AMCG00009589


Basic Information

Item Value
gene id AMCG00009589
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42243388 ~ 42254102 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009589
ATGCCAGCCGTGCCTGTTCTCTCCAAGAGCCCAGGAGAACACAAACCCAGTTCACATCTGCTTCTGTTGAGGAGCTTTCTGCTGTGGGATCTGCATCGGGAACTGACCCACAACATGATGTGCACACTGCTGCATGGAGGTGCCAGTGCACCAATAGAAGAGATGGAGAGTCCAGTTGAGTTGGTGGTCAACAATGAAGGGAAGTTATCCATCAAGCAGGAGGCTTTGAAGATCCTGTCTAGGATTGACAGAccagtggtggtggtggcggtgGCTGGGCCAGCCCGCTCTGGGAAATCCTACCTCATGAACCGCCTGGCTGGAAGGAAGAAAGGGTTTGAATTGGGTGCCACTGTTCAGTCTCTTACCAAGGGGATCTGGATGTGGTGTTTGAGACATCCCACCAAACCTAACAACACACTGGTCCTGTTGGACACAGAGGGCTTTGGAGATGCTGAGAAGGGAGATGAAGACAACGACCACTCCATCTTCACTCTGGCAATTCTTCTCAGCAGCATGTTTGTCTACAACAGCAAGGGGACCATTACCCAGCACTCACTACAAGATCTTCTGCGAGCCATTCGAAACTACTTCCCAACTCGCAATTGCTTTGGATTCGTTACTCCGACGGGAAGATCCAAGCTGAAGAAATTGCAGGAGCTAAACGACAGCGAGTTTGACCCTGAGTTTGTTGCGGAATTTGAAAAGTTCTCAAGTTACATCTACAGAATGGCTGAGACAAAGATAGTGGATGAGTCTTATAACGCCGTCCAGATCTTCCTGAGGCACTCCATGAAGGATGAACAGTACACCTACCTCTCCAAGCTCATGGTGGCCTTGGGAGACAAATATAAAGCCTTACATCATGCTGTTGAGAGTAAGTCAGAAGAGAGGTGCACCTCTGTCTTGGAGGAATTGCAGAGTGGCCTGAAAGAAAAGTTAGACTCTGCACACTACATCCGAGCAGGGGGATATGAAGAATTTACTGCTGACCTAGAAGATATTGTACGACAATACAACATACAGGTGGAGGGTGAAGTTCAGGCAAAAAAGGTTCTGGACAGATTTTTCTTTGACATGAAGGCTTATGCCaaggaaataaagaaagtgGACACCATTGTACAAGccaaagaaacagaaatgaGTGACTTCCTAAAGGGACAGCAAGAGGAAGCTAAAGAGAAAACGAGGAGACAAGAGGAAAAAGAGAAGGACGAGCAAATGAAGCGCTATGAAGAAACAATCAAACAGCTGAATGAGAAAATTGAAGAAATTAACCAGATGAAGTCCACCAAGGCTAGAGAAGTGCAGGAGAAGAAGACGAGTGAAATGGAAATTTACAAGAAAGAAGGAAGCAAAGAAGACAGCGAACGGAtgagacgagagagagagcattttgaagaaaaggaagagaaacGACGTAACTCGTGGTATGAGTCCTTCAAAGAGTTTGCAGTCTGGATTTATGATTGGttttttctgcattga

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009589 True 1488 mRNA 0.46 9 42243388 42254102

Neighbor

gene id symbol gene type direction distance location
AMCG00009590 NA coding downstream 13609 42226895 ~ 42229779 (-)
AMCG00009584 NA coding downstream 80785 42143592 ~ 42162603 (-)
AMCG00009585 NA coding downstream 141153 42085281 ~ 42102235 (-)
AMCG00009583 NA coding downstream 160619 42073910 ~ 42082769 (-)
AMCG00009576 NA coding downstream 348145 41883426 ~ 41895243 (-)
AMCG00009592 NA coding upstream 72767 42326869 ~ 42334548 (-)
AMCG00009599 NA coding upstream 170826 42424928 ~ 42429586 (-)
AMCG00009598 NA coding upstream 175501 42429603 ~ 42429987 (-)
AMCG00009597 NA coding upstream 181133 42435235 ~ 42444068 (-)
AMCG00009596 NA coding upstream 220784 42474886 ~ 42475964 (-)
G57873 NA non-coding downstream 37829 42205270 ~ 42205559 (-)
G57858 LOC103374679,LOC100699862,LOC108250355,LOC107390564,LOC106535138,LOC106904453 non-coding downstream 67681 42173258 ~ 42175707 (-)
G57600 NA non-coding downstream 1310178 40932965 ~ 40933210 (-)
G57596 NA non-coding downstream 1466304 40721431 ~ 40777084 (-)
G57545 NA non-coding downstream 1899909 40339347 ~ 40343479 (-)
G57982 NA non-coding upstream 214083 42468185 ~ 42468759 (-)
G57988 NA non-coding upstream 223619 42477721 ~ 42478112 (-)
G57998 NA non-coding upstream 285337 42539439 ~ 42540113 (-)
G58039 NA non-coding upstream 442795 42696897 ~ 42697133 (-)
G58149 NA non-coding upstream 752499 43006601 ~ 43010113 (-)
AMCG00009582 NA other downstream 187260 42041199 ~ 42056128 (-)
AMCG00009571 LOC107087052,LOC105890629 other downstream 416454 41814559 ~ 41826934 (-)
AMCG00009521 gigyf2,LOC107728389 other downstream 2085917 40121463 ~ 40157471 (-)
AMCG00009472 NA other downstream 3405794 38827965 ~ 38837594 (-)
G57155 dner other downstream 3660568 38580285 ~ 38582820 (-)
G58025 NA other upstream 394748 42648850 ~ 42673707 (-)
G58333 NA other upstream 1228319 43482421 ~ 43945297 (-)
AMCG00009672 NA other upstream 1735409 43989511 ~ 43995654 (-)
AMCG00009697 NA other upstream 2247685 44501787 ~ 44512249 (-)
G58584 NA other upstream 2287792 44541894 ~ 44542809 (-)

Expression


Co-expression Network