AMCG00009588


Basic Information

Item Value
gene id AMCG00009588
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42193294 ~ 42211548 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009588
TACTTTCTTGTGGATTCCAGTATAGCGTATTCAGAAGGCCTTATTAAGACTCCTTCGATCACTCTGCTCTCCTCTTATCCTGCCTTCATACCTGGGGAGACAGCTTGTTTCAGCTGCTCTGTCCCCTCCAGCCTCTACACCAGCATTGAGTTTGAGCTGTACAGGAGCAATGCTGGAAACCCCATAGTGACCCAACGAGCTGGATCCCCAAACACCAGTGTGGAGCTGACTGTGTCTAATGTGGACCCATCACACCAGGGCAGCTACAGCTGTCTGTACAGAGTCCAGGGGAGGACACAGACCTTCAGCTCAAATCACAGCGACTCCATTTATATTGCAGTGGCAATCAGTCACTCTGCCACCTTCTCCTTCCCAGCTGCACAGCTGTCCCATGAAGGGAAATACAGCTGTCAGTACCAGGCAGGGCTTCAGGGGCGTCACTTTGCTTCTCCCCTCAGTGATCCAGCTGAAGTCAGTGTAACTGATCTCAGATTCAATGGGGGTGCCTATTGTGCTGGGAGAGTGGAGGTGTATCACAGAGGGGAATGGGGCACTGTCTGTGATGATGACTGGGGATTGCCTGATGCAGATGTGGTGTGCAGACAGCTGGGGTGTGGGGCTGCTGTGTCTGCCCCTGGGAGAGCTGTCTATGGGCAGGGCAGTGGACCCATCTTACTGGATGACGTGGGGTGCAATGGGGAAGAGACTGTGCTCTCTCAGTGTCCTACTAGGGACTGGAGGCGTCACAACTGCAACCATGGCGAGGATGCCTCTGTGATCTGCTTTGATTCTGGTAGGGGCTGGAGGAGTCATAACTGCACCCATGGGGAAGACGCCTCTGTGATCTGCTTCAATTCTGATCTCAGACTTGGAGGGGGCGGCTCCTGTGCTGGAAGAGTGGAGGTGTATCACAGAGGAGACTGGGGCACTGTCTGTGAGGATGGCTGGGGATTGCCTGATGCAGATGTGGTGTGCAGACAGCTGGGGTGTGGGGCTGCTGTGTCTGCCCCTCATGGAGCTGTCTATGGGCAGGGCAGTGGACCCATCTTACTTAATTACGTGAAGTGCACTGGGAAAGTGGCTGTACTCTCTCAGTGTCCTTCTAGGGGCTGGAGGCGTCACAACTGCACACATGAGAAGGATGCCTCTGTGATCTGCTTTGATTCTGGTAGGGGCTGGAGGAGTCACAACTGCACCCATGGGCAGGACACCTCTGTGATCTGCTTTGATTCTGGTAGGGGCTGGAGGATACACAACTGCAACCATGGCGAGGACGCCTCTGTGATCTGCTTCAATTCTGACCTGAGGCTTCAAGAGGGACACGTCTGCGCTGGGAGAGTGGAGGTGTACTACAGAAGAGACTGGGGCACTGTCTGTGAGGATGGCTGGGGATTGCCTGATGCAGATGTGGTGTGCAGACAGCTGGGGTGTGGGGCTGCTGTGTCTGCCCCTGGGGGAGCTGTCTATGGGCAGGGCAGTGGACCCATCTTACTGGATAATGTGGGGTGCAGTGGGGGAGAGACTGTGCTCTCTCAGTGTCCTTCTAGGGGCTGGAGAAGTCATAACTGCAGTGATGGTCAGGACGCCTCTGTGATCTGCCTCAGTTCTGTGGTTCTAGAGACTCCAAGGATCACCACCACTGCCCCCAATGGAGAGGTGTCCAGGGGGCAGAACTTACAAATCACCTGCTCCACACCATCACAATACCCCGGTGGCAGCTTTCACCTCCTCCTGTCGGGATCAAAGTTTCAGTCCAAACTGGCCATCAATCACGTTGCCATCTTCGACTTCAGTTATGTGGATTTTCATCACGGGGGATCTTACCGCTGTCAGTATCAAACTCAAAGTCCGTATCAGTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009588 True 1860 mRNA 0.55 11 42193294 42211548

Neighbor

gene id symbol gene type direction distance location
AMCG00009580 LOC103374679,LOC100699862,LOC108250355,LOC107390564,LOC104941073,LOC106535138,LOC103468062 coding upstream 17594 42170346 ~ 42175700 (+)
AMCG00009581 NA coding upstream 115003 42075478 ~ 42078291 (+)
AMCG00009578 NA coding upstream 151083 42036018 ~ 42042211 (+)
AMCG00009579 LOC107712727,LOC103384719 coding upstream 163330 41979537 ~ 42029964 (+)
AMCG00009577 NA coding upstream 232385 41951667 ~ 41960909 (+)
AMCG00009587 LOC107712663 coding downstream 2056 42213604 ~ 42224519 (+)
AMCG00009586 NA coding downstream 55274 42266822 ~ 42271197 (+)
AMCG00009593 NA coding downstream 64451 42275999 ~ 42280429 (+)
AMCG00009591 NA coding downstream 78606 42290154 ~ 42298090 (+)
AMCG00009594 NA coding downstream 173951 42385499 ~ 42399331 (+)
G57843 NA non-coding upstream 105149 42085279 ~ 42088145 (+)
G57792 NA non-coding upstream 353828 41839165 ~ 41839466 (+)
G57775 NA non-coding upstream 375499 41815921 ~ 41817795 (+)
G57770 NA non-coding upstream 443150 41749555 ~ 41750144 (+)
G57690 NA non-coding upstream 693076 41499964 ~ 41500218 (+)
G57940 NA non-coding downstream 190687 42402235 ~ 42402452 (+)
G57945 NA non-coding downstream 204042 42415590 ~ 42418109 (+)
G57946 NA non-coding downstream 206593 42418141 ~ 42418505 (+)
G57947 NA non-coding downstream 207042 42418590 ~ 42420823 (+)
G57948 NA non-coding downstream 216294 42427842 ~ 42428048 (+)
G57830 NA other upstream 115053 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 594170 41596229 ~ 41599124 (+)
G57604 NA other upstream 1198635 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 2088242 40086474 ~ 40105052 (+)
G57430 NA other upstream 2244094 39948006 ~ 39949200 (+)
AMCG00009647 NA other downstream 1225442 43436990 ~ 43444420 (+)
G58324 NA other downstream 1721404 43932952 ~ 43935762 (+)
G58522 NA other downstream 2174949 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 2350229 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 2373014 44584562 ~ 44603609 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location