATCTGGAGGGGAAACTAGAAGGCACTGTAGCCACCAAAGTCCCAGAGTTGGATCATTAGAAGCAAACCACAAACCATTTCTCCCATGATCACCCTCTTTCAAGAACAGGGTTCTTGTGTCTCCGGCGACCTTGATGAGCTCACACGAGGCTCTGCTTGTCTTGGAAATTGcattaaaagtttaattaaattaatcctttACTGTGTATTCTTT

Function

GO: NA

KEGG:

id description
K08118 BGN; biglycan

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009585 True 3766 mRNA 0.44 7 42085281 42102235

Neighbor

gene id symbol gene type direction distance location
AMCG00009583 NA coding downstream 2512 42073910 ~ 42082769 (-)
AMCG00009576 NA coding downstream 190038 41883426 ~ 41895243 (-)
AMCG00009574 NA coding downstream 210691 41867541 ~ 41874590 (-)
AMCG00009573 NA coding downstream 221952 41850138 ~ 41863329 (-)
AMCG00009570 NA coding downstream 235644 41845020 ~ 41849637 (-)
AMCG00009584 NA coding upstream 41357 42143592 ~ 42162603 (-)
AMCG00009590 NA coding upstream 124660 42226895 ~ 42229779 (-)
AMCG00009589 NA coding upstream 141153 42243388 ~ 42254102 (-)
AMCG00009592 NA coding upstream 224634 42326869 ~ 42334548 (-)
AMCG00009599 NA coding upstream 322693 42424928 ~ 42429586 (-)
G57600 NA non-coding downstream 1152071 40932965 ~ 40933210 (-)
G57596 NA non-coding downstream 1308197 40721431 ~ 40777084 (-)
G57545 NA non-coding downstream 1741802 40339347 ~ 40343479 (-)
G57524 NA non-coding downstream 1925673 40159397 ~ 40159608 (-)
G57400 NA non-coding downstream 2211052 39873971 ~ 39874229 (-)
G57858 LOC103374679,LOC100699862,LOC108250355,LOC107390564,LOC106535138,LOC106904453 non-coding upstream 71023 42173258 ~ 42175707 (-)
G57873 NA non-coding upstream 103035 42205270 ~ 42205559 (-)
G57982 NA non-coding upstream 365950 42468185 ~ 42468759 (-)
G57988 NA non-coding upstream 375486 42477721 ~ 42478112 (-)
G57998 NA non-coding upstream 437204 42539439 ~ 42540113 (-)
AMCG00009582 NA other downstream 29153 42041199 ~ 42056128 (-)
AMCG00009571 LOC107087052,LOC105890629 other downstream 258347 41814559 ~ 41826934 (-)
AMCG00009521 gigyf2,LOC107728389 other downstream 1927810 40121463 ~ 40157471 (-)
AMCG00009472 NA other downstream 3247687 38827965 ~ 38837594 (-)
G57155 dner other downstream 3502461 38580285 ~ 38582820 (-)
G58025 NA other upstream 546615 42648850 ~ 42673707 (-)
G58333 NA other upstream 1380186 43482421 ~ 43945297 (-)
AMCG00009672 NA other upstream 1887276 43989511 ~ 43995654 (-)
AMCG00009697 NA other upstream 2399552 44501787 ~ 44512249 (-)
G58584 NA other upstream 2439659 44541894 ~ 44542809 (-)

Expression


Co-expression Network