AMCG00009607 (imp4,LOC106580531)


Basic Information

Item Value
gene id AMCG00009607
gene name imp4,LOC106580531
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42642193 ~ 42649279 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009607
atgggTGCGCAGCTGAGACGCGAGGCCAGGCTGAGAAAGGAGTACCTGTACCGAAAGGCTCTGGAGGACAGGGTGCGGACCATTGAGGACAAGAAGCAGAAGCTGAAACATGCGCTGGATGAGAACCAGCTGATCCCCACGGAGGTGCGCAGGGATGCCGTGCAGCTGCAGAAGCTCCTCGAATATGATGACGAGGGAGCAGAAGGTGTCAGATCGCACATGGACGATGAGTACAAATGGGCCGGAGTGGAGGACCCCAAAATCATGGTCACAACGTCCCGTGACCCCAGCTCCCGCCTCAAGATGTTTGCAAAGGTGAGTTACGACACGCTGTCCACTGTGTCCCTGCAGGAGGTCAAGCTGCTCTTCCCCGGGGCCCAGCGCATGAACAGAGGGAACCACGAGGTGCCAGCGCTGGTGCAGGCCTGTCGGGCCAACGACGTCACCGACCTTGTCATCCTGCACGAGACCAGGGGCCAGCCGGacGGGCTGATCGTGTGCCACCTCCCCTTCGGCCCCACCGCCTACTTCACGCTGTACAACGTGGTGATGAGACACGACGTCCCCGACATCGGCACCATGTCCGAGGCCTTCCCCCACCTCATCTTCCACAACTTCAGCTCCCGCCTGGGGCAGAGGGTGTCCAGCATCCTCAAGTACCTGTTCCCGGTGCCCAAAGAGGACAGCAAGAGAGTGATCACCTTTGCCAACCAAGAGGACTACATCTCCTTCAGACATCACACGTACAAGAAGACCGACCACAGGAACGTCGAGCTGTCAGAAGTGGGGCCGAGGTTTGAGATGAAACTGTACATGATCAAGCTGGGCACCCTGGAGAACGAGGCCACGGCGGACGTGGAGTGGCGGCTGCACCCCTTCACCCACACGGCCAAGAAGAGGAAGTTCCTCAGTGTGGAGTAGAGCCAGCGCTCGCATCACTGCAGCTTCGGCTGGGCACCCGACCCGATCCGCTCACGAGCTGCAGGAGTTCAAGTTTCTGCCCGCTTGGCGTGGAAGCTGGAATATAGGCGAATCTCGGTGTTCTCCATCAAGCCTGTTATTTAATGATCAGCCTGTGCTGTTGTCTGGacttcattttccattttttttatcttgttaaAACCCTTACGTTCTGCCATGCAGgattatgaatattttttatgtcaaataaatgtcTAAATATCTTCATTTGTctaaaaagcttttttcccaATGTAGTGACTTATTGAAATTACCTGA

Function

symbol description
imp4 Predicted to enable snoRNA binding activity. Predicted to be involved in rRNA processing. Part of Mpp10 complex. Is expressed in several structures, including alar plate midbrain region; immature eye; midbrain; neural plate; and segmental plate. Orthologous to human IMP4 (IMP U3 small nucleolar ribonucleoprotein 4).

NR:

description
U3 small nucleolar ribonucleoprotein protein IMP4

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component

KEGG:

id description
K14561 IMP4; U3 small nucleolar ribonucleoprotein protein IMP4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009607 True 1239 mRNA 0.55 8 42642193 42649279

Neighbor

gene id symbol gene type direction distance location
AMCG00009611 NA coding upstream 8555 42633435 ~ 42633638 (+)
AMCG00009609 NA coding upstream 10079 42629421 ~ 42632114 (+)
AMCG00009610 NA coding upstream 13476 42608497 ~ 42628717 (+)
AMCG00009608 NA coding upstream 42459 42596093 ~ 42599734 (+)
AMCG00009605 LOC107602861 coding upstream 71254 42566620 ~ 42570939 (+)
AMCG00009614 araf,LOC106585138,LOC106580530 coding downstream 14115 42663394 ~ 42665431 (+)
AMCG00009613 NA coding downstream 25949 42675228 ~ 42688453 (+)
AMCG00009617 NA coding downstream 58478 42707757 ~ 42722609 (+)
AMCG00009618 ccd22,LOC106572219,LOC104944807 coding downstream 195857 42845136 ~ 42856980 (+)
AMCG00009620 NA coding downstream 213124 42862403 ~ 42862624 (+)
G58008 NA non-coding upstream 5740 42629539 ~ 42636453 (+)
G57987 NA non-coding upstream 164081 42477715 ~ 42478112 (+)
G57981 NA non-coding upstream 173591 42468308 ~ 42468602 (+)
G57964 NA non-coding upstream 207041 42432877 ~ 42435152 (+)
G57948 NA non-coding upstream 214145 42427842 ~ 42428048 (+)
G58123 NA non-coding downstream 288728 42938007 ~ 42938874 (+)
G58148 NA non-coding downstream 357322 43006601 ~ 43010050 (+)
G58178 NA non-coding downstream 563431 43212710 ~ 43213028 (+)
G58195 NA non-coding downstream 600124 43249403 ~ 43249641 (+)
G58215 NA non-coding downstream 660581 43309860 ~ 43311062 (+)
G57830 NA other upstream 563952 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 1043069 41596229 ~ 41599124 (+)
G57604 NA other upstream 1647534 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 2537141 40086474 ~ 40105052 (+)
G57430 NA other upstream 2692993 39948006 ~ 39949200 (+)
AMCG00009647 NA other downstream 787711 43436990 ~ 43444420 (+)
G58324 NA other downstream 1283673 43932952 ~ 43935762 (+)
G58522 NA other downstream 1737218 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 1912498 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 1935283 44584562 ~ 44603609 (+)

Expression


Co-expression Network